Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:53:11 (748850): wrapper (7.7.26015): starting
17:53:11 (748850): wrapper: running run_atlas (--nthreads 8)
[2025-07-19 17:53:11] Arguments: --nthreads 8
[2025-07-19 17:53:11] Threads: 8
[2025-07-19 17:53:11] Checking for CVMFS
[2025-07-19 17:53:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-19 17:53:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-19 17:53:11] Running cvmfs_config stat atlas.cern.ch
[2025-07-19 17:53:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-19 17:53:12] 2.13.0.0 104956 16279 332464 148519 1 547 40513356 40960001 40759 16776704 0 239155150 99.731 175241824 30486 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-19 17:53:12] CVMFS is ok
[2025-07-19 17:53:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-19 17:53:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-19 17:53:12] Further information can be found at the LHC@home message board.
[2025-07-19 17:53:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-19 17:53:12] Checking for apptainer binary...
[2025-07-19 17:53:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-19 17:53:12] Running /usr/bin/apptainer --version
[2025-07-19 17:53:12] apptainer version 1.4.1-1.el9
[2025-07-19 17:53:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-19 17:53:12] c8-7-4.aglt2.org
[2025-07-19 17:53:12] apptainer works
[2025-07-19 17:53:12] Set ATHENA_PROC_NUMBER=8
[2025-07-19 17:53:12] Set ATHENA_CORE_NUMBER=8
[2025-07-19 17:53:12] Starting ATLAS job with PandaID=6739113172
[2025-07-19 17:53:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-19 19:35:47]  *** The last 200 lines of the pilot log: ***
[2025-07-19 19:35:47]  status_code=0
[2025-07-19 19:35:47]  storage_token=
[2025-07-19 19:35:47]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6739113172/log.45668738._000131.job.log.tgz.1
[2025-07-19 19:35:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/0a/log.45668738._000131.job.log.tgz.1
[2025-07-19 19:35:47]  workdir=None
[2025-07-19 19:35:47] ]
[2025-07-19 19:35:47] 2025-07-19 23:34:47,425 | INFO     | transferring file log.45668738._000131.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6739113172/log.45668738._000131.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-19 19:35:47] 2025-07-19 23:34:47,425 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6739113172/log.45668738._000131.job.log.tgz.1 /tmp/boinchome/slots/2/log.45668738._000131.job
[2025-07-19 19:35:47] 2025-07-19 23:34:47,500 | INFO     | adding to output.list: log.45668738._000131.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/0a/log.45668738._000131.job.log.tg
[2025-07-19 19:35:47] 2025-07-19 23:34:47,501 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-19 19:35:47] 2025-07-19 23:34:47,501 | INFO     | summary of transferred files:
[2025-07-19 19:35:47] 2025-07-19 23:34:47,501 | INFO     |  -- lfn=log.45668738._000131.job.log.tgz.1, status_code=0, status=transferred
[2025-07-19 19:35:47] 2025-07-19 23:34:47,501 | INFO     | stage-out finished correctly
[2025-07-19 19:35:47] 2025-07-19 23:34:49,412 | INFO     | monitor loop #378: job 0:6739113172 is in state 'finished'
[2025-07-19 19:35:47] 2025-07-19 23:34:49,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-19 19:35:47] 2025-07-19 23:34:49,497 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-19 19:35:47] 2025-07-19 23:34:50,395 | INFO     | job 6739113172 has state=finished
[2025-07-19 19:35:47] 2025-07-19 23:34:50,395 | INFO     | preparing for final server update for job 6739113172 in state='finished'
[2025-07-19 19:35:47] 2025-07-19 23:34:50,395 | INFO     | this job has now completed (state=finished)
[2025-07-19 19:35:47] 2025-07-19 23:34:50,395 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-19 19:35:47] 2025-07-19 23:34:50,395 | INFO     | log transfer has been attempted: DONE
[2025-07-19 19:35:47] 2025-07-19 23:34:50,395 | INFO     | job 6739113172 has finished - writing final server update
