Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:02:05 (1060423): wrapper (7.7.26015): starting
20:02:05 (1060423): wrapper: running run_atlas (--nthreads 8)
[2025-07-19 20:02:05] Arguments: --nthreads 8
[2025-07-19 20:02:05] Threads: 8
[2025-07-19 20:02:05] Checking for CVMFS
[2025-07-19 20:02:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-19 20:02:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-19 20:02:05] Running cvmfs_config stat atlas.cern.ch
[2025-07-19 20:02:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-19 20:02:07] 2.12.6.0 2935877 2243 295436 148522 0 686 36929740 40960000 31504 16776704 0 18852397 99.716 16906276 2409 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-19 20:02:07] CVMFS is ok
[2025-07-19 20:02:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-19 20:02:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-19 20:02:07] Further information can be found at the LHC@home message board.
[2025-07-19 20:02:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-19 20:02:07] Checking for apptainer binary...
[2025-07-19 20:02:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-19 20:02:07] Running /usr/bin/apptainer --version
[2025-07-19 20:02:07] apptainer version 1.4.1-1.el9
[2025-07-19 20:02:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-19 20:02:07] c7-2-17.aglt2.org
[2025-07-19 20:02:07] apptainer works
[2025-07-19 20:02:08] Set ATHENA_PROC_NUMBER=8
[2025-07-19 20:02:08] Set ATHENA_CORE_NUMBER=8
[2025-07-19 20:02:08] Starting ATLAS job with PandaID=6739271791
[2025-07-19 20:02:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-20 01:00:54]  *** The last 200 lines of the pilot log: ***
[2025-07-20 01:00:54] 2025-07-20 05:00:18,398 | INFO     | monitor loop #1095: job 0:6739271791 is in state 'finished'
[2025-07-20 01:00:54] 2025-07-20 05:00:18,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-20 01:00:54] 2025-07-20 05:00:20,324 | INFO     | PID=1080806 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-20 01:00:54] 2025-07-20 05:00:20,324 | INFO     | .. there are 66 such processes running
[2025-07-20 01:00:54] 2025-07-20 05:00:20,646 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-20 01:00:54] 2025-07-20 05:00:20,661 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3224.147927083334
[2025-07-20 01:00:54] 2025-07-20 05:00:20,676 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6739271791/memory_monitor_summary.json (trf name=prmon)
[2025-07-20 01:00:54] 2025-07-20 05:00:20,677 | INFO     | extracted standard info from prmon json
[2025-07-20 01:00:54] 2025-07-20 05:00:20,677 | INFO     | extracted standard memory fields from prmon json
[2025-07-20 01:00:54] 2025-07-20 05:00:20,677 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-20 01:00:54] 2025-07-20 05:00:20,677 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-20 01:00:54] 2025-07-20 05:00:20,677 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-20 01:00:54] 2025-07-20 05:00:20,681 | INFO     | fitting pss+swap vs Time
[2025-07-20 01:00:54] 2025-07-20 05:00:20,681 | INFO     | sum of square deviations: 7563013122.913777
[2025-07-20 01:00:54] 2025-07-20 05:00:20,683 | INFO     | sum of deviations: 77518355648.58626
[2025-07-20 01:00:54] 2025-07-20 05:00:20,683 | INFO     | mean x: 1752978771.0172415
[2025-07-20 01:00:54] 2025-07-20 05:00:20,683 | INFO     | mean y: 2434875.6827586205
[2025-07-20 01:00:54] 2025-07-20 05:00:20,683 | INFO     | -- intersect: -17965011379.888863
[2025-07-20 01:00:54] 2025-07-20 05:00:20,683 | INFO     | intersect: -17965011379.888863
