Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:54:30 (3302058): wrapper (7.7.26015): starting
17:54:30 (3302058): wrapper: running run_atlas (--nthreads 10)
[2025-07-19 17:54:30] Arguments: --nthreads 10
[2025-07-19 17:54:30] Threads: 10
[2025-07-19 17:54:30] Checking for CVMFS
[2025-07-19 17:54:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-19 17:54:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-19 17:54:30] Running cvmfs_config stat atlas.cern.ch
[2025-07-19 17:54:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-19 17:54:31] 2.12.6.0 4120630 7428 278752 148519 1 99 28895228 32935937 15475 16776704 0 29812181 99.486 44985863 29508 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-19 17:54:31] CVMFS is ok
[2025-07-19 17:54:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-19 17:54:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-19 17:54:31] Further information can be found at the LHC@home message board.
[2025-07-19 17:54:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-19 17:54:31] Checking for apptainer binary...
[2025-07-19 17:54:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-19 17:54:31] Running /usr/bin/apptainer --version
[2025-07-19 17:54:31] apptainer version 1.4.1-1.el9
[2025-07-19 17:54:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-19 17:54:32] c-5-4.aglt2.org
[2025-07-19 17:54:32] apptainer works
[2025-07-19 17:54:32] Set ATHENA_PROC_NUMBER=10
[2025-07-19 17:54:32] Set ATHENA_CORE_NUMBER=10
[2025-07-19 17:54:32] Starting ATLAS job with PandaID=6739113000
[2025-07-19 17:54:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:31:24 (115079): wrapper (7.7.26015): starting
23:31:24 (115079): wrapper: running run_atlas (--nthreads 10)
[2025-07-19 23:31:24] Arguments: --nthreads 10
[2025-07-19 23:31:24] Threads: 10
[2025-07-19 23:31:24] This job has been restarted, cleaning up previous attempt
[2025-07-19 23:31:24] Checking for CVMFS
[2025-07-19 23:31:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-19 23:31:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-19 23:31:25] Running cvmfs_config stat atlas.cern.ch
[2025-07-19 23:31:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-19 23:31:25] 2.12.6.0 4120630 7765 287824 148528 0 384 29668105 32935937 16702 16776704 0 31020285 99.502 45340665 29537 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-19 23:31:25] CVMFS is ok
[2025-07-19 23:31:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-19 23:31:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-19 23:31:25] Further information can be found at the LHC@home message board.
[2025-07-19 23:31:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-19 23:31:25] Checking for apptainer binary...
[2025-07-19 23:31:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-19 23:31:25] Running /usr/bin/apptainer --version
[2025-07-19 23:31:25] apptainer version 1.4.1-1.el9
[2025-07-19 23:31:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-19 23:31:26] c-5-4.aglt2.org
[2025-07-19 23:31:26] apptainer works
[2025-07-19 23:31:26] Set ATHENA_PROC_NUMBER=10
[2025-07-19 23:31:26] Set ATHENA_CORE_NUMBER=10
[2025-07-19 23:31:26] Starting ATLAS job with PandaID=6739113000
[2025-07-19 23:31:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-20 07:35:25]  *** The last 200 lines of the pilot log: ***
[2025-07-20 07:35:25] 2025-07-20 11:34:49,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-20 07:35:25] 2025-07-20 11:34:51,886 | INFO     | monitor loop #1525: job 0:6739113000 is in state 'finished'
[2025-07-20 07:35:25] 2025-07-20 11:34:51,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-20 07:35:25] 2025-07-20 11:34:53,300 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-20 07:35:25] 2025-07-20 11:34:53,307 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2679.97405
[2025-07-20 07:35:25] 2025-07-20 11:34:53,315 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6739113000/memory_monitor_summary.json (trf name=prmon)
[2025-07-20 07:35:25] 2025-07-20 11:34:53,316 | INFO     | extracted standard info from prmon json
[2025-07-20 07:35:25] 2025-07-20 11:34:53,317 | INFO     | extracted standard memory fields from prmon json