[2025-07-19 19:35:47] 2025-07-19 23:34:50,395 | INFO     | total number of processed events: 400 (read)
[2025-07-19 19:35:47] 2025-07-19 23:34:50,396 | INFO     | executing command: lscpu
[2025-07-19 19:35:47] 2025-07-19 23:34:50,567 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-19 19:35:47] 2025-07-19 23:34:51,917 | INFO     | monitor loop #379: job 0:6739113172 is in state 'finished'
[2025-07-19 19:35:47] 2025-07-19 23:34:51,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-19 19:35:47] 2025-07-19 23:34:54,428 | INFO     | monitor loop #380: job 0:6739113172 is in state 'finished'
[2025-07-19 19:35:47] 2025-07-19 23:34:54,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-19 19:35:47] 2025-07-19 23:34:56,933 | INFO     | monitor loop #381: job 0:6739113172 is in state 'finished'
[2025-07-19 19:35:47] 2025-07-19 23:34:56,934 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-19 19:35:47] 2025-07-19 23:34:57,952 | INFO     | PID=761097 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-19 19:35:47] 2025-07-19 23:34:57,952 | INFO     | .. there are 107 such processes running
[2025-07-19 19:35:47] 2025-07-19 23:34:59,445 | INFO     | monitor loop #382: job 0:6739113172 is in state 'finished'
[2025-07-19 19:35:47] 2025-07-19 23:34:59,446 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-19 19:35:47] 2025-07-19 23:35:01,488 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-19 19:35:47] 2025-07-19 23:35:01,493 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9911406250044
[2025-07-19 19:35:47] 2025-07-19 23:35:01,505 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6739113172/memory_monitor_summary.json (trf name=prmon)
[2025-07-19 19:35:47] 2025-07-19 23:35:01,505 | INFO     | extracted standard info from prmon json
[2025-07-19 19:35:47] 2025-07-19 23:35:01,505 | INFO     | extracted standard memory fields from prmon json
[2025-07-19 19:35:47] 2025-07-19 23:35:01,505 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-19 19:35:47] 2025-07-19 23:35:01,506 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-19 19:35:47] 2025-07-19 23:35:01,506 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-19 19:35:47] 2025-07-19 23:35:01,507 | INFO     | fitting pss+swap vs Time
[2025-07-19 19:35:47] 2025-07-19 23:35:01,507 | INFO     | sum of square deviations: 241429643.0
[2025-07-19 19:35:47] 2025-07-19 23:35:01,507 | INFO     | sum of deviations: 703596295.5
[2025-07-19 19:35:47] 2025-07-19 23:35:01,507 | INFO     | mean x: 1752965184.5
[2025-07-19 19:35:47] 2025-07-19 23:35:01,507 | INFO     | mean y: 2178276.945652174
[2025-07-19 19:35:47] 2025-07-19 23:35:01,507 | INFO     | -- intersect: -5106472817.54598
[2025-07-19 19:35:47] 2025-07-19 23:35:01,507 | INFO     | intersect: -5106472817.54598
[2025-07-19 19:35:47] 2025-07-19 23:35:01,507 | INFO     | chi2: 0.031874092495838606
[2025-07-19 19:35:47] 2025-07-19 23:35:01,507 | INFO     | -- intersect: -5106472817.54598
[2025-07-19 19:35:47] 2025-07-19 23:35:01,507 | INFO     | current memory leak: 2.91 B/s (using 92 data points, chi2=0.03)
[2025-07-19 19:35:47] 2025-07-19 23:35:01,508 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2025-07-19 19:35:47] 2025-07-19 23:35:01,508 | INFO     | ..............................
[2025-07-19 19:35:47] 2025-07-19 23:35:01,508 | INFO     | . Timing measurements:
[2025-07-19 19:35:47] 2025-07-19 23:35:01,508 | INFO     | . get job = 0 s
[2025-07-19 19:35:47] 2025-07-19 23:35:01,508 | INFO     | . initial setup = 4 s
[2025-07-19 19:35:47] 2025-07-19 23:35:01,508 | INFO     | . payload setup = 21 s
[2025-07-19 19:35:47] 2025-07-19 23:35:01,508 | INFO     | . stage-in = 0 s
[2025-07-19 19:35:47] 2025-07-19 23:35:01,508 | INFO     | . payload execution = 5998 s
[2025-07-19 19:35:47] 2025-07-19 23:35:01,508 | INFO     | . stage-out = 0 s
[2025-07-19 19:35:47] 2025-07-19 23:35:01,508 | INFO     | . log creation = 0 s
[2025-07-19 19:35:47] 2025-07-19 23:35:01,508 | INFO     | ..............................