[2025-07-20 01:00:54] 2025-07-20 05:00:20,684 | INFO     | chi2: 3.5409430229783405
[2025-07-20 01:00:54] 2025-07-20 05:00:20,684 | INFO     | sum of square deviations: 7178543145.178967
[2025-07-20 01:00:54] 2025-07-20 05:00:20,685 | INFO     | sum of deviations: 94181780756.14745
[2025-07-20 01:00:54] 2025-07-20 05:00:20,686 | INFO     | mean x: 1752978618.5157895
[2025-07-20 01:00:54] 2025-07-20 05:00:20,686 | INFO     | mean y: 2441385.5228070174
[2025-07-20 01:00:54] 2025-07-20 05:00:20,686 | INFO     | -- intersect: -22996465855.168056
[2025-07-20 01:00:54] 2025-07-20 05:00:20,686 | INFO     | intersect: -22996465855.168056
[2025-07-20 01:00:54] 2025-07-20 05:00:20,686 | INFO     | chi2: 2.8574922547886525
[2025-07-20 01:00:54] 2025-07-20 05:00:20,686 | INFO     | current chi2=2.8574922547886525 (change=19.301377168583393 %)
[2025-07-20 01:00:54] 2025-07-20 05:00:20,686 | INFO     | right removable region: 284
[2025-07-20 01:00:54] 2025-07-20 05:00:20,687 | INFO     | sum of square deviations: 7178521795.101743
[2025-07-20 01:00:54] 2025-07-20 05:00:20,688 | INFO     | sum of deviations: 6677514227.649124
[2025-07-20 01:00:54] 2025-07-20 05:00:20,688 | INFO     | mean x: 1752978923.5228071
[2025-07-20 01:00:54] 2025-07-20 05:00:20,688 | INFO     | mean y: 2462857.4385964912
[2025-07-20 01:00:54] 2025-07-20 05:00:20,688 | INFO     | -- intersect: -1628171141.6919565
[2025-07-20 01:00:54] 2025-07-20 05:00:20,689 | INFO     | intersect: -1628171141.6919565
[2025-07-20 01:00:54] 2025-07-20 05:00:20,689 | INFO     | chi2: 0.8970135829956009
[2025-07-20 01:00:54] 2025-07-20 05:00:20,689 | INFO     | current chi2=0.8970135829956009 (change=74.66738162194123 %)
[2025-07-20 01:00:54] 2025-07-20 05:00:20,689 | INFO     | sum of square deviations: 6807304402.825005
[2025-07-20 01:00:54] 2025-07-20 05:00:20,691 | INFO     | sum of deviations: 1118459116.8499908
[2025-07-20 01:00:54] 2025-07-20 05:00:20,691 | INFO     | mean x: 1752979076.025
[2025-07-20 01:00:54] 2025-07-20 05:00:20,691 | INFO     | mean y: 2465151.307142857
[2025-07-20 01:00:54] 2025-07-20 05:00:20,691 | INFO     | -- intersect: -285554204.5503356
[2025-07-20 01:00:54] 2025-07-20 05:00:20,691 | INFO     | intersect: -285554204.5503356
[2025-07-20 01:00:54] 2025-07-20 05:00:20,692 | INFO     | chi2: 0.8591574679320003
[2025-07-20 01:00:54] 2025-07-20 05:00:20,692 | INFO     | current chi2=0.8591574679320003 (change=4.220238776895554 %)
[2025-07-20 01:00:54] 2025-07-20 05:00:20,692 | INFO     | left removable region: 20
[2025-07-20 01:00:54] 2025-07-20 05:00:20,692 | INFO     | sum of square deviations: 5705745048.541672
[2025-07-20 01:00:54] 2025-07-20 05:00:20,693 | INFO     | sum of deviations: 2398836480.666671
[2025-07-20 01:00:54] 2025-07-20 05:00:20,694 | INFO     | mean x: 1752979198.0416667
[2025-07-20 01:00:54] 2025-07-20 05:00:20,694 | INFO     | mean y: 2479427.303030303
[2025-07-20 01:00:54] 2025-07-20 05:00:20,694 | INFO     | -- intersect: -734516427.6356577
[2025-07-20 01:00:54] 2025-07-20 05:00:20,694 | INFO     | intersect: -734516427.6356577
[2025-07-20 01:00:54] 2025-07-20 05:00:20,694 | INFO     | chi2: 0.03673694195474535
[2025-07-20 01:00:54] 2025-07-20 05:00:20,694 | INFO     | -- intersect: -734516427.6356577
[2025-07-20 01:00:54] 2025-07-20 05:00:20,694 | INFO     | current memory leak: 0.42 B/s (using 264 data points, chi2=0.04)
[2025-07-20 01:00:54] 2025-07-20 05:00:20,695 | INFO     | could have reported an average CPU frequency of 3184 MHz (13 samples)
[2025-07-20 01:00:54] 2025-07-20 05:00:20,695 | INFO     | ..............................
