Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:50:37 (24533): wrapper (7.7.26015): starting
17:50:37 (24533): wrapper: running run_atlas (--nthreads 10)
[2025-07-19 17:50:37] Arguments: --nthreads 10
[2025-07-19 17:50:37] Threads: 10
[2025-07-19 17:50:37] Checking for CVMFS
[2025-07-19 17:50:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-19 17:50:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-19 17:50:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-19 17:50:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-19 17:50:39] 2.13.0.0 116703 16273 289404 148519 1 115 31446423 32935936 18459 16776704 0 55545899 99.647 53612718 25300 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-19 17:50:39] CVMFS is ok
[2025-07-19 17:50:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-19 17:50:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-19 17:50:39] Further information can be found at the LHC@home message board.
[2025-07-19 17:50:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-19 17:50:39] Checking for apptainer binary...
[2025-07-19 17:50:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-19 17:50:39] Running /usr/bin/apptainer --version
[2025-07-19 17:50:39] apptainer version 1.4.1-1.el9
[2025-07-19 17:50:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-19 17:50:40] c-5-3.aglt2.org
[2025-07-19 17:50:40] apptainer works
[2025-07-19 17:50:40] Set ATHENA_PROC_NUMBER=10
[2025-07-19 17:50:40] Set ATHENA_CORE_NUMBER=10
[2025-07-19 17:50:41] Starting ATLAS job with PandaID=6739113091
[2025-07-19 17:50:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-20 06:00:01]  *** The last 200 lines of the pilot log: ***
[2025-07-20 06:00:01] 2025-07-20 09:59:22,738 | INFO     | PID=28615 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-20 06:00:01] 2025-07-20 09:59:22,738 | INFO     | .. there are 39 such processes running
[2025-07-20 06:00:01] 2025-07-20 09:59:24,510 | INFO     | monitor loop #2186: job 0:6739113091 is in state 'finished'
[2025-07-20 06:00:01] 2025-07-20 09:59:24,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-20 06:00:01] 2025-07-20 09:59:25,738 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-20 06:00:01] 2025-07-20 09:59:25,749 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.9561250000015
[2025-07-20 06:00:01] 2025-07-20 09:59:25,757 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6739113091/memory_monitor_summary.json (trf name=prmon)
[2025-07-20 06:00:01] 2025-07-20 09:59:25,758 | INFO     | extracted standard info from prmon json
[2025-07-20 06:00:01] 2025-07-20 09:59:25,758 | INFO     | extracted standard memory fields from prmon json
[2025-07-20 06:00:01] 2025-07-20 09:59:25,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-20 06:00:01] 2025-07-20 09:59:25,759 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-20 06:00:01] 2025-07-20 09:59:25,759 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-20 06:00:01] 2025-07-20 09:59:25,772 | INFO     | fitting pss+swap vs Time
[2025-07-20 06:00:01] 2025-07-20 09:59:25,773 | INFO     | sum of square deviations: 112395083309.82596
[2025-07-20 06:00:01] 2025-07-20 09:59:25,784 | INFO     | sum of deviations: 306603771898.4781
[2025-07-20 06:00:01] 2025-07-20 09:59:25,784 | INFO     | mean x: 1752983791.6086957
[2025-07-20 06:00:01] 2025-07-20 09:59:25,784 | INFO     | mean y: 2222590.858345021
[2025-07-20 06:00:01] 2025-07-20 09:59:25,784 | INFO     | -- intersect: -4779760986.68427
[2025-07-20 06:00:01] 2025-07-20 09:59:25,785 | INFO     | intersect: -4779760986.68427
