Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:26:40 (124535): wrapper (7.7.26015): starting
12:26:40 (124535): wrapper: running run_atlas (--nthreads 8)
[2025-07-13 12:26:40] Arguments: --nthreads 8
[2025-07-13 12:26:40] Threads: 8
[2025-07-13 12:26:40] Checking for CVMFS
[2025-07-13 12:26:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-13 12:26:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-13 12:26:41] Running cvmfs_config stat atlas.cern.ch
[2025-07-13 12:26:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-13 12:26:41] 2.11.2.0 22099 68766 268348 148286 3 3 18213458 18432000 2 130560 0 159712257 99.294 250834387 49874 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-13 12:26:41] CVMFS is ok
[2025-07-13 12:26:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-13 12:26:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-13 12:26:41] Further information can be found at the LHC@home message board.
[2025-07-13 12:26:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-13 12:26:41] Checking for apptainer binary...
[2025-07-13 12:26:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-13 12:26:41] Running /usr/bin/apptainer --version
[2025-07-13 12:26:41] apptainer version 1.3.2-1.el7
[2025-07-13 12:26:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-13 12:26:42] c-210-33-1.aglt2.org
[2025-07-13 12:26:42] apptainer works
[2025-07-13 12:26:42] Set ATHENA_PROC_NUMBER=8
[2025-07-13 12:26:42] Set ATHENA_CORE_NUMBER=8
[2025-07-13 12:26:42] Starting ATLAS job with PandaID=6720617977
[2025-07-13 12:26:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-13 13:29:55]  *** The last 200 lines of the pilot log: ***
[2025-07-13 13:29:55]  is_tar=False
[2025-07-13 13:29:55]  lfn=log.45482040._005366.job.log.tgz.1
[2025-07-13 13:29:55]  mtime=0
[2025-07-13 13:29:55]  protocol_id=None
[2025-07-13 13:29:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-13 13:29:55]  replicas=None
[2025-07-13 13:29:55]  scope=mc23_13p6TeV
[2025-07-13 13:29:55]  status=None
[2025-07-13 13:29:55]  status_code=0
[2025-07-13 13:29:55]  storage_token=
[2025-07-13 13:29:55]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6720617977/log.45482040._005366.job.log.tgz.1
[2025-07-13 13:29:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/f8/log.45482040._005366.job.log.tgz.1
[2025-07-13 13:29:55]  workdir=None
[2025-07-13 13:29:55] ]
[2025-07-13 13:29:55] 2025-07-13 17:29:19,059 | INFO     | transferring file log.45482040._005366.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6720617977/log.45482040._005366.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-13 13:29:55] 2025-07-13 17:29:19,059 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6720617977/log.45482040._005366.job.log.tgz.1 /tmp/boinchome/slots/1/log.45482040._005366.job
[2025-07-13 13:29:55] 2025-07-13 17:29:19,083 | INFO     | adding to output.list: log.45482040._005366.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/f8/log.45482040._005366.job.log.tg
[2025-07-13 13:29:55] 2025-07-13 17:29:19,084 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-13 13:29:55] 2025-07-13 17:29:19,084 | INFO     | summary of transferred files:
[2025-07-13 13:29:55] 2025-07-13 17:29:19,084 | INFO     |  -- lfn=log.45482040._005366.job.log.tgz.1, status_code=0, status=transferred
[2025-07-13 13:29:55] 2025-07-13 17:29:19,084 | INFO     | stage-out finished correctly
[2025-07-13 13:29:55] 2025-07-13 17:29:19,976 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-13 13:29:55] 2025-07-13 17:29:20,047 | INFO     | job 6720617977 has state=finished
[2025-07-13 13:29:55] 2025-07-13 17:29:20,047 | INFO     | preparing for final server update for job 6720617977 in state='finished'
[2025-07-13 13:29:55] 2025-07-13 17:29:20,048 | INFO     | this job has now completed (state=finished)
[2025-07-13 13:29:55] 2025-07-13 17:29:20,048 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-13 13:29:55] 2025-07-13 17:29:20,048 | INFO     | log transfer has been attempted: DONE
[2025-07-13 13:29:55] 2025-07-13 17:29:20,048 | INFO     | job 6720617977 has finished - writing final server update
[2025-07-13 13:29:55] 2025-07-13 17:29:20,049 | INFO     | total number of processed events: 400 (read)
[2025-07-13 13:29:55] 2025-07-13 17:29:20,049 | INFO     | executing command: lscpu
[2025-07-13 13:29:55] 2025-07-13 17:29:20,118 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-13 13:29:55] 2025-07-13 17:29:20,972 | INFO     | monitor loop #285: job 0:6720617977 is in state 'finished'
