Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-13 14:32:31 (477595): Detected: vboxwrapper 26206
2025-07-13 14:32:31 (477595): Detected: BOINC client v8.2.4
2025-07-13 14:32:32 (477595): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-07-13 14:32:32 (477595): Successfully copied 'init_data.xml' to the shared directory.
2025-07-13 14:32:33 (477595): Create VM. (boinc_068452d468c6af14, slot#4)
2025-07-13 14:32:33 (477595): Setting Memory Size for VM. (4096MB)
2025-07-13 14:32:33 (477595): Setting CPU Count for VM. (1)
2025-07-13 14:32:33 (477595): Setting Chipset Options for VM.
2025-07-13 14:32:34 (477595): Setting Graphics Controller Options for VM.
2025-07-13 14:32:34 (477595): Setting Boot Options for VM.
2025-07-13 14:32:34 (477595): Setting Network Configuration for NAT.
2025-07-13 14:32:34 (477595): Enabling VM Network Access.
2025-07-13 14:32:35 (477595): Disabling USB Support for VM.
2025-07-13 14:32:35 (477595): Disabling COM Port Support for VM.
2025-07-13 14:32:35 (477595): Disabling LPT Port Support for VM.
2025-07-13 14:32:35 (477595): Disabling Audio Support for VM.
2025-07-13 14:32:36 (477595): Disabling Clipboard Support for VM.
2025-07-13 14:32:36 (477595): Disabling Drag and Drop Support for VM.
2025-07-13 14:32:36 (477595): Adding storage controller(s) to VM.
2025-07-13 14:32:36 (477595): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-13 14:32:37 (477595): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-13 14:32:37 (477595): forwarding host port 57209 to guest port 80
2025-07-13 14:32:37 (477595): Enabling remote desktop for VM.
2025-07-13 14:32:38 (477595): Enabling shared directory for VM.
2025-07-13 14:32:38 (477595): Starting VM using VBoxManage interface. (boinc_068452d468c6af14, slot#4)
2025-07-13 14:32:40 (477595): Successfully started VM. (PID = '477988')
2025-07-13 14:32:40 (477595): Reporting VM Process ID to BOINC.
2025-07-13 14:32:40 (477595): Guest Log: BIOS: VirtualBox 7.0.20
2025-07-13 14:32:40 (477595): Guest Log: CPUID EDX: 0x178bfbff
2025-07-13 14:32:40 (477595): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-13 14:32:40 (477595): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-13 14:32:40 (477595): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-13 14:32:40 (477595): Detected: Web Application Enabled (http://localhost:57209)
2025-07-13 14:32:40 (477595): Detected: Remote Desktop Enabled (localhost:39377)
2025-07-13 14:32:40 (477595): Preference change detected
2025-07-13 14:32:40 (477595): Setting CPU throttle for VM. (100%)
2025-07-13 14:32:40 (477595): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-13 14:32:42 (477595): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-13 14:32:42 (477595): Guest Log: BIOS: Booting from Hard Disk...
2025-07-13 14:32:45 (477595): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-13 14:32:45 (477595): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-13 14:32:45 (477595): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-13 14:32:50 (477595): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-13 14:32:50 (477595): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-13 14:33:02 (477595): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-13 14:33:02 (477595): Guest Log: 00:00:00.000255 main     Log opened 2025-07-13T12:33:00.671341000Z
2025-07-13 14:33:02 (477595): Guest Log: 00:00:00.000417 main     OS Product: Linux
2025-07-13 14:33:02 (477595): Guest Log: 00:00:00.000466 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-13 14:33:02 (477595): Guest Log: 00:00:00.000490 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-13 14:33:02 (477595): Guest Log: 00:00:00.000516 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-13 14:33:02 (477595): Guest Log: 00:00:00.000517 main     Process ID: 1236
2025-07-13 14:33:02 (477595): Guest Log: 00:00:00.000517 main     Package type: LINUX_64BITS_GENERIC
2025-07-13 14:33:03 (477595): Guest Log: 00:00:00.003177 main     5.2.32 r132073 started. Verbose level = 0
2025-07-13 14:33:03 (477595): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-13 14:33:03 (477595): Guest Log: [INFO] Mounting shared directory
2025-07-13 14:33:03 (477595): Guest Log: [INFO] Checking for init_data.xml
2025-07-13 14:33:06 (477595): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-13 14:33:06 (477595): Guest Log: [INFO] Detected branch: prod
2025-07-13 14:33:06 (477595): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-13 14:33:06 (477595): Guest Log: Copying input files
2025-07-13 14:33:07 (477595): Guest Log: Copied input files into RunAtlas.