[2025-07-20 06:00:01] 2025-07-20 09:59:25,786 | INFO     | chi2: 3.552023142069918
[2025-07-20 06:00:01] 2025-07-20 09:59:25,787 | INFO     | sum of square deviations: 110047208862.96039
[2025-07-20 06:00:01] 2025-07-20 09:59:25,798 | INFO     | sum of deviations: 364921552189.87524
[2025-07-20 06:00:01] 2025-07-20 09:59:25,798 | INFO     | mean x: 1752983639.1129944
[2025-07-20 06:00:01] 2025-07-20 09:59:25,798 | INFO     | mean y: 2226363.426553672
[2025-07-20 06:00:01] 2025-07-20 09:59:25,798 | INFO     | -- intersect: -5810747151.832499
[2025-07-20 06:00:01] 2025-07-20 09:59:25,798 | INFO     | intersect: -5810747151.832499
[2025-07-20 06:00:01] 2025-07-20 09:59:25,799 | INFO     | chi2: 2.7970294432015517
[2025-07-20 06:00:01] 2025-07-20 09:59:25,799 | INFO     | current chi2=2.7970294432015517 (change=21.25531475080421 %)
[2025-07-20 06:00:01] 2025-07-20 09:59:25,800 | INFO     | right removable region: 707
[2025-07-20 06:00:01] 2025-07-20 09:59:25,801 | INFO     | sum of square deviations: 110046944122.96034
[2025-07-20 06:00:01] 2025-07-20 09:59:25,812 | INFO     | sum of deviations: 160957712386.4519
[2025-07-20 06:00:01] 2025-07-20 09:59:25,812 | INFO     | mean x: 1752983944.1129944
[2025-07-20 06:00:01] 2025-07-20 09:59:25,812 | INFO     | mean y: 2232034.2443502825
[2025-07-20 06:00:01] 2025-07-20 09:59:25,812 | INFO     | -- intersect: -2561730897.605367
[2025-07-20 06:00:01] 2025-07-20 09:59:25,812 | INFO     | intersect: -2561730897.605367
[2025-07-20 06:00:01] 2025-07-20 09:59:25,813 | INFO     | chi2: 1.4064477022779762
[2025-07-20 06:00:01] 2025-07-20 09:59:25,814 | INFO     | current chi2=1.4064477022779762 (change=60.40432041052587 %)
[2025-07-20 06:00:01] 2025-07-20 09:59:25,815 | INFO     | sum of square deviations: 107731735786.0683
[2025-07-20 06:00:01] 2025-07-20 09:59:25,826 | INFO     | sum of deviations: 120432217891.76944
[2025-07-20 06:00:01] 2025-07-20 09:59:25,826 | INFO     | mean x: 1752984096.6173542
[2025-07-20 06:00:01] 2025-07-20 09:59:25,826 | INFO     | mean y: 2234699.1664295876
[2025-07-20 06:00:01] 2025-07-20 09:59:25,826 | INFO     | -- intersect: -1957408493.660776
[2025-07-20 06:00:01] 2025-07-20 09:59:25,827 | INFO     | intersect: -1957408493.660776
[2025-07-20 06:00:01] 2025-07-20 09:59:25,828 | INFO     | chi2: 1.2568030699146044
[2025-07-20 06:00:01] 2025-07-20 09:59:25,828 | INFO     | current chi2=1.2568030699146044 (change=10.639900233830051 %)
[2025-07-20 06:00:01] 2025-07-20 09:59:25,828 | INFO     | left removable region: 20
[2025-07-20 06:00:01] 2025-07-20 09:59:25,829 | INFO     | sum of square deviations: 100542229297.8428
[2025-07-20 06:00:01] 2025-07-20 09:59:25,839 | INFO     | sum of deviations: 160328793170.25763
[2025-07-20 06:00:01] 2025-07-20 09:59:25,840 | INFO     | mean x: 1752984218.6200874
[2025-07-20 06:00:01] 2025-07-20 09:59:25,840 | INFO     | mean y: 2240212.7059679767
[2025-07-20 06:00:01] 2025-07-20 09:59:25,840 | INFO     | -- intersect: -2793140854.3408103
[2025-07-20 06:00:01] 2025-07-20 09:59:25,840 | INFO     | intersect: -2793140854.3408103
[2025-07-20 06:00:01] 2025-07-20 09:59:25,841 | INFO     | chi2: 0.4520148506262462
[2025-07-20 06:00:01] 2025-07-20 09:59:25,841 | INFO     | -- intersect: -2793140854.3408103
[2025-07-20 06:00:01] 2025-07-20 09:59:25,841 | INFO     | current memory leak: 1.59 B/s (using 687 data points, chi2=0.45)
[2025-07-20 06:00:01] 2025-07-20 09:59:25,842 | INFO     | could have reported an average CPU frequency of 2599 MHz (27 samples)
[2025-07-20 06:00:01] 2025-07-20 09:59:25,842 | INFO     | ..............................