[2025-07-13 13:29:55] 2025-07-13 17:29:20,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-13 13:29:55] 2025-07-13 17:29:23,476 | INFO     | monitor loop #286: job 0:6720617977 is in state 'finished'
[2025-07-13 13:29:55] 2025-07-13 17:29:23,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-13 13:29:55] 2025-07-13 17:29:23,490 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-13 13:29:55] 2025-07-13 17:29:23,495 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 1965.2537321428574
[2025-07-13 13:29:55] 2025-07-13 17:29:23,500 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6720617977/memory_monitor_summary.json (trf name=prmon)
[2025-07-13 13:29:55] 2025-07-13 17:29:23,501 | INFO     | extracted standard info from prmon json
[2025-07-13 13:29:55] 2025-07-13 17:29:23,501 | INFO     | extracted standard memory fields from prmon json
[2025-07-13 13:29:55] 2025-07-13 17:29:23,501 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-13 13:29:55] 2025-07-13 17:29:23,501 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-13 13:29:55] 2025-07-13 17:29:23,501 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-13 13:29:55] 2025-07-13 17:29:23,502 | INFO     | fitting pss+swap vs Time
[2025-07-13 13:29:55] 2025-07-13 17:29:23,502 | INFO     | sum of square deviations: 48810217.5
[2025-07-13 13:29:55] 2025-07-13 17:29:23,502 | INFO     | sum of deviations: -1219319789.0
[2025-07-13 13:29:55] 2025-07-13 17:29:23,502 | INFO     | mean x: 1752425962.5
[2025-07-13 13:29:55] 2025-07-13 17:29:23,502 | INFO     | mean y: 2672431.3333333335
[2025-07-13 13:29:55] 2025-07-13 17:29:23,502 | INFO     | -- intersect: 43779729045.22001
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | intersect: 43779729045.22001
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | chi2: 0.014898340694118117
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | -- intersect: 43779729045.22001
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | current memory leak: -24.98 B/s (using 54 data points, chi2=0.01)
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | could have reported an average CPU frequency of 2253 MHz (6 samples)
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | ..............................
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | . Timing measurements:
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | . get job = 0 s
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | . initial setup = 2 s
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | . payload setup = 7 s
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | . stage-in = 0 s
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | . payload execution = 3716 s
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | . stage-out = 0 s
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | . log creation = 0 s
[2025-07-13 13:29:55] 2025-07-13 17:29:23,503 | INFO     | ..............................
[2025-07-13 13:29:55] 2025-07-13 17:29:23,547 | INFO     | 
[2025-07-13 13:29:55] 2025-07-13 17:29:23,548 | INFO     | job summary report
[2025-07-13 13:29:55] 2025-07-13 17:29:23,548 | INFO     | --------------------------------------------------
[2025-07-13 13:29:55] 2025-07-13 17:29:23,548 | INFO     | PanDA job id: 6720617977
[2025-07-13 13:29:55] 2025-07-13 17:29:23,548 | INFO     | task id: 45482040
[2025-07-13 13:29:55] 2025-07-13 17:29:23,548 | INFO     | errors: (none)
[2025-07-13 13:29:55] 2025-07-13 17:29:23,548 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-13 13:29:55] 2025-07-13 17:29:23,548 | INFO     | pilot state: finished 
[2025-07-13 13:29:55] 2025-07-13 17:29:23,548 | INFO     | transexitcode: 0
[2025-07-13 13:29:55] 2025-07-13 17:29:23,548 | INFO     | exeerrorcode: 0
[2025-07-13 13:29:55] 2025-07-13 17:29:23,549 | INFO     | exeerrordiag: 
[2025-07-13 13:29:55] 2025-07-13 17:29:23,549 | INFO     | exitcode: 0
[2025-07-13 13:29:55] 2025-07-13 17:29:23,549 | INFO     | exitmsg: OK
[2025-07-13 13:29:55] 2025-07-13 17:29:23,549 | INFO     | cpuconsumptiontime: 27987 s
[2025-07-13 13:29:55] 2025-07-13 17:29:23,549 | INFO     | nevents: 400
[2025-07-13 13:29:55] 2025-07-13 17:29:23,549 | INFO     | neventsw: 0
[2025-07-13 13:29:55] 2025-07-13 17:29:23,549 | INFO     | pid: 144704
[2025-07-13 13:29:55] 2025-07-13 17:29:23,549 | INFO     | pgrp: 144704