[2025-07-20 07:35:25] 2025-07-20 11:34:53,317 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-20 07:35:25] 2025-07-20 11:34:53,317 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-20 07:35:25] 2025-07-20 11:34:53,317 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-20 07:35:25] 2025-07-20 11:34:53,327 | INFO     | fitting pss+swap vs Time
[2025-07-20 07:35:25] 2025-07-20 11:34:53,328 | INFO     | sum of square deviations: 32812307504.562405
[2025-07-20 07:35:25] 2025-07-20 11:34:53,334 | INFO     | sum of deviations: -100574240378.13538
[2025-07-20 07:35:25] 2025-07-20 11:34:53,334 | INFO     | mean x: 1752996847.7505286
[2025-07-20 07:35:25] 2025-07-20 11:34:53,334 | INFO     | mean y: 2256656.5412262157
[2025-07-20 07:35:25] 2025-07-20 11:34:53,334 | INFO     | -- intersect: 5375433362.362987
[2025-07-20 07:35:25] 2025-07-20 11:34:53,334 | INFO     | intersect: 5375433362.362987
[2025-07-20 07:35:25] 2025-07-20 11:34:53,335 | INFO     | chi2: 2.892136457100807
[2025-07-20 07:35:25] 2025-07-20 11:34:53,336 | INFO     | sum of square deviations: 31782759261.715828
[2025-07-20 07:35:25] 2025-07-20 11:34:53,342 | INFO     | sum of deviations: -77988763609.33336
[2025-07-20 07:35:25] 2025-07-20 11:34:53,342 | INFO     | mean x: 1752996695.258547
[2025-07-20 07:35:25] 2025-07-20 11:34:53,342 | INFO     | mean y: 2259985.3333333335
[2025-07-20 07:35:25] 2025-07-20 11:34:53,343 | INFO     | -- intersect: 4303775903.088825
[2025-07-20 07:35:25] 2025-07-20 11:34:53,343 | INFO     | intersect: 4303775903.088825
[2025-07-20 07:35:25] 2025-07-20 11:34:53,343 | INFO     | chi2: 2.744321837076894
[2025-07-20 07:35:25] 2025-07-20 11:34:53,344 | INFO     | current chi2=2.744321837076894 (change=5.1109144473801305 %)
[2025-07-20 07:35:25] 2025-07-20 11:34:53,344 | INFO     | right removable region: 467
[2025-07-20 07:35:25] 2025-07-20 11:34:53,345 | INFO     | sum of square deviations: 31782542711.715824
[2025-07-20 07:35:25] 2025-07-20 11:34:53,350 | INFO     | sum of deviations: -182793576337.4466
[2025-07-20 07:35:25] 2025-07-20 11:34:53,351 | INFO     | mean x: 1752997000.258547
[2025-07-20 07:35:25] 2025-07-20 11:34:53,351 | INFO     | mean y: 2268795.549145299
[2025-07-20 07:35:25] 2025-07-20 11:34:53,351 | INFO     | -- intersect: 10084425968.831408
[2025-07-20 07:35:25] 2025-07-20 11:34:53,351 | INFO     | intersect: 10084425968.831408
[2025-07-20 07:35:25] 2025-07-20 11:34:53,352 | INFO     | chi2: 1.1208607019747874
[2025-07-20 07:35:25] 2025-07-20 11:34:53,352 | INFO     | current chi2=1.1208607019747874 (change=61.24454296674566 %)
[2025-07-20 07:35:25] 2025-07-20 11:34:53,353 | INFO     | sum of square deviations: 30774659470.90707
[2025-07-20 07:35:25] 2025-07-20 11:34:53,358 | INFO     | sum of deviations: -176524622819.24612
[2025-07-20 07:35:25] 2025-07-20 11:34:53,358 | INFO     | mean x: 1752997152.7580993
[2025-07-20 07:35:25] 2025-07-20 11:34:53,358 | INFO     | mean y: 2267835.2656587474
[2025-07-20 07:35:25] 2025-07-20 11:34:53,358 | INFO     | -- intersect: 10057526496.579939
[2025-07-20 07:35:25] 2025-07-20 11:34:53,358 | INFO     | intersect: 10057526496.579939
[2025-07-20 07:35:25] 2025-07-20 11:34:53,359 | INFO     | chi2: 1.0757754298293853
[2025-07-20 07:35:25] 2025-07-20 11:34:53,359 | INFO     | current chi2=1.0757754298293853 (change=4.022379593286534 %)
[2025-07-20 07:35:25] 2025-07-20 11:34:53,359 | INFO     | left removable region: 20
[2025-07-20 07:35:25] 2025-07-20 11:34:53,360 | INFO     | sum of square deviations: 27693209079.387154
[2025-07-20 07:35:25] 2025-07-20 11:34:53,365 | INFO     | sum of deviations: -110518464791.15883
[2025-07-20 07:35:25] 2025-07-20 11:34:53,365 | INFO     | mean x: 1752997274.7606263
[2025-07-20 07:35:25] 2025-07-20 11:34:53,365 | INFO     | mean y: 2264226.138702461
[2025-07-20 07:35:25] 2025-07-20 11:34:53,366 | INFO     | -- intersect: 6998151450.123691
[2025-07-20 07:35:25] 2025-07-20 11:34:53,366 | INFO     | intersect: 6998151450.123691
[2025-07-20 07:35:25] 2025-07-20 11:34:53,366 | INFO     | chi2: 0.8124996882477301
[2025-07-20 07:35:25] 2025-07-20 11:34:53,367 | INFO     | -- intersect: 6998151450.123691
