Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-20 01:19:42 (15552): Detected: vboxwrapper 26206
2025-07-20 01:19:42 (15552): Detected: BOINC client v7.16.5
2025-07-20 01:19:43 (15552): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-07-20 01:19:43 (15552): Successfully copied 'init_data.xml' to the shared directory.
2025-07-20 01:19:44 (15552): Create VM. (boinc_4c2f504ed2d12756, slot#6)
2025-07-20 01:19:44 (15552): Setting Memory Size for VM. (4400MB)
2025-07-20 01:19:44 (15552): Setting CPU Count for VM. (4)
2025-07-20 01:19:45 (15552): Setting Chipset Options for VM.
2025-07-20 01:19:45 (15552): Setting Graphics Controller Options for VM.
2025-07-20 01:19:45 (15552): Setting Boot Options for VM.
2025-07-20 01:19:45 (15552): Setting Network Configuration for NAT.
2025-07-20 01:19:46 (15552): Enabling VM Network Access.
2025-07-20 01:19:46 (15552): Disabling USB Support for VM.
2025-07-20 01:19:46 (15552): Disabling COM Port Support for VM.
2025-07-20 01:19:46 (15552): Disabling LPT Port Support for VM.
2025-07-20 01:19:47 (15552): Disabling Audio Support for VM.
2025-07-20 01:19:47 (15552): Disabling Clipboard Support for VM.
2025-07-20 01:19:47 (15552): Disabling Drag and Drop Support for VM.
2025-07-20 01:19:47 (15552): Adding storage controller(s) to VM.
2025-07-20 01:19:48 (15552): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-20 01:19:48 (15552): Adding VirtualBox Guest Additions to VM.
2025-07-20 01:19:48 (15552): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-20 01:19:49 (15552): forwarding host port 65484 to guest port 80
2025-07-20 01:19:49 (15552): Enabling remote desktop for VM.
2025-07-20 01:19:49 (15552): Enabling shared directory for VM.
2025-07-20 01:19:50 (15552): Starting VM using VBoxManage interface. (boinc_4c2f504ed2d12756, slot#6)
2025-07-20 01:19:54 (15552): Successfully started VM. (PID = '8624')
2025-07-20 01:19:54 (15552): Reporting VM Process ID to BOINC.
2025-07-20 01:19:54 (15552): Guest Log: BIOS: VirtualBox 5.2.44
2025-07-20 01:19:54 (15552): Guest Log: CPUID EDX: 0x178bfbff
2025-07-20 01:19:54 (15552): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-20 01:19:54 (15552): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-20 01:19:54 (15552): Detected: Web Application Enabled (http://localhost:65484)
2025-07-20 01:19:54 (15552): Detected: Remote Desktop Enabled (localhost:65485)
2025-07-20 01:19:54 (15552): Preference change detected
2025-07-20 01:19:54 (15552): Setting CPU throttle for VM. (100%)
2025-07-20 01:19:55 (15552): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-20 01:19:56 (15552): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-20 01:19:56 (15552): Guest Log: BIOS: Booting from Hard Disk...
2025-07-20 01:19:59 (15552): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-20 01:19:59 (15552): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-20 01:19:59 (15552): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-20 01:20:07 (15552): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-20 01:20:07 (15552): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-20 01:20:16 (15552): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-20 01:20:16 (15552): Guest Log: 00:00:00.000162 main     Log opened 2025-07-20T01:20:14.167725000Z
2025-07-20 01:20:16 (15552): Guest Log: 00:00:00.000265 main     OS Product: Linux
2025-07-20 01:20:16 (15552): Guest Log: 00:00:00.000331 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-20 01:20:16 (15552): Guest Log: 00:00:00.000366 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-20 01:20:16 (15552): Guest Log: 00:00:00.000393 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-20 01:20:16 (15552): Guest Log: 00:00:00.000394 main     Process ID: 1302
2025-07-20 01:20:16 (15552): Guest Log: 00:00:00.000395 main     Package type: LINUX_64BITS_GENERIC
2025-07-20 01:20:16 (15552): Guest Log: 00:00:00.001405 main     5.2.32 r132073 started. Verbose level = 0
2025-07-20 01:20:16 (15552): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-20 01:20:16 (15552): Guest Log: [INFO] Mounting shared directory
2025-07-20 01:20:16 (15552): Guest Log: [INFO] Checking for init_data.xml
2025-07-20 01:20:20 (15552): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-20 01:20:20 (15552): Guest Log: [INFO] Detected branch: prod
2025-07-20 01:20:20 (15552): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-20 01:20:20 (15552): Guest Log: Copying input files
2025-07-20 01:20:26 (15552): Guest Log: 00:00:10.015388 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 200 463 000ns (GuestNow=1 752 963 625 970 680 000 ns GuestLast=1 752 974 414 171 143 000 ns fSetTimeLastLoop=true )
2025-07-20 01:20:26 (15552): Guest Log: Copied input files into RunAtlas.