[2025-07-20 06:00:01] 2025-07-20 09:59:25,842 | INFO     | . Timing measurements:
[2025-07-20 06:00:01] 2025-07-20 09:59:25,842 | INFO     | . get job = 0 s
[2025-07-20 06:00:01] 2025-07-20 09:59:25,843 | INFO     | . initial setup = 6 s
[2025-07-20 06:00:01] 2025-07-20 09:59:25,843 | INFO     | . payload setup = 52 s
[2025-07-20 06:00:01] 2025-07-20 09:59:25,843 | INFO     | . stage-in = 0 s
[2025-07-20 06:00:01] 2025-07-20 09:59:25,843 | INFO     | . payload execution = 43498 s
[2025-07-20 06:00:01] 2025-07-20 09:59:25,843 | INFO     | . stage-out = 4 s
[2025-07-20 06:00:01] 2025-07-20 09:59:25,843 | INFO     | . log creation = 0 s
[2025-07-20 06:00:01] 2025-07-20 09:59:25,843 | INFO     | ..............................
[2025-07-20 06:00:01] 2025-07-20 09:59:25,949 | INFO     | 
[2025-07-20 06:00:01] 2025-07-20 09:59:25,949 | INFO     | job summary report
[2025-07-20 06:00:01] 2025-07-20 09:59:25,949 | INFO     | --------------------------------------------------
[2025-07-20 06:00:01] 2025-07-20 09:59:25,949 | INFO     | PanDA job id: 6739113091
[2025-07-20 06:00:01] 2025-07-20 09:59:25,949 | INFO     | task id: 45668738
[2025-07-20 06:00:01] 2025-07-20 09:59:25,950 | INFO     | errors: (none)
[2025-07-20 06:00:01] 2025-07-20 09:59:25,950 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-20 06:00:01] 2025-07-20 09:59:25,950 | INFO     | pilot state: finished 
[2025-07-20 06:00:01] 2025-07-20 09:59:25,950 | INFO     | transexitcode: 0
[2025-07-20 06:00:01] 2025-07-20 09:59:25,950 | INFO     | exeerrorcode: 0
[2025-07-20 06:00:01] 2025-07-20 09:59:25,950 | INFO     | exeerrordiag: 
[2025-07-20 06:00:01] 2025-07-20 09:59:25,950 | INFO     | exitcode: 0
[2025-07-20 06:00:01] 2025-07-20 09:59:25,950 | INFO     | exitmsg: OK
[2025-07-20 06:00:01] 2025-07-20 09:59:25,950 | INFO     | cpuconsumptiontime: 68135 s
[2025-07-20 06:00:01] 2025-07-20 09:59:25,950 | INFO     | nevents: 400
[2025-07-20 06:00:01] 2025-07-20 09:59:25,951 | INFO     | neventsw: 0
[2025-07-20 06:00:01] 2025-07-20 09:59:25,951 | INFO     | pid: 37833
[2025-07-20 06:00:01] 2025-07-20 09:59:25,951 | INFO     | pgrp: 37833
[2025-07-20 06:00:01] 2025-07-20 09:59:25,951 | INFO     | corecount: 10
[2025-07-20 06:00:01] 2025-07-20 09:59:25,951 | INFO     | event service: False
[2025-07-20 06:00:01] 2025-07-20 09:59:25,951 | INFO     | sizes: {0: 2397171, 1: 2397255, 2: 2397454, 14: 2397454, 25: 2397482, 36: 2397510, 38: 2397928, 47: 2397956, 43555: 2441350, 43560: 2450348, 43563: 2450404, 43585:
[2025-07-20 06:00:01] 2025-07-20 09:59:25,951 | INFO     | --------------------------------------------------
[2025-07-20 06:00:01] 2025-07-20 09:59:25,951 | INFO     | 
[2025-07-20 06:00:01] 2025-07-20 09:59:25,951 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-20 06:00:01] 2025-07-20 09:59:25,991 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,992 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,992 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,992 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,992 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,992 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,992 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,992 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,992 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,993 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,993 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-20 06:00:01] 2025-07-20 09:59:25,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,993 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-20 06:00:01] 2025-07-20 09:59:25,994 | INFO     | job 6739113091 has completed (purged errors)
[2025-07-20 06:00:01] 2025-07-20 09:59:25,994 | INFO     | overall cleanup function is called
[2025-07-20 06:00:01] 2025-07-20 09:59:27,007 | INFO     | --- collectZombieJob: --- 10, [37833]