[2025-07-20 07:35:25] 2025-07-20 11:34:53,367 | INFO     | current memory leak: -3.99 B/s (using 447 data points, chi2=0.81)
[2025-07-20 07:35:25] 2025-07-20 11:34:53,368 | INFO     | could have reported an average CPU frequency of 2605 MHz (19 samples)
[2025-07-20 07:35:25] 2025-07-20 11:34:53,368 | INFO     | ..............................
[2025-07-20 07:35:25] 2025-07-20 11:34:53,368 | INFO     | . Timing measurements:
[2025-07-20 07:35:25] 2025-07-20 11:34:53,368 | INFO     | . get job = 0 s
[2025-07-20 07:35:25] 2025-07-20 11:34:53,368 | INFO     | . initial setup = 5 s
[2025-07-20 07:35:25] 2025-07-20 11:34:53,368 | INFO     | . payload setup = 32 s
[2025-07-20 07:35:25] 2025-07-20 11:34:53,368 | INFO     | . stage-in = 0 s
[2025-07-20 07:35:25] 2025-07-20 11:34:53,368 | INFO     | . payload execution = 28856 s
[2025-07-20 07:35:25] 2025-07-20 11:34:53,369 | INFO     | . stage-out = 2 s
[2025-07-20 07:35:25] 2025-07-20 11:34:53,369 | INFO     | . log creation = 0 s
[2025-07-20 07:35:25] 2025-07-20 11:34:53,369 | INFO     | ..............................
[2025-07-20 07:35:25] 2025-07-20 11:34:53,479 | INFO     | 
[2025-07-20 07:35:25] 2025-07-20 11:34:53,479 | INFO     | job summary report
[2025-07-20 07:35:25] 2025-07-20 11:34:53,479 | INFO     | --------------------------------------------------
[2025-07-20 07:35:25] 2025-07-20 11:34:53,480 | INFO     | PanDA job id: 6739113000
[2025-07-20 07:35:25] 2025-07-20 11:34:53,480 | INFO     | task id: 45668889
[2025-07-20 07:35:25] 2025-07-20 11:34:53,480 | INFO     | errors: (none)
[2025-07-20 07:35:25] 2025-07-20 11:34:53,480 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-20 07:35:25] 2025-07-20 11:34:53,480 | INFO     | pilot state: finished 
[2025-07-20 07:35:25] 2025-07-20 11:34:53,480 | INFO     | transexitcode: 0
[2025-07-20 07:35:25] 2025-07-20 11:34:53,480 | INFO     | exeerrorcode: 0
[2025-07-20 07:35:25] 2025-07-20 11:34:53,480 | INFO     | exeerrordiag: 
[2025-07-20 07:35:25] 2025-07-20 11:34:53,481 | INFO     | exitcode: 0
[2025-07-20 07:35:25] 2025-07-20 11:34:53,481 | INFO     | exitmsg: OK
[2025-07-20 07:35:25] 2025-07-20 11:34:53,481 | INFO     | cpuconsumptiontime: 70107 s
[2025-07-20 07:35:25] 2025-07-20 11:34:53,481 | INFO     | nevents: 400
[2025-07-20 07:35:25] 2025-07-20 11:34:53,481 | INFO     | neventsw: 0
[2025-07-20 07:35:25] 2025-07-20 11:34:53,481 | INFO     | pid: 136016
[2025-07-20 07:35:25] 2025-07-20 11:34:53,481 | INFO     | pgrp: 136016
[2025-07-20 07:35:25] 2025-07-20 11:34:53,482 | INFO     | corecount: 10
[2025-07-20 07:35:25] 2025-07-20 11:34:53,482 | INFO     | event service: False
[2025-07-20 07:35:25] 2025-07-20 11:34:53,482 | INFO     | sizes: {0: 2396594, 1: 2397450, 12: 2397450, 23: 2397478, 28: 2397768, 34: 2397796, 28892: 2434903, 28895: 2443901, 28896: 2443957, 28900: 2444151}
[2025-07-20 07:35:25] 2025-07-20 11:34:53,482 | INFO     | --------------------------------------------------
[2025-07-20 07:35:25] 2025-07-20 11:34:53,482 | INFO     | 
[2025-07-20 07:35:25] 2025-07-20 11:34:53,482 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-20 07:35:25] 2025-07-20 11:34:53,503 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,504 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,504 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,504 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,504 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,504 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,505 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,505 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,505 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,505 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,505 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,505 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,505 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,505 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,505 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,506 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,506 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,506 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-20 07:35:25] 2025-07-20 11:34:53,506 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,506 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-20 07:35:25] 2025-07-20 11:34:53,506 | INFO     | job 6739113000 has completed (purged errors)