2025-07-20 01:20:26 (15552): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-20 01:20:26 (15552): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-20 01:20:26 (15552): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-20 01:20:26 (15552): Guest Log: Further information can be found at the LHC@home message board.
2025-07-20 01:20:34 (15552): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-20 01:20:34 (15552): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-20 01:20:34 (15552): Guest Log: 2.6.3.0 1577 0 32204 148521 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-20 01:20:35 (15552): Guest Log: copied the webapp to /var/www
2025-07-20 01:20:35 (15552): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-20 01:20:35 (15552): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-20 01:20:35 (15552): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-20 01:20:35 (15552): Guest Log:  *** Starting ATLAS job. (PandaID=6739113095 taskID=45668738) ***
2025-07-20 02:59:58 (15552): Status Report: Elapsed Time: '6000.000000'
2025-07-20 02:59:58 (15552): Status Report: CPU Time: '21934.906250'
2025-07-20 04:40:02 (15552): Status Report: Elapsed Time: '12000.000000'
2025-07-20 04:40:02 (15552): Status Report: CPU Time: '45528.984375'
2025-07-20 06:20:05 (15552): Status Report: Elapsed Time: '18000.000000'
2025-07-20 06:20:05 (15552): Status Report: CPU Time: '68889.468750'
2025-07-20 06:22:02 (15552): Guest Log:  *** Job finished ***
2025-07-20 06:22:02 (15552): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:46,217 | INFO     | all workflow threads have been joined
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:46,217 | INFO     | end of generic workflow (traces error code: 0)
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:46,217 | INFO     | traces error code: 0
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:46,217 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:58,866 | INFO     | PID=5880 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:58,867 | INFO     | found 0 job(s) in 20 queues
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:58,867 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:58,867 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:58,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:58,867 | INFO     | [monitor] control thread has ended
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:58,969 [wrapper] ==== pilot stdout END ====
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:58,974 [wrapper] ==== wrapper stdout RESUME ====
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:58,979 [wrapper] pilotpid: 5880
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:58,984 [wrapper] Pilot exit status: 0
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:59,030 [wrapper] pandaids: 6739113095
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:59,058 [wrapper] cleanup supervisor_pilot 20137 5881
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:59,063 [wrapper] Test setup, not cleaning
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:59,068 [wrapper] apfmon messages muted
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:59,073 [wrapper] ==== wrapper stdout END ====
2025-07-20 06:22:02 (15552): Guest Log: 2025-07-20 03:21:59,078 [wrapper] ==== wrapper stderr END ====
2025-07-20 06:22:02 (15552): Guest Log:  *** Error codes and diagnostics ***
2025-07-20 06:22:02 (15552): Guest Log:     "exeErrorCode": 0,
2025-07-20 06:22:02 (15552): Guest Log:     "exeErrorDiag": "",
2025-07-20 06:22:02 (15552): Guest Log:     "pilotErrorCode": 0,
2025-07-20 06:22:02 (15552): Guest Log:     "pilotErrorDiag": "",
2025-07-20 06:22:02 (15552): Guest Log:  *** Listing of results directory ***
2025-07-20 06:22:02 (15552): Guest Log: total 226340
2025-07-20 06:22:02 (15552): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 19 21:46 pilot3.tar.gz
2025-07-20 06:22:02 (15552): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 19 21:49 runpilot2-wrapper.sh