[2025-07-20 01:00:54] 2025-07-20 05:00:20,695 | INFO     | . Timing measurements:
[2025-07-20 01:00:54] 2025-07-20 05:00:20,695 | INFO     | . get job = 0 s
[2025-07-20 01:00:54] 2025-07-20 05:00:20,695 | INFO     | . initial setup = 7 s
[2025-07-20 01:00:54] 2025-07-20 05:00:20,695 | INFO     | . payload setup = 58 s
[2025-07-20 01:00:54] 2025-07-20 05:00:20,695 | INFO     | . stage-in = 0 s
[2025-07-20 01:00:54] 2025-07-20 05:00:20,695 | INFO     | . payload execution = 17672 s
[2025-07-20 01:00:54] 2025-07-20 05:00:20,695 | INFO     | . stage-out = 2 s
[2025-07-20 01:00:54] 2025-07-20 05:00:20,695 | INFO     | . log creation = 0 s
[2025-07-20 01:00:54] 2025-07-20 05:00:20,695 | INFO     | ..............................
[2025-07-20 01:00:54] 2025-07-20 05:00:21,252 | INFO     | 
[2025-07-20 01:00:54] 2025-07-20 05:00:21,252 | INFO     | job summary report
[2025-07-20 01:00:54] 2025-07-20 05:00:21,252 | INFO     | --------------------------------------------------
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | PanDA job id: 6739271791
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | task id: 45668889
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | errors: (none)
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | pilot state: finished 
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | transexitcode: 0
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | exeerrorcode: 0
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | exeerrordiag: 
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | exitcode: 0
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | exitmsg: OK
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | cpuconsumptiontime: 45649 s
[2025-07-20 01:00:54] 2025-07-20 05:00:21,253 | INFO     | nevents: 400
[2025-07-20 01:00:54] 2025-07-20 05:00:21,254 | INFO     | neventsw: 0
[2025-07-20 01:00:54] 2025-07-20 05:00:21,254 | INFO     | pid: 1111861
[2025-07-20 01:00:54] 2025-07-20 05:00:21,254 | INFO     | pgrp: 1111861
[2025-07-20 01:00:54] 2025-07-20 05:00:21,254 | INFO     | corecount: 8
[2025-07-20 01:00:54] 2025-07-20 05:00:21,254 | INFO     | event service: False
[2025-07-20 01:00:54] 2025-07-20 05:00:21,254 | INFO     | sizes: {0: 2396598, 1: 2397283, 2: 2397482, 13: 2397482, 24: 2397538, 35: 2397984, 46: 2397984, 17734: 2430139, 17735: 2430138, 17739: 2439248, 17752: 2439414}
[2025-07-20 01:00:54] 2025-07-20 05:00:21,254 | INFO     | --------------------------------------------------
[2025-07-20 01:00:54] 2025-07-20 05:00:21,254 | INFO     | 
[2025-07-20 01:00:54] 2025-07-20 05:00:21,254 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-20 01:00:54] 2025-07-20 05:00:21,289 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,290 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,290 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,290 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,290 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,290 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,290 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,290 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,290 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,290 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | job 6739271791 has completed (purged errors)
[2025-07-20 01:00:54] 2025-07-20 05:00:21,291 | INFO     | overall cleanup function is called
[2025-07-20 01:00:54] 2025-07-20 05:00:22,299 | INFO     | --- collectZombieJob: --- 10, [1111861]
[2025-07-20 01:00:54] 2025-07-20 05:00:22,299 | INFO     | zombie collector waiting for pid 1111861
[2025-07-20 01:00:54] 2025-07-20 05:00:22,300 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-20 01:00:54] 2025-07-20 05:00:22,300 | INFO     | collected zombie processes