2025-07-13 14:33:07 (477595): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-07-13 14:33:17 (477595): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-13 14:33:17 (477595): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-13 14:33:17 (477595): Guest Log: 2.6.3.0 1521 0 31548 148278 4 1 3117618 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-07-13 14:33:18 (477595): Guest Log: copied the webapp to /var/www
2025-07-13 14:33:18 (477595): Guest Log: core_number=1
2025-07-13 14:33:18 (477595): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-13 14:33:18 (477595): Guest Log:  *** Starting ATLAS job. (PandaID=6720592855 taskID=45482062) ***
2025-07-13 16:11:40 (477595): Status Report: Elapsed Time: '6000.000000'
2025-07-13 16:11:40 (477595): Status Report: CPU Time: '5901.310000'
2025-07-13 17:50:40 (477595): Status Report: Elapsed Time: '12000.000000'
2025-07-13 17:50:40 (477595): Status Report: CPU Time: '11847.660000'
2025-07-13 19:29:41 (477595): Status Report: Elapsed Time: '18000.000000'
2025-07-13 19:29:41 (477595): Status Report: CPU Time: '17793.870000'
2025-07-13 21:08:41 (477595): Status Report: Elapsed Time: '24000.000000'
2025-07-13 21:08:41 (477595): Status Report: CPU Time: '23740.200000'
2025-07-13 22:47:42 (477595): Status Report: Elapsed Time: '30000.000000'
2025-07-13 22:47:42 (477595): Status Report: CPU Time: '29686.270000'
2025-07-14 00:26:42 (477595): Status Report: Elapsed Time: '36000.000000'
2025-07-14 00:26:42 (477595): Status Report: CPU Time: '35632.570000'
2025-07-14 02:05:42 (477595): Status Report: Elapsed Time: '42000.000000'
2025-07-14 02:05:42 (477595): Status Report: CPU Time: '41578.060000'
2025-07-14 03:44:43 (477595): Status Report: Elapsed Time: '48000.000000'
2025-07-14 03:44:43 (477595): Status Report: CPU Time: '47524.070000'
2025-07-14 05:23:43 (477595): Status Report: Elapsed Time: '54000.000000'
2025-07-14 05:23:43 (477595): Status Report: CPU Time: '53469.240000'
2025-07-14 07:02:43 (477595): Status Report: Elapsed Time: '60000.000000'
2025-07-14 07:02:43 (477595): Status Report: CPU Time: '59414.050000'
2025-07-14 08:41:44 (477595): Status Report: Elapsed Time: '66000.000000'
2025-07-14 08:41:44 (477595): Status Report: CPU Time: '65358.830000'
2025-07-14 09:39:56 (477595): Guest Log:  *** Job finished ***
2025-07-14 09:39:56 (477595): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:37,263 | INFO     | all workflow threads have been joined
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:37,264 | INFO     | end of generic workflow (traces error code: 0)
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:37,264 | INFO     | traces error code: 0
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:37,264 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,218 | INFO     | PID=5770 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,219 | INFO     | found 0 job(s) in 20 queues
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,219 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,219 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,219 | INFO     | [monitor] control thread has ended
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,322 [wrapper] ==== pilot stdout END ====
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,326 [wrapper] ==== wrapper stdout RESUME ====
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,330 [wrapper] pilotpid: 5770
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,335 [wrapper] Pilot exit status: 0
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,651 [wrapper] pandaids: 6720592855
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,675 [wrapper] cleanup supervisor_pilot  2906 5771
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,679 [wrapper] Test setup, not cleaning
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,684 [wrapper] apfmon messages muted
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,688 [wrapper] ==== wrapper stdout END ====
2025-07-14 09:39:56 (477595): Guest Log: 2025-07-14 07:39:56,692 [wrapper] ==== wrapper stderr END ====
2025-07-14 09:39:56 (477595): Guest Log:  *** Error codes and diagnostics ***
2025-07-14 09:39:56 (477595): Guest Log:     "exeErrorCode": 0,
2025-07-14 09:39:56 (477595): Guest Log:     "exeErrorDiag": "",
2025-07-14 09:39:56 (477595): Guest Log:     "pilotErrorCode": 0,
