Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:07:18 (323931): wrapper (7.7.26015): starting
21:07:18 (323931): wrapper: running run_atlas (--nthreads 8)
[2025-07-12 21:07:18] Arguments: --nthreads 8
[2025-07-12 21:07:18] Threads: 8
[2025-07-12 21:07:18] Checking for CVMFS
[2025-07-12 21:07:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-12 21:07:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-12 21:07:19] Running cvmfs_config stat atlas.cern.ch
[2025-07-12 21:07:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-12 21:07:19] 2.12.6.0 3836034 6480 219324 148261 1 254 37891620 40960001 21058 16776704 0 16715895 99.513 18411911 20937 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-12 21:07:19] CVMFS is ok
[2025-07-12 21:07:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-12 21:07:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-12 21:07:19] Further information can be found at the LHC@home message board.
[2025-07-12 21:07:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-12 21:07:19] Checking for apptainer binary...
[2025-07-12 21:07:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-12 21:07:19] Running /usr/bin/apptainer --version
[2025-07-12 21:07:19] apptainer version 1.4.1-1.el9
[2025-07-12 21:07:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-12 21:07:19] lc-12-9.aglt2.org
[2025-07-12 21:07:19] apptainer works
[2025-07-12 21:07:19] Set ATHENA_PROC_NUMBER=8
[2025-07-12 21:07:19] Set ATHENA_CORE_NUMBER=8
[2025-07-12 21:07:19] Starting ATLAS job with PandaID=6720584619
[2025-07-12 21:07:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-12 22:41:50]  *** The last 200 lines of the pilot log: ***
[2025-07-12 22:41:50]  is_tar=False
[2025-07-12 22:41:50]  lfn=log.45482062._001423.job.log.tgz.1
[2025-07-12 22:41:50]  mtime=0
[2025-07-12 22:41:50]  protocol_id=None
[2025-07-12 22:41:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-12 22:41:50]  replicas=None
[2025-07-12 22:41:50]  scope=mc23_13p6TeV
[2025-07-12 22:41:50]  status=None
[2025-07-12 22:41:50]  status_code=0
[2025-07-12 22:41:50]  storage_token=
[2025-07-12 22:41:50]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6720584619/log.45482062._001423.job.log.tgz.1
[2025-07-12 22:41:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/1b/log.45482062._001423.job.log.tgz.1
[2025-07-12 22:41:50]  workdir=None
[2025-07-12 22:41:50] ]
[2025-07-12 22:41:50] 2025-07-13 02:41:11,230 | INFO     | transferring file log.45482062._001423.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6720584619/log.45482062._001423.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-12 22:41:50] 2025-07-13 02:41:11,231 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6720584619/log.45482062._001423.job.log.tgz.1 /tmp/boinchome/slots/0/log.45482062._001423.job
[2025-07-12 22:41:50] 2025-07-13 02:41:11,250 | INFO     | adding to output.list: log.45482062._001423.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/1b/log.45482062._001423.job.log.tg
[2025-07-12 22:41:50] 2025-07-13 02:41:11,251 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-12 22:41:50] 2025-07-13 02:41:11,251 | INFO     | summary of transferred files:
[2025-07-12 22:41:50] 2025-07-13 02:41:11,251 | INFO     |  -- lfn=log.45482062._001423.job.log.tgz.1, status_code=0, status=transferred
[2025-07-12 22:41:50] 2025-07-13 02:41:11,251 | INFO     | stage-out finished correctly
[2025-07-12 22:41:50] 2025-07-13 02:41:12,182 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-12 22:41:50] 2025-07-13 02:41:12,238 | INFO     | job 6720584619 has state=finished
[2025-07-12 22:41:50] 2025-07-13 02:41:12,239 | INFO     | preparing for final server update for job 6720584619 in state='finished'
[2025-07-12 22:41:50] 2025-07-13 02:41:12,303 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-12 22:41:50] 2025-07-13 02:41:12,304 | INFO     | this job has now completed (state=finished)
[2025-07-12 22:41:50] 2025-07-13 02:41:12,304 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-12 22:41:50] 2025-07-13 02:41:12,304 | INFO     | log transfer has been attempted: DONE
[2025-07-12 22:41:50] 2025-07-13 02:41:12,304 | INFO     | job 6720584619 has finished - writing final server update
[2025-07-12 22:41:50] 2025-07-13 02:41:12,305 | INFO     | total number of processed events: 400 (read)
[2025-07-12 22:41:50] 2025-07-13 02:41:12,305 | INFO     | executing command: lscpu
[2025-07-12 22:41:50] 2025-07-13 02:41:12,361 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-12 22:41:50] 2025-07-13 02:41:16,172 | WARNING  | process 342913 can no longer be monitored (due to stat problems) - aborting
[2025-07-12 22:41:50] 2025-07-13 02:41:16,172 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6720584619/memory_monitor_summary.json (trf name=prmon)
[2025-07-12 22:41:50] 2025-07-13 02:41:16,383 | INFO     | number of running child processes to parent process 342913: 1
[2025-07-12 22:41:50] 2025-07-13 02:41:16,383 | INFO     | maximum number of monitored processes: 6
[2025-07-12 22:41:50] 2025-07-13 02:41:16,945 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-12 22:41:50] 2025-07-13 02:41:16,967 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2698.5497708333332