[2025-07-13 13:29:55] 2025-07-13 17:29:23,549 | INFO     | corecount: 8
[2025-07-13 13:29:55] 2025-07-13 17:29:23,550 | INFO     | event service: False
[2025-07-13 13:29:55] 2025-07-13 17:29:23,550 | INFO     | sizes: {0: 2393274, 1: 2393529, 5: 2393791, 12: 2393847, 3727: 2419701, 3728: 2419700, 3729: 2428882, 3730: 2428938, 3733: 2429132}
[2025-07-13 13:29:55] 2025-07-13 17:29:23,550 | INFO     | --------------------------------------------------
[2025-07-13 13:29:55] 2025-07-13 17:29:23,550 | INFO     | 
[2025-07-13 13:29:55] 2025-07-13 17:29:23,550 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-13 13:29:55] 2025-07-13 17:29:23,577 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,577 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,577 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,579 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-13 13:29:55] 2025-07-13 17:29:23,579 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,579 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-13 13:29:55] 2025-07-13 17:29:23,579 | INFO     | job 6720617977 has completed (purged errors)
[2025-07-13 13:29:55] 2025-07-13 17:29:23,579 | INFO     | overall cleanup function is called
[2025-07-13 13:29:55] 2025-07-13 17:29:24,589 | INFO     | --- collectZombieJob: --- 10, [144704]
[2025-07-13 13:29:55] 2025-07-13 17:29:24,589 | INFO     | zombie collector waiting for pid 144704
[2025-07-13 13:29:55] 2025-07-13 17:29:24,589 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-13 13:29:55] 2025-07-13 17:29:24,589 | INFO     | collected zombie processes
[2025-07-13 13:29:55] 2025-07-13 17:29:24,589 | INFO     | will attempt to kill all subprocesses of pid=144704
[2025-07-13 13:29:55] 2025-07-13 17:29:24,750 | INFO     | process IDs to be killed: [144704] (in reverse order)
[2025-07-13 13:29:55] 2025-07-13 17:29:24,837 | WARNING  | found no corresponding commands to process id(s)
[2025-07-13 13:29:55] 2025-07-13 17:29:24,838 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-13 13:29:55] 2025-07-13 17:29:24,845 | INFO     | did not find any defunct processes belonging to 144704
[2025-07-13 13:29:55] 2025-07-13 17:29:24,851 | INFO     | did not find any defunct processes belonging to 144704
[2025-07-13 13:29:55] 2025-07-13 17:29:24,852 | INFO     | ready for new job
[2025-07-13 13:29:55] 2025-07-13 17:29:24,852 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-13 13:29:55] 2025-07-13 17:29:24,854 | INFO     | ***************************************
[2025-07-13 13:29:55] 2025-07-13 17:29:24,854 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-13 13:29:55] 2025-07-13 17:29:24,854 | INFO     | ***************************************
[2025-07-13 13:29:55] 2025-07-13 17:29:24,854 | INFO     | 
[2025-07-13 13:29:55] 2025-07-13 17:29:24,859 | INFO     | architecture information:
[2025-07-13 13:29:55] 2025-07-13 17:29:24,860 | INFO     | executing command: cat /etc/os-release
[2025-07-13 13:29:55] 2025-07-13 17:29:24,881 | INFO     | cat /etc/os-release:
[2025-07-13 13:29:55] NAME="CentOS Linux"
[2025-07-13 13:29:55] VERSION="7 (Core)"
[2025-07-13 13:29:55] ID="centos"
[2025-07-13 13:29:55] ID_LIKE="rhel fedora"
[2025-07-13 13:29:55] VERSION_ID="7"
[2025-07-13 13:29:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-13 13:29:55] ANSI_COLOR="0;31"
[2025-07-13 13:29:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-13 13:29:55] HOME_URL="https://www.centos.org/"
[2025-07-13 13:29:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-13 13:29:55] 
[2025-07-13 13:29:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-13 13:29:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-13 13:29:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-13 13:29:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-13 13:29:55] 
[2025-07-13 13:29:55] 2025-07-13 17:29:24,881 | INFO     | ***************************************
[2025-07-13 13:29:55] 2025-07-13 17:29:25,386 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-13 13:29:55] 2025-07-13 17:29:25,408 | INFO     | sufficient remaining disk space (56479449088 B)
[2025-07-13 13:29:55] 2025-07-13 17:29:25,408 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-13 13:29:55] 2025-07-13 17:29:25,408 | INFO     | current server update state: UPDATING_FINAL
[2025-07-13 13:29:55] 2025-07-13 17:29:25,409 | INFO     | update_server=False