2025-07-14 09:39:56 (477595): Guest Log:     "pilotErrorDiag": "",
2025-07-14 09:39:56 (477595): Guest Log:  *** Listing of results directory ***
2025-07-14 09:39:56 (477595): Guest Log: total 272516
2025-07-14 09:39:56 (477595): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul  5 00:20 pilot3.tar.gz
2025-07-14 09:39:56 (477595): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul  5 00:27 queuedata.json
2025-07-14 09:39:56 (477595): Guest Log: -rwx------. 1 atlas atlas     36292 Jul  5 00:30 runpilot2-wrapper.sh
2025-07-14 09:39:56 (477595): Guest Log: -rw-r--r--. 1 atlas atlas      9753 Jul 13 12:33 init_data.xml
2025-07-14 09:39:56 (477595): Guest Log: -rw-r--r--. 1 atlas atlas    542889 Jul 13 12:33 input.tar.gz
2025-07-14 09:39:56 (477595): Guest Log: -rw-r--r--. 1 atlas atlas     15095 Jul 13 12:33 start_atlas.sh
2025-07-14 09:39:56 (477595): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 13 12:33 EVNT.45482060._000239.pool.root.1 -> /data/./ATLAS.root_0
2025-07-14 09:39:56 (477595): Guest Log: -rw-r--r--. 1 atlas atlas      2532 Jul 13 12:33 pandaJob.out
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas    976227 Jul 13 12:33 agis_schedconf.cvmfs.json
2025-07-14 09:39:56 (477595): Guest Log: drwx------. 4 atlas atlas      4096 Jul 13 12:33 pilot3
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas 261940640 Jul 14 07:38 HITS.45482062._005906.pool.root.1
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas      1026 Jul 14 07:39 memory_monitor_summary.json
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas   1588641 Jul 14 07:39 agis_ddmendpoints.agis.ALL.json
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas    743686 Jul 14 07:39 log.45482062._005906.job.log.tgz.1
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas      7816 Jul 14 07:39 heartbeat.json
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas        95 Jul 14 07:39 pilot_heartbeat.json
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas       744 Jul 14 07:39 pilotlog.txt
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas   5911849 Jul 14 07:39 log.45482062._005906.job.log.1
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas       357 Jul 14 07:39 output.list
2025-07-14 09:39:56 (477595): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 14 07:39 runtime_log
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas   6676480 Jul 14 07:39 result.tar.gz
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas       657 Jul 14 07:39 xDVMDmEy5r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHO9KDmDELuGn.diag
2025-07-14 09:39:56 (477595): Guest Log: -rw-r--r--. 1 atlas atlas      8473 Jul 14 07:39 runtime_log.err
2025-07-14 09:39:56 (477595): Guest Log: Looking for outputfile HITS.45482062._005906.pool.root.1
2025-07-14 09:39:56 (477595): Guest Log: HITS file was successfully produced
2025-07-14 09:39:56 (477595): Guest Log: -rw-------. 1 atlas atlas 261940640 Jul 14 07:38 /home/atlas/RunAtlas/HITS.45482062._005906.pool.root.1
2025-07-14 09:39:57 (477595): Guest Log: Successfully finished the ATLAS job!
2025-07-14 09:39:57 (477595): Guest Log: Copying the results back to the shared directory!
2025-07-14 09:39:57 (477595): Guest Log:  *** Contents of shared directory: ***
2025-07-14 09:39:57 (477595): Guest Log: total 322540
2025-07-14 09:39:57 (477595): Guest Log: -rw-r--r--. 1 root root 323023003 Jul 13 12:32 ATLAS.root_0
2025-07-14 09:39:57 (477595): Guest Log: -rw-r--r--. 1 root root      9753 Jul 13 12:32 init_data.xml
2025-07-14 09:39:57 (477595): Guest Log: -rw-r--r--. 1 root root    542889 Jul 13 12:32 input.tar.gz
2025-07-14 09:39:57 (477595): Guest Log: -rw-r--r--. 1 root root   6676480 Jul 14 07:39 result.tar.gz
2025-07-14 09:39:57 (477595): Guest Log: -rw-r--r--. 1 root root     15095 Jul 13 12:32 start_atlas.sh
2025-07-14 09:39:57 (477595): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-14 09:39:57 (477595): VM Completion File Detected.
2025-07-14 09:39:57 (477595): Powering off VM.
2025-07-14 09:39:58 (477595): Successfully stopped VM.
2025-07-14 09:39:58 (477595): Deregistering VM. (boinc_068452d468c6af14, slot#4)
2025-07-14 09:39:59 (477595): Removing network bandwidth throttle group from VM.
2025-07-14 09:39:59 (477595): Removing VM from VirtualBox.
09:40:04 (477595): called boinc_finish(0)

</stderr_txt>
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