[2025-07-20 01:00:54] 2025-07-20 05:00:22,300 | INFO     | will attempt to kill all subprocesses of pid=1111861
[2025-07-20 01:00:54] 2025-07-20 05:00:22,888 | INFO     | process IDs to be killed: [1111861] (in reverse order)
[2025-07-20 01:00:54] 2025-07-20 05:00:23,138 | WARNING  | found no corresponding commands to process id(s)
[2025-07-20 01:00:54] 2025-07-20 05:00:23,138 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-20 01:00:54] 2025-07-20 05:00:23,164 | INFO     | did not find any defunct processes belonging to 1111861
[2025-07-20 01:00:54] 2025-07-20 05:00:23,192 | INFO     | did not find any defunct processes belonging to 1111861
[2025-07-20 01:00:54] 2025-07-20 05:00:23,192 | INFO     | ready for new job
[2025-07-20 01:00:54] 2025-07-20 05:00:23,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-20 01:00:54] 2025-07-20 05:00:23,194 | INFO     | ***************************************
[2025-07-20 01:00:54] 2025-07-20 05:00:23,194 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-20 01:00:54] 2025-07-20 05:00:23,194 | INFO     | ***************************************
[2025-07-20 01:00:54] 2025-07-20 05:00:23,194 | INFO     | 
[2025-07-20 01:00:54] 2025-07-20 05:00:23,200 | INFO     | architecture information:
[2025-07-20 01:00:54] 2025-07-20 05:00:23,200 | INFO     | executing command: cat /etc/os-release
[2025-07-20 01:00:54] 2025-07-20 05:00:23,219 | INFO     | cat /etc/os-release:
[2025-07-20 01:00:54] NAME="CentOS Linux"
[2025-07-20 01:00:54] VERSION="7 (Core)"
[2025-07-20 01:00:54] ID="centos"
[2025-07-20 01:00:54] ID_LIKE="rhel fedora"
[2025-07-20 01:00:54] VERSION_ID="7"
[2025-07-20 01:00:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-20 01:00:54] ANSI_COLOR="0;31"
[2025-07-20 01:00:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-20 01:00:54] HOME_URL="https://www.centos.org/"
[2025-07-20 01:00:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-20 01:00:54] 
[2025-07-20 01:00:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-20 01:00:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-20 01:00:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-20 01:00:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-20 01:00:54] 
[2025-07-20 01:00:54] 2025-07-20 05:00:23,219 | INFO     | ***************************************
[2025-07-20 01:00:54] 2025-07-20 05:00:23,722 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-20 01:00:54] 2025-07-20 05:00:23,768 | INFO     | sufficient remaining disk space (129624965120 B)
[2025-07-20 01:00:54] 2025-07-20 05:00:23,768 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-20 01:00:54] 2025-07-20 05:00:23,768 | INFO     | current server update state: UPDATING_FINAL
[2025-07-20 01:00:54] 2025-07-20 05:00:23,768 | INFO     | update_server=False
[2025-07-20 01:00:54] 2025-07-20 05:00:23,768 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-20 01:00:54] 2025-07-20 05:00:23,768 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-20 01:00:54] 2025-07-20 05:00:23,769 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-20 01:00:54] 2025-07-20 05:00:24,347 | INFO     | all data control threads have been joined
[2025-07-20 01:00:54] 2025-07-20 05:00:24,438 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-20 01:00:54] 2025-07-20 05:00:24,438 | INFO     | aborting loop
[2025-07-20 01:00:54] 2025-07-20 05:00:24,676 | INFO     | all job control threads have been joined
[2025-07-20 01:00:54] 2025-07-20 05:00:24,774 | INFO     | [job] retrieve thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:24,862 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:24,863 | INFO     | [job] validate thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:25,014 | INFO     | [payload] validate_pre thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:25,188 | INFO     | all payload control threads have been joined