[2025-07-13 13:29:55] 2025-07-13 17:29:25,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-13 13:29:55] 2025-07-13 17:29:25,409 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-13 13:29:55] 2025-07-13 17:29:25,409 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-13 13:29:55] 2025-07-13 17:29:25,409 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-13 13:29:55] 2025-07-13 17:29:25,410 | INFO     | aborting loop
[2025-07-13 13:29:55] 2025-07-13 17:29:25,812 | INFO     | all payload control threads have been joined
[2025-07-13 13:29:55] 2025-07-13 17:29:26,052 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-13 13:29:55] 2025-07-13 17:29:26,416 | INFO     | [job] job monitor thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:26,416 | INFO     | [job] queue monitor thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:26,417 | INFO     | [job] retrieve thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:26,418 | INFO     | all data control threads have been joined
[2025-07-13 13:29:55] 2025-07-13 17:29:26,571 | INFO     | [job] create_data_payload thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:26,597 | INFO     | [payload] validate_post thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:26,694 | INFO     | [job] validate thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:26,818 | INFO     | [payload] control thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:26,966 | INFO     | all job control threads have been joined
[2025-07-13 13:29:55] 2025-07-13 17:29:27,088 | INFO     | [payload] validate_pre thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:27,416 | INFO     | [data] copytool_out thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:27,424 | INFO     | [data] control thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:27,529 | INFO     | [payload] execute_payloads thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:27,529 | INFO     | [data] copytool_in thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:27,755 | INFO     | [payload] failed_post thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:27,972 | INFO     | [job] control thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:30,058 | INFO     | [data] queue_monitor thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:36,305 | INFO     | job.realtimelogging is not enabled
[2025-07-13 13:29:55] 2025-07-13 17:29:37,312 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-13 13:29:55] 2025-07-13 17:29:38,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140367620831040)>', '<ExcThread(monitor, started 140367402096384)>']
[2025-07-13 13:29:55] 2025-07-13 17:29:43,581 | INFO     | all workflow threads have been joined
[2025-07-13 13:29:55] 2025-07-13 17:29:43,581 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-13 13:29:55] 2025-07-13 17:29:43,582 | INFO     | traces error code: 0
[2025-07-13 13:29:55] 2025-07-13 17:29:43,582 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-13 13:29:55] 2025-07-13 17:29:55,495 | INFO     | PID=131820 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-13 13:29:55] 2025-07-13 17:29:55,495 | INFO     | .. there are 2 such processes running
[2025-07-13 13:29:55] 2025-07-13 17:29:55,495 | INFO     | found 0 job(s) in 20 queues
[2025-07-13 13:29:55] 2025-07-13 17:29:55,496 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-13 13:29:55] 2025-07-13 17:29:55,496 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-13 13:29:55] 2025-07-13 17:29:55,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-13 13:29:55] 2025-07-13 17:29:55,496 | CRITICAL | thread 'MainThread' is not alive
[2025-07-13 13:29:55] 2025-07-13 17:29:55,496 | INFO     | [monitor] control thread has ended
[2025-07-13 13:29:55] 2025-07-13 17:29:55,600 [wrapper] ==== pilot stdout END ====
[2025-07-13 13:29:55] 2025-07-13 17:29:55,603 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-13 13:29:55] 2025-07-13 17:29:55,608 [wrapper] pilotpid: 131820
[2025-07-13 13:29:55] 2025-07-13 17:29:55,611 [wrapper] Pilot exit status: 0
[2025-07-13 13:29:55] 2025-07-13 17:29:55,624 [wrapper] pandaids: 6720617977
[2025-07-13 13:29:55] 2025-07-13 17:29:55,687 [wrapper] cleanup supervisor_pilot 182412 131821
[2025-07-13 13:29:55] 2025-07-13 17:29:55,691 [wrapper] Test setup, not cleaning
[2025-07-13 13:29:55] 2025-07-13 17:29:55,695 [wrapper] apfmon messages muted
[2025-07-13 13:29:55] 2025-07-13 17:29:55,699 [wrapper] ==== wrapper stdout END ====