[2025-07-20 07:35:25] 2025-07-20 11:34:53,507 | INFO     | overall cleanup function is called
[2025-07-20 07:35:25] 2025-07-20 11:34:54,515 | INFO     | --- collectZombieJob: --- 10, [136016]
[2025-07-20 07:35:25] 2025-07-20 11:34:54,515 | INFO     | zombie collector waiting for pid 136016
[2025-07-20 07:35:25] 2025-07-20 11:34:54,515 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-20 07:35:25] 2025-07-20 11:34:54,515 | INFO     | collected zombie processes
[2025-07-20 07:35:25] 2025-07-20 11:34:54,515 | INFO     | will attempt to kill all subprocesses of pid=136016
[2025-07-20 07:35:25] 2025-07-20 11:34:54,886 | INFO     | process IDs to be killed: [136016] (in reverse order)
[2025-07-20 07:35:25] 2025-07-20 11:34:54,995 | WARNING  | found no corresponding commands to process id(s)
[2025-07-20 07:35:25] 2025-07-20 11:34:54,996 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-20 07:35:25] 2025-07-20 11:34:55,014 | INFO     | did not find any defunct processes belonging to 136016
[2025-07-20 07:35:25] 2025-07-20 11:34:55,032 | INFO     | did not find any defunct processes belonging to 136016
[2025-07-20 07:35:25] 2025-07-20 11:34:55,032 | INFO     | ready for new job
[2025-07-20 07:35:25] 2025-07-20 11:34:55,032 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-20 07:35:25] 2025-07-20 11:34:55,035 | INFO     | ***************************************
[2025-07-20 07:35:25] 2025-07-20 11:34:55,035 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-20 07:35:25] 2025-07-20 11:34:55,035 | INFO     | ***************************************
[2025-07-20 07:35:25] 2025-07-20 11:34:55,035 | INFO     | 
[2025-07-20 07:35:25] 2025-07-20 11:34:55,050 | INFO     | architecture information:
[2025-07-20 07:35:25] 2025-07-20 11:34:55,050 | INFO     | executing command: cat /etc/os-release
[2025-07-20 07:35:25] 2025-07-20 11:34:55,066 | INFO     | cat /etc/os-release:
[2025-07-20 07:35:25] NAME="CentOS Linux"
[2025-07-20 07:35:25] VERSION="7 (Core)"
[2025-07-20 07:35:25] ID="centos"
[2025-07-20 07:35:25] ID_LIKE="rhel fedora"
[2025-07-20 07:35:25] VERSION_ID="7"
[2025-07-20 07:35:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-20 07:35:25] ANSI_COLOR="0;31"
[2025-07-20 07:35:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-20 07:35:25] HOME_URL="https://www.centos.org/"
[2025-07-20 07:35:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-20 07:35:25] 
[2025-07-20 07:35:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-20 07:35:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-20 07:35:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-20 07:35:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-20 07:35:25] 
[2025-07-20 07:35:25] 2025-07-20 11:34:55,067 | INFO     | ***************************************
[2025-07-20 07:35:25] 2025-07-20 11:34:55,570 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-20 07:35:25] 2025-07-20 11:34:55,588 | INFO     | sufficient remaining disk space (76367790080 B)
[2025-07-20 07:35:25] 2025-07-20 11:34:55,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-20 07:35:25] 2025-07-20 11:34:55,589 | INFO     | current server update state: UPDATING_FINAL
[2025-07-20 07:35:25] 2025-07-20 11:34:55,589 | INFO     | update_server=False
[2025-07-20 07:35:25] 2025-07-20 11:34:55,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-20 07:35:25] 2025-07-20 11:34:55,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-20 07:35:25] 2025-07-20 11:34:55,590 | INFO     | aborting loop
[2025-07-20 07:35:25] 2025-07-20 11:34:55,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-20 07:35:25] 2025-07-20 11:34:55,600 | INFO     | all data control threads have been joined
[2025-07-20 07:35:25] 2025-07-20 11:34:55,600 | INFO     | all job control threads have been joined
[2025-07-20 07:35:25] 2025-07-20 11:34:55,901 | INFO     | all payload control threads have been joined