2025-07-20 06:22:02 (15552): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 19 21:49 queuedata.json
2025-07-20 06:22:02 (15552): Guest Log: -rwxr-xr-x. 1 atlas atlas      8857 Jul 19 22:20 init_data.xml
2025-07-20 06:22:02 (15552): Guest Log: -rwxr-xr-x. 1 atlas atlas    542864 Jul 19 22:20 input.tar.gz
2025-07-20 06:22:02 (15552): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 19 22:20 start_atlas.sh
2025-07-20 06:22:02 (15552): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 19 22:20 EVNT.45668735._000009.pool.root.1 -> /data/./ATLAS.root_0
2025-07-20 06:22:02 (15552): Guest Log: -rw-r--r--. 1 atlas atlas      2508 Jul 19 22:20 pandaJob.out
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas    978446 Jul 19 22:21 agis_schedconf.cvmfs.json
2025-07-20 06:22:02 (15552): Guest Log: drwx------. 4 atlas atlas      4096 Jul 19 22:21 pilot3
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas 224259430 Jul 20 03:20 HITS.45668738._000054.pool.root.1
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas      1031 Jul 20 03:21 memory_monitor_summary.json
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas   1593055 Jul 20 03:21 agis_ddmendpoints.agis.ALL.json
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas    345840 Jul 20 03:21 log.45668738._000054.job.log.tgz.1
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas      7809 Jul 20 03:21 heartbeat.json
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas        95 Jul 20 03:21 pilot_heartbeat.json
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas       744 Jul 20 03:21 pilotlog.txt
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas   1504686 Jul 20 03:21 log.45668738._000054.job.log.1
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas       357 Jul 20 03:21 output.list
2025-07-20 06:22:02 (15552): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 20 03:21 runtime_log
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas   1873920 Jul 20 03:21 result.tar.gz
2025-07-20 06:22:02 (15552): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Jul 20 03:21 runtime_log.err
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas       671 Jul 20 03:21 8G7MDmScUx7n9Rq4apOajLDm4fhM0noT9bVof3QYDmZYsKDmq3Wb5m.diag
2025-07-20 06:22:02 (15552): Guest Log: Looking for outputfile HITS.45668738._000054.pool.root.1
2025-07-20 06:22:02 (15552): Guest Log: HITS file was successfully produced
2025-07-20 06:22:02 (15552): Guest Log: -rw-------. 1 atlas atlas 224259430 Jul 20 03:20 /home/atlas/RunAtlas/HITS.45668738._000054.pool.root.1
2025-07-20 06:22:03 (15552): Guest Log: Successfully finished the ATLAS job!
2025-07-20 06:22:03 (15552): Guest Log: Copying the results back to the shared directory!
2025-07-20 06:22:03 (15552): Guest Log:  *** Contents of shared directory: ***
2025-07-20 06:22:03 (15552): Guest Log: total 521824
2025-07-20 06:22:03 (15552): Guest Log: -rwxrwxrwx. 1 root root 307634751 Jul 19 22:19 ATLAS.root_0
2025-07-20 06:22:03 (15552): Guest Log: -rwxrwxrwx. 1 root root 224259430 Jul 20 03:22 HITS.pool.root.1
2025-07-20 06:22:03 (15552): Guest Log: -rwxrwxrwx. 1 root root      8857 Jul 19 22:19 init_data.xml
2025-07-20 06:22:03 (15552): Guest Log: -rwxrwxrwx. 1 root root    542864 Jul 19 21:52 input.tar.gz
2025-07-20 06:22:03 (15552): Guest Log: -rwxrwxrwx. 1 root root   1873920 Jul 20 03:22 result.tar.gz
2025-07-20 06:22:03 (15552): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 19 21:52 start_atlas.sh
2025-07-20 06:22:03 (15552): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-20 06:22:03 (15552): VM Completion File Detected.
2025-07-20 06:22:03 (15552): Powering off VM.
2025-07-20 06:22:03 (15552): Successfully stopped VM.
2025-07-20 06:22:03 (15552): Deregistering VM. (boinc_4c2f504ed2d12756, slot#6)
2025-07-20 06:22:03 (15552): Removing network bandwidth throttle group from VM.
2025-07-20 06:22:04 (15552): Removing VM from VirtualBox.
06:22:09 (15552): called boinc_finish(0)

</stderr_txt>
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