Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-14 13:44:19 (457866): Detected: vboxwrapper 26206
2025-07-14 13:44:19 (457866): Detected: BOINC client v8.0.3
2025-07-14 13:44:19 (457866): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-07-14 13:44:19 (457866): Successfully copied 'init_data.xml' to the shared directory.
2025-07-14 13:44:19 (457866): Create VM. (boinc_ad3c806118d8d69e, slot#3)
2025-07-14 13:44:19 (457866): Setting Memory Size for VM. (4300MB)
2025-07-14 13:44:19 (457866): Setting CPU Count for VM. (3)
2025-07-14 13:44:19 (457866): Setting Chipset Options for VM.
2025-07-14 13:44:19 (457866): Setting Graphics Controller Options for VM.
2025-07-14 13:44:20 (457866): Setting Boot Options for VM.
2025-07-14 13:44:20 (457866): Setting Network Configuration for NAT.
2025-07-14 13:44:20 (457866): Enabling VM Network Access.
2025-07-14 13:44:20 (457866): Disabling USB Support for VM.
2025-07-14 13:44:20 (457866): Disabling COM Port Support for VM.
2025-07-14 13:44:20 (457866): Disabling LPT Port Support for VM.
2025-07-14 13:44:20 (457866): Disabling Audio Support for VM.
2025-07-14 13:44:20 (457866): Disabling Clipboard Support for VM.
2025-07-14 13:44:20 (457866): Disabling Drag and Drop Support for VM.
2025-07-14 13:44:20 (457866): Adding storage controller(s) to VM.
2025-07-14 13:44:20 (457866): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-14 13:44:26 (457866): Disk UUID conflicts with an already existing disk.
Will set a new UUID for 'ATLAS_vbox_3.01_image.vdi'.
The project admin should be informed to do this server side running:
vboxmanage clonemedium <inputfile> <outputfile>

2025-07-14 13:44:26 (457866): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-14 13:44:26 (457866): forwarding host port 43605 to guest port 80
2025-07-14 13:44:26 (457866): Enabling remote desktop for VM.
2025-07-14 13:44:26 (457866): Required extension pack not installed, remote desktop not enabled.
2025-07-14 13:44:26 (457866): Enabling shared directory for VM.
2025-07-14 13:44:27 (457866): Starting VM using VBoxManage interface. (boinc_ad3c806118d8d69e, slot#3)
2025-07-14 13:44:28 (457866): Successfully started VM. (PID = '458462')
2025-07-14 13:44:28 (457866): Reporting VM Process ID to BOINC.
2025-07-14 13:44:28 (457866): Guest Log: BIOS: VirtualBox 7.1.10
2025-07-14 13:44:28 (457866): Guest Log: CPUID EDX: 0x178bfbff
2025-07-14 13:44:28 (457866): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-14 13:44:28 (457866): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-14 13:44:28 (457866): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-14 13:44:28 (457866): Detected: Web Application Enabled (http://localhost:43605)
2025-07-14 13:44:28 (457866): Preference change detected
2025-07-14 13:44:28 (457866): Setting CPU throttle for VM. (100%)
2025-07-14 13:44:28 (457866): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-14 13:44:30 (457866): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-14 13:44:30 (457866): Guest Log: BIOS: Booting from Hard Disk...