[2025-07-20 07:35:25] 2025-07-20 11:34:56,093 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-20 07:35:25] 2025-07-20 11:34:56,597 | INFO     | [job] job monitor thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:56,601 | INFO     | [job] retrieve thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:56,606 | INFO     | [job] control thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:56,610 | INFO     | [data] control thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:56,794 | INFO     | [payload] execute_payloads thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:56,905 | INFO     | [payload] control thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:57,029 | INFO     | [payload] validate_pre thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:57,493 | INFO     | [job] create_data_payload thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:57,615 | INFO     | [payload] validate_post thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:57,843 | INFO     | [payload] failed_post thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:58,014 | INFO     | [job] validate thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:58,016 | INFO     | [data] copytool_in thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:58,098 | INFO     | [data] copytool_out thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:58,488 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-20 07:35:25] 2025-07-20 11:34:59,494 | INFO     | [job] queue monitor thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:34:59,597 | INFO     | [data] queue_monitor thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:35:06,205 | INFO     | job.realtimelogging is not enabled
[2025-07-20 07:35:25] 2025-07-20 11:35:07,210 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-20 07:35:25] 2025-07-20 11:35:08,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140016484857664)>', '<ExcThread(monitor, started 140016000956160)>']
[2025-07-20 07:35:25] 2025-07-20 11:35:13,301 | INFO     | all workflow threads have been joined
[2025-07-20 07:35:25] 2025-07-20 11:35:13,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-20 07:35:25] 2025-07-20 11:35:13,302 | INFO     | traces error code: 0
[2025-07-20 07:35:25] 2025-07-20 11:35:13,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-20 07:35:25] 2025-07-20 11:35:25,327 | INFO     | PID=121290 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-20 07:35:25] 2025-07-20 11:35:25,328 | INFO     | .. there are 27 such processes running
[2025-07-20 07:35:25] 2025-07-20 11:35:25,328 | INFO     | found 0 job(s) in 20 queues
[2025-07-20 07:35:25] 2025-07-20 11:35:25,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-20 07:35:25] 2025-07-20 11:35:25,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-20 07:35:25] 2025-07-20 11:35:25,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-20 07:35:25] 2025-07-20 11:35:25,328 | INFO     | [monitor] control thread has ended
[2025-07-20 07:35:25] 2025-07-20 11:35:25,520 [wrapper] ==== pilot stdout END ====
[2025-07-20 07:35:25] 2025-07-20 11:35:25,523 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-20 07:35:25] 2025-07-20 11:35:25,526 [wrapper] pilotpid: 121290
[2025-07-20 07:35:25] 2025-07-20 11:35:25,530 [wrapper] Pilot exit status: 0
[2025-07-20 07:35:25] 2025-07-20 11:35:25,542 [wrapper] pandaids: 6739113000 6739113000
[2025-07-20 07:35:25] 2025-07-20 11:35:25,615 [wrapper] cleanup supervisor_pilot 1357572 121291
[2025-07-20 07:35:25] 2025-07-20 11:35:25,618 [wrapper] Test setup, not cleaning
[2025-07-20 07:35:25] 2025-07-20 11:35:25,621 [wrapper] apfmon messages muted
[2025-07-20 07:35:25] 2025-07-20 11:35:25,624 [wrapper] ==== wrapper stdout END ====
[2025-07-20 07:35:25] 2025-07-20 11:35:25,626 [wrapper] ==== wrapper stderr END ====
[2025-07-20 07:35:25]  *** Error codes and diagnostics ***
[2025-07-20 07:35:25]     "exeErrorCode": 0,
[2025-07-20 07:35:25]     "exeErrorDiag": "",
[2025-07-20 07:35:25]     "pilotErrorCode": 0,
[2025-07-20 07:35:25]     "pilotErrorDiag": "",
[2025-07-20 07:35:25]  *** Listing of results directory ***