[2025-07-12 22:41:50] 2025-07-13 02:41:16,980 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6720584619/memory_monitor_summary.json (trf name=prmon)
[2025-07-12 22:41:50] 2025-07-13 02:41:16,980 | INFO     | extracted standard info from prmon json
[2025-07-12 22:41:50] 2025-07-13 02:41:16,980 | INFO     | extracted standard memory fields from prmon json
[2025-07-12 22:41:50] 2025-07-13 02:41:16,980 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-12 22:41:50] 2025-07-13 02:41:16,981 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-12 22:41:50] 2025-07-13 02:41:16,981 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-12 22:41:50] 2025-07-13 02:41:16,982 | INFO     | fitting pss+swap vs Time
[2025-07-12 22:41:50] 2025-07-13 02:41:16,982 | INFO     | sum of square deviations: 190403570.0
[2025-07-12 22:41:50] 2025-07-13 02:41:16,982 | INFO     | sum of deviations: 1752161499.0
[2025-07-12 22:41:50] 2025-07-13 02:41:16,982 | INFO     | mean x: 1752371745.0
[2025-07-12 22:41:50] 2025-07-13 02:41:16,982 | INFO     | mean y: 2230796.6470588236
[2025-07-12 22:41:50] 2025-07-13 02:41:16,982 | INFO     | -- intersect: -16123718435.945827
[2025-07-12 22:41:50] 2025-07-13 02:41:16,982 | INFO     | intersect: -16123718435.945827
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | chi2: 0.051883628905774234
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | -- intersect: -16123718435.945827
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | current memory leak: 9.20 B/s (using 85 data points, chi2=0.05)
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | could have reported an average CPU frequency of 2689 MHz (7 samples)
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | ..............................
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | . Timing measurements:
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | . get job = 0 s
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | . initial setup = 2 s
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | . payload setup = 7 s
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | . stage-in = 0 s
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | . payload execution = 5593 s
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | . stage-out = 0 s
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | . log creation = 0 s
[2025-07-12 22:41:50] 2025-07-13 02:41:16,983 | INFO     | ..............................
[2025-07-12 22:41:50] 2025-07-13 02:41:17,277 | INFO     | 
[2025-07-12 22:41:50] 2025-07-13 02:41:17,277 | INFO     | job summary report
[2025-07-12 22:41:50] 2025-07-13 02:41:17,277 | INFO     | --------------------------------------------------
[2025-07-12 22:41:50] 2025-07-13 02:41:17,277 | INFO     | PanDA job id: 6720584619
[2025-07-12 22:41:50] 2025-07-13 02:41:17,277 | INFO     | task id: 45482062
[2025-07-12 22:41:50] 2025-07-13 02:41:17,277 | INFO     | errors: (none)
[2025-07-12 22:41:50] 2025-07-13 02:41:17,277 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-12 22:41:50] 2025-07-13 02:41:17,277 | INFO     | pilot state: finished 
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | transexitcode: 0
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | exeerrorcode: 0
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | exeerrordiag: 
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | exitcode: 0
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | exitmsg: OK
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | cpuconsumptiontime: 41750 s
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | nevents: 400
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | neventsw: 0
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | pid: 342913
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | pgrp: 342913
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | corecount: 8
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | event service: False
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | sizes: {0: 2393487, 4: 2393749, 11: 2393777, 5604: 2420269, 5605: 2429322, 5606: 2429322, 5611: 2429644}
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | --------------------------------------------------
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | 
[2025-07-12 22:41:50] 2025-07-13 02:41:17,278 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-12 22:41:50] 2025-07-13 02:41:17,300 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,300 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,300 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,300 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,300 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,300 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,300 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,300 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | job 6720584619 has completed (purged errors)
[2025-07-12 22:41:50] 2025-07-13 02:41:17,301 | INFO     | overall cleanup function is called
[2025-07-12 22:41:50] 2025-07-13 02:41:18,305 | INFO     | --- collectZombieJob: --- 10, [342913]