2025-07-14 13:44:33 (457866): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-14 13:44:33 (457866): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-14 13:44:33 (457866): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-14 13:44:39 (457866): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-14 13:44:39 (457866): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-14 13:44:45 (457866): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-14 13:44:45 (457866): Guest Log: 00:00:00.000144 main     Log opened 2025-07-14T11:44:43.480988000Z
2025-07-14 13:44:45 (457866): Guest Log: 00:00:00.000214 main     OS Product: Linux
2025-07-14 13:44:45 (457866): Guest Log: 00:00:00.000235 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-14 13:44:45 (457866): Guest Log: 00:00:00.000246 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-14 13:44:45 (457866): Guest Log: 00:00:00.000257 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-14 13:44:45 (457866): Guest Log: 00:00:00.000258 main     Process ID: 1287
2025-07-14 13:44:45 (457866): Guest Log: 00:00:00.000258 main     Package type: LINUX_64BITS_GENERIC
2025-07-14 13:44:45 (457866): Guest Log: 00:00:00.000859 main     5.2.32 r132073 started. Verbose level = 0
2025-07-14 13:44:45 (457866): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-14 13:44:45 (457866): Guest Log: [INFO] Mounting shared directory
2025-07-14 13:44:45 (457866): Guest Log: [INFO] Checking for init_data.xml
2025-07-14 13:44:47 (457866): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-14 13:44:47 (457866): Guest Log: [INFO] Detected branch: prod
2025-07-14 13:44:48 (457866): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-14 13:44:48 (457866): Guest Log: Copying input files
2025-07-14 13:44:49 (457866): Guest Log: Copied input files into RunAtlas.
2025-07-14 13:44:49 (457866): Guest Log: Detected user-configured HTTP proxy at http://192.168.101.210:3128 - will set in /etc/cvmfs/default.local
2025-07-14 13:44:58 (457866): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-14 13:44:59 (457866): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-14 13:44:59 (457866): Guest Log: 2.6.3.0 1562 0 29436 148315 4 1 3117618 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.210:3128 1
2025-07-14 13:44:59 (457866): Guest Log: copied the webapp to /var/www
2025-07-14 13:44:59 (457866): Guest Log: ATHENA_PROC_NUMBER=3
2025-07-14 13:44:59 (457866): Guest Log: ATHENA_CORE_NUMBER=3
2025-07-14 13:44:59 (457866): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-14 13:44:59 (457866): Guest Log:  *** Starting ATLAS job. (PandaID=6727212484 taskID=45436060) ***
2025-07-14 15:23:28 (457866): Status Report: Elapsed Time: '6000.000000'
2025-07-14 15:23:28 (457866): Status Report: CPU Time: '16486.010000'
2025-07-14 17:02:29 (457866): Status Report: Elapsed Time: '12000.000000'
2025-07-14 17:02:29 (457866): Status Report: CPU Time: '33707.230000'
2025-07-14 18:41:29 (457866): Status Report: Elapsed Time: '18000.000000'
2025-07-14 18:41:29 (457866): Status Report: CPU Time: '51142.480000'
2025-07-14 20:20:29 (457866): Status Report: Elapsed Time: '24000.000000'
2025-07-14 20:20:29 (457866): Status Report: CPU Time: '68573.440000'
2025-07-14 21:59:30 (457866): Status Report: Elapsed Time: '30000.000000'
2025-07-14 21:59:30 (457866): Status Report: CPU Time: '86026.970000'
2025-07-14 23:21:32 (457866): Guest Log:  *** Job finished ***
2025-07-14 23:21:32 (457866): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:02,226 | INFO     | all workflow threads have been joined
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:02,227 | INFO     | end of generic workflow (traces error code: 0)
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:02,227 | INFO     | traces error code: 0
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:02,227 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,278 | INFO     | PID=5864 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,278 | INFO     | found 0 job(s) in 20 queues
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,279 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,279 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,279 | INFO     | [monitor] control thread has ended
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,361 [wrapper] ==== pilot stdout END ====
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,367 [wrapper] ==== wrapper stdout RESUME ====
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,372 [wrapper] pilotpid: 5864
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,376 [wrapper] Pilot exit status: 0
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,459 [wrapper] pandaids: 6727212484
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,489 [wrapper] cleanup supervisor_pilot 16068 5865
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,498 [wrapper] Test setup, not cleaning