[2025-07-13 13:29:55] 2025-07-13 17:29:55,703 [wrapper] ==== wrapper stderr END ====
[2025-07-13 13:29:55]  *** Error codes and diagnostics ***
[2025-07-13 13:29:55]     "exeErrorCode": 0,
[2025-07-13 13:29:55]     "exeErrorDiag": "",
[2025-07-13 13:29:55]     "pilotErrorCode": 0,
[2025-07-13 13:29:55]     "pilotErrorDiag": "",
[2025-07-13 13:29:55]  *** Listing of results directory ***
[2025-07-13 13:29:55] total 557156
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas    530466 Jul  5 05:13 pilot3.tar.gz
[2025-07-13 13:29:55] -rwx------ 1 boincer umatlas     36292 Jul  5 05:22 runpilot2-wrapper.sh
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas      5112 Jul  5 05:22 queuedata.json
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas       100 Jul 13 12:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-13 13:29:55] -rwxr-xr-x 1 boincer umatlas      7986 Jul 13 12:26 run_atlas
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas       105 Jul 13 12:26 job.xml
[2025-07-13 13:29:55] -rw-r--r-- 2 boincer umatlas 311919989 Jul 13 12:26 EVNT.45482038._000215.pool.root.1
[2025-07-13 13:29:55] -rw-r--r-- 2 boincer umatlas     15095 Jul 13 12:26 start_atlas.sh
[2025-07-13 13:29:55] drwxrwx--x 2 boincer umatlas      4096 Jul 13 12:26 shared
[2025-07-13 13:29:55] -rw-r--r-- 2 boincer umatlas    542881 Jul 13 12:26 input.tar.gz
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas         0 Jul 13 12:26 boinc_lockfile
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas      2544 Jul 13 12:26 pandaJob.out
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas    976219 Jul 13 12:26 agis_schedconf.cvmfs.json
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas   1588641 Jul 13 12:26 agis_ddmendpoints.agis.ALL.json
[2025-07-13 13:29:55] drwx------ 4 boincer umatlas      4096 Jul 13 12:26 pilot3
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas      6354 Jul 13 13:22 init_data.xml
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas 253359909 Jul 13 13:28 HITS.45482040._005366.pool.root.1
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas       529 Jul 13 13:29 boinc_task_state.xml
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas      1037 Jul 13 13:29 memory_monitor_summary.json
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas    299612 Jul 13 13:29 log.45482040._005366.job.log.tgz.1
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas      7826 Jul 13 13:29 heartbeat.json
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas        27 Jul 13 13:29 wrapper_checkpoint.txt
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas      8192 Jul 13 13:29 boinc_mmap_file
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas       891 Jul 13 13:29 pilotlog.txt
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas        95 Jul 13 13:29 pilot_heartbeat.json
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas    385204 Jul 13 13:29 log.45482040._005366.job.log.1
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas       357 Jul 13 13:29 output.list
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas       620 Jul 13 13:29 runtime_log
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas    706560 Jul 13 13:29 result.tar.gz
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas      8670 Jul 13 13:29 runtime_log.err
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas       658 Jul 13 13:29 2J1MDm2GEs7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2OALDmu7SLPo.diag
[2025-07-13 13:29:55] -rw-r--r-- 1 boincer umatlas     21533 Jul 13 13:29 stderr.txt
[2025-07-13 13:29:55] HITS file was successfully produced:
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas 253359909 Jul 13 13:28 shared/HITS.pool.root.1
[2025-07-13 13:29:55]  *** Contents of shared directory: ***
[2025-07-13 13:29:55] total 553284
[2025-07-13 13:29:55] -rw-r--r-- 2 boincer umatlas 311919989 Jul 13 12:26 ATLAS.root_0
[2025-07-13 13:29:55] -rw-r--r-- 2 boincer umatlas     15095 Jul 13 12:26 start_atlas.sh
[2025-07-13 13:29:55] -rw-r--r-- 2 boincer umatlas    542881 Jul 13 12:26 input.tar.gz
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas 253359909 Jul 13 13:28 HITS.pool.root.1
[2025-07-13 13:29:55] -rw------- 1 boincer umatlas    706560 Jul 13 13:29 result.tar.gz
13:29:57 (124535): run_atlas exited; CPU time 28004.841230
13:29:57 (124535): called boinc_finish(0)

</stderr_txt>
]]>

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