[2025-07-20 06:00:01] 2025-07-20 09:59:27,007 | INFO     | zombie collector waiting for pid 37833
[2025-07-20 06:00:01] 2025-07-20 09:59:27,007 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-20 06:00:01] 2025-07-20 09:59:27,008 | INFO     | collected zombie processes
[2025-07-20 06:00:01] 2025-07-20 09:59:27,008 | INFO     | will attempt to kill all subprocesses of pid=37833
[2025-07-20 06:00:01] 2025-07-20 09:59:27,718 | INFO     | process IDs to be killed: [37833] (in reverse order)
[2025-07-20 06:00:01] 2025-07-20 09:59:28,029 | WARNING  | found no corresponding commands to process id(s)
[2025-07-20 06:00:01] 2025-07-20 09:59:28,030 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-20 06:00:01] 2025-07-20 09:59:28,055 | INFO     | did not find any defunct processes belonging to 37833
[2025-07-20 06:00:01] 2025-07-20 09:59:28,078 | INFO     | did not find any defunct processes belonging to 37833
[2025-07-20 06:00:01] 2025-07-20 09:59:28,078 | INFO     | ready for new job
[2025-07-20 06:00:01] 2025-07-20 09:59:28,078 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-20 06:00:01] 2025-07-20 09:59:28,081 | INFO     | ***************************************
[2025-07-20 06:00:01] 2025-07-20 09:59:28,081 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-20 06:00:01] 2025-07-20 09:59:28,081 | INFO     | ***************************************
[2025-07-20 06:00:01] 2025-07-20 09:59:28,081 | INFO     | 
[2025-07-20 06:00:01] 2025-07-20 09:59:28,097 | INFO     | architecture information:
[2025-07-20 06:00:01] 2025-07-20 09:59:28,099 | INFO     | executing command: cat /etc/os-release
[2025-07-20 06:00:01] 2025-07-20 09:59:28,198 | INFO     | cat /etc/os-release:
[2025-07-20 06:00:01] NAME="CentOS Linux"
[2025-07-20 06:00:01] VERSION="7 (Core)"
[2025-07-20 06:00:01] ID="centos"
[2025-07-20 06:00:01] ID_LIKE="rhel fedora"
[2025-07-20 06:00:01] VERSION_ID="7"
[2025-07-20 06:00:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-20 06:00:01] ANSI_COLOR="0;31"
[2025-07-20 06:00:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-20 06:00:01] HOME_URL="https://www.centos.org/"
[2025-07-20 06:00:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-20 06:00:01] 
[2025-07-20 06:00:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-20 06:00:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-20 06:00:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-20 06:00:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-20 06:00:01] 
[2025-07-20 06:00:01] 2025-07-20 09:59:28,198 | INFO     | ***************************************
[2025-07-20 06:00:01] 2025-07-20 09:59:28,702 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-20 06:00:01] 2025-07-20 09:59:28,860 | INFO     | sufficient remaining disk space (76360450048 B)
[2025-07-20 06:00:01] 2025-07-20 09:59:28,861 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-20 06:00:01] 2025-07-20 09:59:28,861 | INFO     | current server update state: UPDATING_FINAL
[2025-07-20 06:00:01] 2025-07-20 09:59:28,861 | INFO     | update_server=False
[2025-07-20 06:00:01] 2025-07-20 09:59:28,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-20 06:00:01] 2025-07-20 09:59:28,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-20 06:00:01] 2025-07-20 09:59:28,862 | INFO     | aborting loop
[2025-07-20 06:00:01] 2025-07-20 09:59:28,869 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-20 06:00:01] 2025-07-20 09:59:28,981 | INFO     | all data control threads have been joined
[2025-07-20 06:00:01] 2025-07-20 09:59:29,587 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-20 06:00:01] 2025-07-20 09:59:29,867 | INFO     | [job] retrieve thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:29,869 | INFO     | [job] job monitor thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:29,987 | INFO     | [data] control thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:30,037 | INFO     | all payload control threads have been joined