[2025-07-19 19:35:47] 2025-07-19 23:35:01,554 | INFO     | 
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | job summary report
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | --------------------------------------------------
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | PanDA job id: 6739113172
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | task id: 45668738
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | errors: (none)
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | pilot state: finished 
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | transexitcode: 0
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | exeerrorcode: 0
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | exeerrordiag: 
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | exitcode: 0
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | exitmsg: OK
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | cpuconsumptiontime: 31369 s
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | nevents: 400
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | neventsw: 0
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | pid: 799328
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | pgrp: 799328
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | corecount: 8
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | event service: False
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | sizes: {0: 2397175, 1: 2397430, 11: 2397430, 18: 2397720, 22: 2397748, 6024: 2424504, 6025: 2424631, 6026: 2433685, 6028: 2433741, 6040: 2433935}
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | --------------------------------------------------
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | 
[2025-07-19 19:35:47] 2025-07-19 23:35:01,555 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,577 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-19 19:35:47] 2025-07-19 23:35:01,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,577 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-19 19:35:47] 2025-07-19 23:35:01,577 | INFO     | job 6739113172 has completed (purged errors)
[2025-07-19 19:35:47] 2025-07-19 23:35:01,577 | INFO     | overall cleanup function is called
[2025-07-19 19:35:47] 2025-07-19 23:35:02,585 | INFO     | --- collectZombieJob: --- 10, [799328]
[2025-07-19 19:35:47] 2025-07-19 23:35:02,585 | INFO     | zombie collector waiting for pid 799328
[2025-07-19 19:35:47] 2025-07-19 23:35:02,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-19 19:35:47] 2025-07-19 23:35:02,585 | INFO     | collected zombie processes
[2025-07-19 19:35:47] 2025-07-19 23:35:02,585 | INFO     | will attempt to kill all subprocesses of pid=799328
[2025-07-19 19:35:47] 2025-07-19 23:35:03,218 | INFO     | process IDs to be killed: [799328] (in reverse order)
[2025-07-19 19:35:47] 2025-07-19 23:35:03,451 | WARNING  | found no corresponding commands to process id(s)
[2025-07-19 19:35:47] 2025-07-19 23:35:03,451 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-19 19:35:47] 2025-07-19 23:35:03,482 | INFO     | did not find any defunct processes belonging to 799328
[2025-07-19 19:35:47] 2025-07-19 23:35:03,512 | INFO     | did not find any defunct processes belonging to 799328
[2025-07-19 19:35:47] 2025-07-19 23:35:03,512 | INFO     | ready for new job
[2025-07-19 19:35:47] 2025-07-19 23:35:03,512 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-19 19:35:47] 2025-07-19 23:35:03,513 | INFO     | ***************************************
[2025-07-19 19:35:47] 2025-07-19 23:35:03,513 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-19 19:35:47] 2025-07-19 23:35:03,513 | INFO     | ***************************************
[2025-07-19 19:35:47] 2025-07-19 23:35:03,513 | INFO     | 
[2025-07-19 19:35:47] 2025-07-19 23:35:03,519 | INFO     | architecture information:
[2025-07-19 19:35:47] 2025-07-19 23:35:03,519 | INFO     | executing command: cat /etc/os-release
[2025-07-19 19:35:47] 2025-07-19 23:35:03,543 | INFO     | cat /etc/os-release:
[2025-07-19 19:35:47] NAME="CentOS Linux"
[2025-07-19 19:35:47] VERSION="7 (Core)"
[2025-07-19 19:35:47] ID="centos"
[2025-07-19 19:35:47] ID_LIKE="rhel fedora"
[2025-07-19 19:35:47] VERSION_ID="7"
[2025-07-19 19:35:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-19 19:35:47] ANSI_COLOR="0;31"
[2025-07-19 19:35:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-19 19:35:47] HOME_URL="https://www.centos.org/"
[2025-07-19 19:35:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-19 19:35:47] 
[2025-07-19 19:35:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-19 19:35:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-19 19:35:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-19 19:35:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-19 19:35:47] 