[2025-07-20 01:00:54] 2025-07-20 05:00:25,353 | INFO     | [data] control thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:25,434 | INFO     | [payload] execute_payloads thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:25,444 | INFO     | [job] job monitor thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:25,553 | INFO     | [payload] validate_post thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:25,681 | INFO     | [job] control thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:25,775 | INFO     | [data] copytool_out thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:25,783 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-20 01:00:54] 2025-07-20 05:00:26,047 | INFO     | [payload] failed_post thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:26,092 | INFO     | [job] create_data_payload thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:26,194 | INFO     | [payload] control thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:26,242 | INFO     | [data] copytool_in thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:26,791 | INFO     | [job] queue monitor thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:27,779 | INFO     | [data] queue_monitor thread has finished
[2025-07-20 01:00:54] 2025-07-20 05:00:28,989 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140412209518400)>', '<ExcThread(monitor, started 140411708356352)>']
[2025-07-20 01:00:54] 2025-07-20 05:00:34,015 | INFO     | all workflow threads have been joined
[2025-07-20 01:00:54] 2025-07-20 05:00:34,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-20 01:00:54] 2025-07-20 05:00:34,016 | INFO     | traces error code: 0
[2025-07-20 01:00:54] 2025-07-20 05:00:34,016 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-20 01:00:54] 2025-07-20 05:00:53,198 | INFO     | PID=1080806 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-20 01:00:54] 2025-07-20 05:00:53,198 | INFO     | .. there are 66 such processes running
[2025-07-20 01:00:54] 2025-07-20 05:00:53,198 | INFO     | found 0 job(s) in 20 queues
[2025-07-20 01:00:54] 2025-07-20 05:00:53,198 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-20 01:00:54] 2025-07-20 05:00:53,198 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-20 01:00:54] 2025-07-20 05:00:53,198 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-20 01:00:54] 2025-07-20 05:00:53,198 | INFO     | [monitor] control thread has ended
[2025-07-20 01:00:54] 2025-07-20 05:00:53,335 [wrapper] ==== pilot stdout END ====
[2025-07-20 01:00:54] 2025-07-20 05:00:53,345 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-20 01:00:54] 2025-07-20 05:00:53,379 [wrapper] pilotpid: 1080806
[2025-07-20 01:00:54] 2025-07-20 05:00:53,423 [wrapper] Pilot exit status: 0
[2025-07-20 01:00:54] 2025-07-20 05:00:53,500 [wrapper] pandaids: 6739271791
[2025-07-20 01:00:54] 2025-07-20 05:00:53,871 [wrapper] cleanup supervisor_pilot   24385 1080809
[2025-07-20 01:00:54] 2025-07-20 05:00:53,881 [wrapper] Test setup, not cleaning
[2025-07-20 01:00:54] 2025-07-20 05:00:53,909 [wrapper] apfmon messages muted
[2025-07-20 01:00:54] 2025-07-20 05:00:53,931 [wrapper] ==== wrapper stdout END ====
[2025-07-20 01:00:54] 2025-07-20 05:00:53,937 [wrapper] ==== wrapper stderr END ====
[2025-07-20 01:00:54]  *** Error codes and diagnostics ***
[2025-07-20 01:00:54]     "exeErrorCode": 0,
[2025-07-20 01:00:54]     "exeErrorDiag": "",
[2025-07-20 01:00:54]     "pilotErrorCode": 0,
[2025-07-20 01:00:54]     "pilotErrorDiag": "",
[2025-07-20 01:00:54]  *** Listing of results directory ***
[2025-07-20 01:00:54] total 533904
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas    530466 Jul 19 19:57 pilot3.tar.gz
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas      5112 Jul 19 20:00 queuedata.json