[2025-07-20 06:00:01] 2025-07-20 09:59:30,054 | INFO     | [payload] validate_post thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:30,381 | INFO     | all job control threads have been joined
[2025-07-20 06:00:01] 2025-07-20 09:59:30,469 | INFO     | [job] validate thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:30,636 | INFO     | [payload] validate_pre thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:30,661 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:30,731 | INFO     | [payload] execute_payloads thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:30,732 | INFO     | [job] create_data_payload thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:30,969 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-20 06:00:01] 2025-07-20 09:59:31,045 | INFO     | [payload] control thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:31,098 | INFO     | [payload] failed_post thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:31,098 | INFO     | [data] copytool_in thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:31,387 | INFO     | [job] control thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:31,593 | INFO     | [data] copytool_out thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:31,975 | INFO     | [job] queue monitor thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:32,885 | INFO     | [data] queue_monitor thread has finished
[2025-07-20 06:00:01] 2025-07-20 09:59:33,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140199418324800)>', '<ExcThread(monitor, started 140198763538176)>']
[2025-07-20 06:00:01] 2025-07-20 09:59:38,715 | INFO     | all workflow threads have been joined
[2025-07-20 06:00:01] 2025-07-20 09:59:38,715 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-20 06:00:01] 2025-07-20 09:59:38,715 | INFO     | traces error code: 0
[2025-07-20 06:00:01] 2025-07-20 09:59:38,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-20 06:00:01] 2025-07-20 09:59:59,563 | INFO     | PID=28615 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-20 06:00:01] 2025-07-20 09:59:59,564 | INFO     | .. there are 39 such processes running
[2025-07-20 06:00:01] 2025-07-20 09:59:59,565 | INFO     | found 0 job(s) in 20 queues
[2025-07-20 06:00:01] 2025-07-20 09:59:59,565 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-20 06:00:01] 2025-07-20 09:59:59,565 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-20 06:00:01] 2025-07-20 09:59:59,565 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-20 06:00:01] 2025-07-20 09:59:59,565 | INFO     | [monitor] control thread has ended
[2025-07-20 06:00:01] 2025-07-20 09:59:59,736 [wrapper] ==== pilot stdout END ====
[2025-07-20 06:00:01] 2025-07-20 09:59:59,763 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-20 06:00:01] 2025-07-20 09:59:59,794 [wrapper] pilotpid: 28615
[2025-07-20 06:00:01] 2025-07-20 09:59:59,819 [wrapper] Pilot exit status: 0
[2025-07-20 06:00:01] 2025-07-20 09:59:59,992 [wrapper] pandaids: 6739113091
[2025-07-20 06:00:01] 2025-07-20 10:00:00,089 [wrapper] cleanup supervisor_pilot 2227466 28616
[2025-07-20 06:00:01] 2025-07-20 10:00:00,103 [wrapper] Test setup, not cleaning
[2025-07-20 06:00:01] 2025-07-20 10:00:00,155 [wrapper] apfmon messages muted
[2025-07-20 06:00:01] 2025-07-20 10:00:00,203 [wrapper] ==== wrapper stdout END ====
[2025-07-20 06:00:01] 2025-07-20 10:00:00,269 [wrapper] ==== wrapper stderr END ====
[2025-07-20 06:00:01]  *** Error codes and diagnostics ***
[2025-07-20 06:00:01]     "exeErrorCode": 0,
[2025-07-20 06:00:01]     "exeErrorDiag": "",
[2025-07-20 06:00:01]     "pilotErrorCode": 0,
[2025-07-20 06:00:01]     "pilotErrorDiag": "",
[2025-07-20 06:00:01]  *** Listing of results directory ***
[2025-07-20 06:00:01] total 528720
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas    530466 Jul 19 17:46 pilot3.tar.gz