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,503 [wrapper] apfmon messages muted
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,508 [wrapper] ==== wrapper stdout END ====
2025-07-14 23:21:32 (457866): Guest Log: 2025-07-14 21:21:16,513 [wrapper] ==== wrapper stderr END ====
2025-07-14 23:21:32 (457866): Guest Log:  *** Error codes and diagnostics ***
2025-07-14 23:21:32 (457866): Guest Log:     "exeErrorCode": 0,
2025-07-14 23:21:32 (457866): Guest Log:     "exeErrorDiag": "",
2025-07-14 23:21:32 (457866): Guest Log:     "pilotErrorCode": 0,
2025-07-14 23:21:32 (457866): Guest Log:     "pilotErrorDiag": "",
2025-07-14 23:21:32 (457866): Guest Log:  *** Listing of results directory ***
2025-07-14 23:21:32 (457866): Guest Log: total 213424
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 10 15:40 pilot3.tar.gz
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 10 15:44 queuedata.json
2025-07-14 23:21:32 (457866): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 10 15:45 runpilot2-wrapper.sh
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 atlas atlas     15095 Jul 14 11:44 start_atlas.sh
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 atlas atlas    542910 Jul 14 11:44 input.tar.gz
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 atlas atlas      6826 Jul 14 11:44 init_data.xml
2025-07-14 23:21:32 (457866): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 14 11:44 EVNT.45436057._000003.pool.root.1 -> /data/./ATLAS.root_0
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 atlas atlas      2611 Jul 14 11:44 pandaJob.out
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas    976335 Jul 14 11:45 agis_schedconf.cvmfs.json
2025-07-14 23:21:32 (457866): Guest Log: drwx------. 4 atlas atlas      4096 Jul 14 11:45 pilot3
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas 207901258 Jul 14 21:20 HITS.45436060._000053.pool.root.1
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas        95 Jul 14 21:20 pilot_heartbeat.json
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas      1021 Jul 14 21:20 memory_monitor_summary.json
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas   1588641 Jul 14 21:20 agis_ddmendpoints.agis.ALL.json
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas    473223 Jul 14 21:20 log.45436060._000053.job.log.tgz.1
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas      7738 Jul 14 21:20 heartbeat.json
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas       744 Jul 14 21:21 pilotlog.txt
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas   2951093 Jul 14 21:21 log.45436060._000053.job.log.1
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas       357 Jul 14 21:21 output.list
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 14 21:21 runtime_log
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas   3440640 Jul 14 21:21 result.tar.gz
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas       658 Jul 14 21:21 SMuKDmgd8t7n9Rq4apOajLDm4fhM0noT9bVof3QYDmwWsKDmq6hszm.diag
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 atlas atlas      8581 Jul 14 21:21 runtime_log.err
2025-07-14 23:21:32 (457866): Guest Log: Looking for outputfile HITS.45436060._000053.pool.root.1
2025-07-14 23:21:32 (457866): Guest Log: HITS file was successfully produced
2025-07-14 23:21:32 (457866): Guest Log: -rw-------. 1 atlas atlas 207901258 Jul 14 21:20 /home/atlas/RunAtlas/HITS.45436060._000053.pool.root.1
2025-07-14 23:21:32 (457866): Guest Log: Successfully finished the ATLAS job!
2025-07-14 23:21:32 (457866): Guest Log: Copying the results back to the shared directory!
2025-07-14 23:21:32 (457866): Guest Log:  *** Contents of shared directory: ***
2025-07-14 23:21:32 (457866): Guest Log: total 263540
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 root root 265847263 Jul 14 11:44 ATLAS.root_0
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 root root      6826 Jul 14 11:44 init_data.xml
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 root root    542910 Jul 14 11:44 input.tar.gz
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 root root   3440640 Jul 14  2025 result.tar.gz
2025-07-14 23:21:32 (457866): Guest Log: -rw-r--r--. 1 root root     15095 Jul 14 11:44 start_atlas.sh
2025-07-14 23:21:32 (457866): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-14 23:21:32 (457866): VM Completion File Detected.
2025-07-14 23:21:32 (457866): Powering off VM.
2025-07-14 23:21:33 (457866): Successfully stopped VM.
2025-07-14 23:21:33 (457866): Deregistering VM. (boinc_ad3c806118d8d69e, slot#3)
2025-07-14 23:21:33 (457866): Removing network bandwidth throttle group from VM.
2025-07-14 23:21:33 (457866): Removing VM from VirtualBox.
23:21:38 (457866): called boinc_finish(0)

</stderr_txt>
]]>

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