[2025-07-20 01:00:54] -rwx------. 1 boincer umatlas     36292 Jul 19 20:00 runpilot2-wrapper.sh
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas       100 Jul 19 20:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-20 01:00:54] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 19 20:02 run_atlas
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas       105 Jul 19 20:02 job.xml
[2025-07-20 01:00:54] -rw-r--r--. 2 boincer umatlas 309549159 Jul 19 20:02 EVNT.45668886._000006.pool.root.1
[2025-07-20 01:00:54] -rw-r--r--. 2 boincer umatlas     15095 Jul 19 20:02 start_atlas.sh
[2025-07-20 01:00:54] drwxrwx--x. 2 boincer umatlas      4096 Jul 19 20:02 shared
[2025-07-20 01:00:54] -rw-r--r--. 2 boincer umatlas    542866 Jul 19 20:02 input.tar.gz
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas         0 Jul 19 20:02 boinc_lockfile
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas      2534 Jul 19 20:02 pandaJob.out
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas    978446 Jul 19 20:03 agis_schedconf.cvmfs.json
[2025-07-20 01:00:54] drwx------. 4 boincer umatlas      4096 Jul 19 20:03 pilot3
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas      6934 Jul 20 00:57 init_data.xml
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas 229526876 Jul 20 00:59 HITS.45668889._000150.pool.root.1
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas       531 Jul 20 00:59 boinc_task_state.xml
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas      1057 Jul 20 01:00 memory_monitor_summary.json
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas   1593055 Jul 20 01:00 agis_ddmendpoints.agis.ALL.json
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas    440594 Jul 20 01:00 log.45668889._000150.job.log.tgz.1
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas        95 Jul 20 01:00 pilot_heartbeat.json
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas      7783 Jul 20 01:00 heartbeat.json
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas      8192 Jul 20 01:00 boinc_mmap_file
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas        28 Jul 20 01:00 wrapper_checkpoint.txt
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas       823 Jul 20 01:00 pilotlog.txt
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas   1447426 Jul 20 01:00 log.45668889._000150.job.log.1
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas       357 Jul 20 01:00 output.list
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas       620 Jul 20 01:00 runtime_log
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas   1904640 Jul 20 01:00 result.tar.gz
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas      8656 Jul 20 01:00 runtime_log.err
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas       659 Jul 20 01:00 qhfKDmleWx7n9Rq4apOajLDm4fhM0noT9bVof3QYDmBcsKDmpgGx1n.diag
[2025-07-20 01:00:54] -rw-r--r--. 1 boincer umatlas     21347 Jul 20 01:00 stderr.txt
[2025-07-20 01:00:54] HITS file was successfully produced:
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas 229526876 Jul 20 00:59 shared/HITS.pool.root.1
[2025-07-20 01:00:54]  *** Contents of shared directory: ***
[2025-07-20 01:00:54] total 528856
[2025-07-20 01:00:54] -rw-r--r--. 2 boincer umatlas 309549159 Jul 19 20:02 ATLAS.root_0
[2025-07-20 01:00:54] -rw-r--r--. 2 boincer umatlas     15095 Jul 19 20:02 start_atlas.sh
[2025-07-20 01:00:54] -rw-r--r--. 2 boincer umatlas    542866 Jul 19 20:02 input.tar.gz
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas 229526876 Jul 20 00:59 HITS.pool.root.1
[2025-07-20 01:00:54] -rw-------. 1 boincer umatlas   1904640 Jul 20 01:00 result.tar.gz
01:00:55 (1060423): run_atlas exited; CPU time 46524.009868
01:00:55 (1060423): called boinc_finish(0)

</stderr_txt>
]]>

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