[2025-07-19 19:35:47] 2025-07-19 23:35:03,543 | INFO     | ***************************************
[2025-07-19 19:35:47] 2025-07-19 23:35:04,047 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-19 19:35:47] 2025-07-19 23:35:04,086 | INFO     | sufficient remaining disk space (170978705408 B)
[2025-07-19 19:35:47] 2025-07-19 23:35:04,086 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-19 19:35:47] 2025-07-19 23:35:04,088 | INFO     | current server update state: UPDATING_FINAL
[2025-07-19 19:35:47] 2025-07-19 23:35:04,088 | INFO     | update_server=False
[2025-07-19 19:35:47] 2025-07-19 23:35:04,088 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-19 19:35:47] 2025-07-19 23:35:04,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-19 19:35:47] 2025-07-19 23:35:04,457 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-19 19:35:47] 2025-07-19 23:35:04,458 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-19 19:35:47] 2025-07-19 23:35:04,458 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-19 19:35:47] 2025-07-19 23:35:04,458 | INFO     | will abort loop
[2025-07-19 19:35:47] 2025-07-19 23:35:04,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-19 19:35:47] 2025-07-19 23:35:04,727 | INFO     | all payload control threads have been joined
[2025-07-19 19:35:47] 2025-07-19 23:35:04,836 | INFO     | all data control threads have been joined
[2025-07-19 19:35:47] 2025-07-19 23:35:05,026 | INFO     | all job control threads have been joined
[2025-07-19 19:35:47] 2025-07-19 23:35:05,094 | INFO     | [job] retrieve thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:05,131 | INFO     | [data] copytool_in thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:05,345 | INFO     | [payload] execute_payloads thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:05,426 | INFO     | [job] create_data_payload thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:05,464 | INFO     | [job] job monitor thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:05,589 | INFO     | [payload] validate_post thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:05,733 | INFO     | [payload] control thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:05,842 | INFO     | [data] control thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:06,032 | INFO     | [job] control thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:06,092 | INFO     | [job] validate thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:06,102 | INFO     | [data] copytool_out thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:06,251 | INFO     | [payload] failed_post thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:06,518 | INFO     | [payload] validate_pre thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:06,550 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:06,568 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-19 19:35:47] 2025-07-19 23:35:07,574 | INFO     | [job] queue monitor thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:08,603 | INFO     | [data] queue_monitor thread has finished
[2025-07-19 19:35:47] 2025-07-19 23:35:09,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139693995951936)>', '<ExcThread(monitor, started 139693005993728)>']
[2025-07-19 19:35:47] 2025-07-19 23:35:14,653 | INFO     | all workflow threads have been joined
[2025-07-19 19:35:47] 2025-07-19 23:35:14,654 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-19 19:35:47] 2025-07-19 23:35:14,654 | INFO     | traces error code: 0
[2025-07-19 19:35:47] 2025-07-19 23:35:14,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-19 19:35:47] 2025-07-19 23:35:34,752 | INFO     | PID=761097 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-19 19:35:47] 2025-07-19 23:35:34,752 | INFO     | .. there are 106 such processes running
[2025-07-19 19:35:47] 2025-07-19 23:35:34,753 | INFO     | found 0 job(s) in 20 queues
[2025-07-19 19:35:47] 2025-07-19 23:35:34,753 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-19 19:35:47] 2025-07-19 23:35:34,753 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-19 19:35:47] 2025-07-19 23:35:34,753 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-19 19:35:47] 2025-07-19 23:35:34,753 | INFO     | [monitor] control thread has ended
[2025-07-19 19:35:47] 2025-07-19 23:35:34,875 [wrapper] ==== pilot stdout END ====
[2025-07-19 19:35:47] 2025-07-19 23:35:34,878 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-19 19:35:47] 2025-07-19 23:35:34,880 [wrapper] pilotpid: 761097
[2025-07-19 19:35:47] 2025-07-19 23:35:34,882 [wrapper] Pilot exit status: 0
[2025-07-19 19:35:47] 2025-07-19 23:35:34,904 [wrapper] pandaids: 6739113172