[2025-07-20 06:00:01] -rwx------. 1 boincer umatlas     36292 Jul 19 17:49 runpilot2-wrapper.sh
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas      5112 Jul 19 17:49 queuedata.json
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas       100 Jul 19 17:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-20 06:00:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 19 17:50 run_atlas
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas       105 Jul 19 17:50 job.xml
[2025-07-20 06:00:01] -rw-r--r--. 2 boincer umatlas 303750213 Jul 19 17:50 EVNT.45668735._000008.pool.root.1
[2025-07-20 06:00:01] -rw-r--r--. 2 boincer umatlas    542859 Jul 19 17:50 input.tar.gz
[2025-07-20 06:00:01] -rw-r--r--. 2 boincer umatlas     15095 Jul 19 17:50 start_atlas.sh
[2025-07-20 06:00:01] drwxrwx--x. 2 boincer umatlas      4096 Jul 19 17:50 shared
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas         0 Jul 19 17:50 boinc_lockfile
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas      2508 Jul 19 17:50 pandaJob.out
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas    978446 Jul 19 17:51 agis_schedconf.cvmfs.json
[2025-07-20 06:00:01] drwx------. 4 boincer umatlas      4096 Jul 19 17:51 pilot3
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas      6703 Jul 20 05:54 init_data.xml
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas 226352262 Jul 20 05:57 HITS.45668738._000050.pool.root.1
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas       531 Jul 20 05:58 boinc_task_state.xml
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas      1044 Jul 20 05:58 memory_monitor_summary.json
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas   1593055 Jul 20 05:58 agis_ddmendpoints.agis.ALL.json
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas    662248 Jul 20 05:59 log.45668738._000050.job.log.tgz.1
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas      7814 Jul 20 05:59 heartbeat.json
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas      8192 Jul 20 05:59 boinc_mmap_file
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas        28 Jul 20 05:59 wrapper_checkpoint.txt
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas        95 Jul 20 05:59 pilot_heartbeat.json
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas       821 Jul 20 05:59 pilotlog.txt
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas   3057403 Jul 20 06:00 log.45668738._000050.job.log.1
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas       357 Jul 20 06:00 output.list
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas       620 Jul 20 06:00 runtime_log
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas   3737600 Jul 20 06:00 result.tar.gz
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas       655 Jul 20 06:00 U45MDmScUx7n9Rq4apOajLDm4fhM0noT9bVof3QYDmYYsKDmeiRyBo.diag
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas      8648 Jul 20 06:00 runtime_log.err
[2025-07-20 06:00:01] -rw-r--r--. 1 boincer umatlas     21341 Jul 20 06:00 stderr.txt
[2025-07-20 06:00:01] HITS file was successfully produced:
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas 226352262 Jul 20 05:57 shared/HITS.pool.root.1
[2025-07-20 06:00:01]  *** Contents of shared directory: ***
[2025-07-20 06:00:01] total 521884
[2025-07-20 06:00:01] -rw-r--r--. 2 boincer umatlas 303750213 Jul 19 17:50 ATLAS.root_0
[2025-07-20 06:00:01] -rw-r--r--. 2 boincer umatlas    542859 Jul 19 17:50 input.tar.gz
[2025-07-20 06:00:01] -rw-r--r--. 2 boincer umatlas     15095 Jul 19 17:50 start_atlas.sh
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas 226352262 Jul 20 05:57 HITS.pool.root.1
[2025-07-20 06:00:01] -rw-------. 1 boincer umatlas   3737600 Jul 20 06:00 result.tar.gz
06:00:02 (24533): run_atlas exited; CPU time 70021.291102
06:00:02 (24533): called boinc_finish(0)

</stderr_txt>
]]>

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