[2025-07-20 07:35:25] total 830976
[2025-07-20 07:35:25] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-20 07:35:25] -rwx------. 1 boincer umatlas     36292 Jul 19 17:50 runpilot2-wrapper.sh
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas      5112 Jul 19 17:50 queuedata.json
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas    530466 Jul 19 17:50 pilot3.tar.gz
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas       100 Jul 19 17:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-20 07:35:25] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 19 17:54 run_atlas
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas       105 Jul 19 17:54 job.xml
[2025-07-20 07:35:25] -rw-r--r--. 3 boincer umatlas 307713275 Jul 19 17:54 EVNT.45668886._000003.pool.root.1
[2025-07-20 07:35:25] -rw-r--r--. 3 boincer umatlas 307713275 Jul 19 17:54 ATLAS.root_0
[2025-07-20 07:35:25] -rw-r--r--. 2 boincer umatlas     15095 Jul 19 17:54 start_atlas.sh
[2025-07-20 07:35:25] drwxrwx--x. 2 boincer umatlas      4096 Jul 19 17:54 shared
[2025-07-20 07:35:25] -rw-r--r--. 2 boincer umatlas    542865 Jul 19 17:54 input.tar.gz
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas         0 Jul 19 17:54 boinc_lockfile
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas      2532 Jul 19 23:31 pandaJob.out
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas    978438 Jul 19 23:32 agis_schedconf.cvmfs.json
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas      6657 Jul 20 07:30 init_data.xml
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas 226337261 Jul 20 07:34 HITS.45668889._000058.pool.root.1
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas       533 Jul 20 07:34 boinc_task_state.xml
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas        96 Jul 20 07:34 pilot_heartbeat.json
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas      1040 Jul 20 07:34 memory_monitor_summary.json
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas   1593055 Jul 20 07:34 agis_ddmendpoints.agis.ALL.json
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas    528059 Jul 20 07:34 log.45668889._000058.job.log.tgz.1
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas      7809 Jul 20 07:34 heartbeat.json
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas        29 Jul 20 07:35 wrapper_checkpoint.txt
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas      8192 Jul 20 07:35 boinc_mmap_file
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas       822 Jul 20 07:35 pilotlog.txt
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas   2111494 Jul 20 07:35 log.45668889._000058.job.log.1
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas       357 Jul 20 07:35 output.list
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas       620 Jul 20 07:35 runtime_log
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas   2662400 Jul 20 07:35 result.tar.gz
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas      8733 Jul 20 07:35 runtime_log.err
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas       779 Jul 20 07:35 4cdLDmncUx7n9Rq4apOajLDm4fhM0noT9bVof3QYDmwasKDmAZWNJo.diag
[2025-07-20 07:35:25] -rw-r--r--. 1 boincer umatlas     23403 Jul 20 07:35 stderr.txt
[2025-07-20 07:35:25] HITS file was successfully produced:
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas 226337261 Jul 20 07:34 shared/HITS.pool.root.1
[2025-07-20 07:35:25]  *** Contents of shared directory: ***
[2025-07-20 07:35:25] total 524692
[2025-07-20 07:35:25] -rw-r--r--. 3 boincer umatlas 307713275 Jul 19 17:54 ATLAS.root_0
[2025-07-20 07:35:25] -rw-r--r--. 2 boincer umatlas     15095 Jul 19 17:54 start_atlas.sh
[2025-07-20 07:35:25] -rw-r--r--. 2 boincer umatlas    542865 Jul 19 17:54 input.tar.gz
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas 226337261 Jul 20 07:34 HITS.pool.root.1
[2025-07-20 07:35:25] -rw-------. 1 boincer umatlas   2662400 Jul 20 07:35 result.tar.gz
07:35:27 (115079): run_atlas exited; CPU time 71169.967377
07:35:27 (115079): called boinc_finish(0)

</stderr_txt>
]]>

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