[2025-07-19 19:35:47] 2025-07-19 23:35:35,135 [wrapper] cleanup supervisor_pilot 1127854 761098
[2025-07-19 19:35:47] 2025-07-19 23:35:35,177 [wrapper] Test setup, not cleaning
[2025-07-19 19:35:47] 2025-07-19 23:35:35,194 [wrapper] apfmon messages muted
[2025-07-19 19:35:47] 2025-07-19 23:35:35,204 [wrapper] ==== wrapper stdout END ====
[2025-07-19 19:35:47] 2025-07-19 23:35:35,206 [wrapper] ==== wrapper stderr END ====
[2025-07-19 19:35:47]  *** Error codes and diagnostics ***
[2025-07-19 19:35:47]     "exeErrorCode": 0,
[2025-07-19 19:35:47]     "exeErrorDiag": "",
[2025-07-19 19:35:47]     "pilotErrorCode": 0,
[2025-07-19 19:35:47]     "pilotErrorDiag": "",
[2025-07-19 19:35:47]  *** Listing of results directory ***
[2025-07-19 19:35:47] total 522316
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas    530466 Jul 19 17:46 pilot3.tar.gz
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas      5112 Jul 19 17:49 queuedata.json
[2025-07-19 19:35:47] -rwx------. 1 boincer umatlas     36292 Jul 19 17:50 runpilot2-wrapper.sh
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas       100 Jul 19 17:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-19 19:35:47] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 19 17:53 run_atlas
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas       105 Jul 19 17:53 job.xml
[2025-07-19 19:35:47] -rw-r--r--. 2 boincer umatlas 304480826 Jul 19 17:53 EVNT.45668735._000003.pool.root.1
[2025-07-19 19:35:47] -rw-r--r--. 2 boincer umatlas     15095 Jul 19 17:53 start_atlas.sh
[2025-07-19 19:35:47] drwxrwx--x. 2 boincer umatlas      4096 Jul 19 17:53 shared
[2025-07-19 19:35:47] -rw-r--r--. 2 boincer umatlas    542862 Jul 19 17:53 input.tar.gz
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas         0 Jul 19 17:53 boinc_lockfile
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas      2510 Jul 19 17:53 pandaJob.out
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas    978446 Jul 19 17:53 agis_schedconf.cvmfs.json
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas   1593055 Jul 19 17:53 agis_ddmendpoints.agis.ALL.json
[2025-07-19 19:35:47] drwx------. 4 boincer umatlas      4096 Jul 19 17:53 pilot3
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas      7159 Jul 19 19:29 init_data.xml
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas 224833864 Jul 19 19:34 HITS.45668738._000131.pool.root.1
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas       529 Jul 19 19:34 boinc_task_state.xml
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas      1030 Jul 19 19:34 memory_monitor_summary.json
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas    306093 Jul 19 19:34 log.45668738._000131.job.log.tgz.1
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas      7756 Jul 19 19:35 heartbeat.json
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas       823 Jul 19 19:35 pilotlog.txt
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas        95 Jul 19 19:35 pilot_heartbeat.json
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas    523366 Jul 19 19:35 log.45668738._000131.job.log.1
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas       357 Jul 19 19:35 output.list
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas       620 Jul 19 19:35 runtime_log
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas    849920 Jul 19 19:35 result.tar.gz
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas      8650 Jul 19 19:35 runtime_log.err
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas       650 Jul 19 19:35 i9hLDmgcUx7n9Rq4apOajLDm4fhM0noT9bVof3QYDmWZsKDmubFwPn.diag
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas        27 Jul 19 19:35 wrapper_checkpoint.txt
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas      8192 Jul 19 19:35 boinc_mmap_file
[2025-07-19 19:35:47] -rw-r--r--. 1 boincer umatlas     22010 Jul 19 19:35 stderr.txt
[2025-07-19 19:35:47] HITS file was successfully produced:
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas 224833864 Jul 19 19:34 shared/HITS.pool.root.1
[2025-07-19 19:35:47]  *** Contents of shared directory: ***
[2025-07-19 19:35:47] total 518304
[2025-07-19 19:35:47] -rw-r--r--. 2 boincer umatlas 304480826 Jul 19 17:53 ATLAS.root_0
[2025-07-19 19:35:47] -rw-r--r--. 2 boincer umatlas     15095 Jul 19 17:53 start_atlas.sh
[2025-07-19 19:35:47] -rw-r--r--. 2 boincer umatlas    542862 Jul 19 17:53 input.tar.gz
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas 224833864 Jul 19 19:34 HITS.pool.root.1
[2025-07-19 19:35:47] -rw-------. 1 boincer umatlas    849920 Jul 19 19:35 result.tar.gz
19:35:48 (748850): run_atlas exited; CPU time 31624.387022
19:35:48 (748850): called boinc_finish(0)

</stderr_txt>
]]>

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