[2025-07-12 22:41:50] 2025-07-13 02:41:18,305 | INFO     | zombie collector waiting for pid 342913
[2025-07-12 22:41:50] 2025-07-13 02:41:18,305 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-12 22:41:50] 2025-07-13 02:41:18,305 | INFO     | collected zombie processes
[2025-07-12 22:41:50] 2025-07-13 02:41:18,306 | INFO     | will attempt to kill all subprocesses of pid=342913
[2025-07-12 22:41:50] 2025-07-13 02:41:18,536 | INFO     | process IDs to be killed: [342913] (in reverse order)
[2025-07-12 22:41:50] 2025-07-13 02:41:18,622 | WARNING  | found no corresponding commands to process id(s)
[2025-07-12 22:41:50] 2025-07-13 02:41:18,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-12 22:41:50] 2025-07-13 02:41:18,640 | INFO     | did not find any defunct processes belonging to 342913
[2025-07-12 22:41:50] 2025-07-13 02:41:18,651 | INFO     | did not find any defunct processes belonging to 342913
[2025-07-12 22:41:50] 2025-07-13 02:41:18,652 | INFO     | ready for new job
[2025-07-12 22:41:50] 2025-07-13 02:41:18,652 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-12 22:41:50] 2025-07-13 02:41:18,653 | INFO     | ***************************************
[2025-07-12 22:41:50] 2025-07-13 02:41:18,653 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-12 22:41:50] 2025-07-13 02:41:18,653 | INFO     | ***************************************
[2025-07-12 22:41:50] 2025-07-13 02:41:18,653 | INFO     | 
[2025-07-12 22:41:50] 2025-07-13 02:41:18,668 | INFO     | architecture information:
[2025-07-12 22:41:50] 2025-07-13 02:41:18,668 | INFO     | executing command: cat /etc/os-release
[2025-07-12 22:41:50] 2025-07-13 02:41:18,682 | INFO     | cat /etc/os-release:
[2025-07-12 22:41:50] NAME="CentOS Linux"
[2025-07-12 22:41:50] VERSION="7 (Core)"
[2025-07-12 22:41:50] ID="centos"
[2025-07-12 22:41:50] ID_LIKE="rhel fedora"
[2025-07-12 22:41:50] VERSION_ID="7"
[2025-07-12 22:41:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-12 22:41:50] ANSI_COLOR="0;31"
[2025-07-12 22:41:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-12 22:41:50] HOME_URL="https://www.centos.org/"
[2025-07-12 22:41:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-12 22:41:50] 
[2025-07-12 22:41:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-12 22:41:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-12 22:41:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-12 22:41:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-12 22:41:50] 
[2025-07-12 22:41:50] 2025-07-13 02:41:18,683 | INFO     | ***************************************
[2025-07-12 22:41:50] 2025-07-13 02:41:19,186 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-12 22:41:50] 2025-07-13 02:41:19,206 | INFO     | sufficient remaining disk space (419336028160 B)
[2025-07-12 22:41:50] 2025-07-13 02:41:19,206 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-12 22:41:50] 2025-07-13 02:41:19,206 | INFO     | current server update state: UPDATING_FINAL
[2025-07-12 22:41:50] 2025-07-13 02:41:19,207 | INFO     | update_server=False
[2025-07-12 22:41:50] 2025-07-13 02:41:19,207 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-12 22:41:50] 2025-07-13 02:41:19,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-12 22:41:50] 2025-07-13 02:41:19,224 | INFO     | all job control threads have been joined
[2025-07-12 22:41:50] 2025-07-13 02:41:19,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-12 22:41:50] 2025-07-13 02:41:19,829 | INFO     | all payload control threads have been joined
[2025-07-12 22:41:50] 2025-07-13 02:41:19,891 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-12 22:41:50] 2025-07-13 02:41:19,892 | INFO     | aborting loop
[2025-07-12 22:41:50] 2025-07-13 02:41:19,926 | INFO     | all data control threads have been joined
[2025-07-12 22:41:50] 2025-07-13 02:41:20,212 | INFO     | [job] retrieve thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:20,213 | INFO     | [payload] validate_pre thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:20,229 | INFO     | [job] control thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:20,300 | INFO     | [payload] execute_payloads thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:20,680 | INFO     | [payload] failed_post thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:20,835 | INFO     | [payload] control thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:20,897 | INFO     | [job] job monitor thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:20,931 | INFO     | [data] control thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:21,030 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:21,244 | INFO     | [payload] validate_post thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:21,249 | INFO     | [data] copytool_in thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:21,286 | INFO     | [job] validate thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:21,316 | INFO     | [data] copytool_out thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:21,584 | INFO     | [job] create_data_payload thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:22,039 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-12 22:41:50] 2025-07-13 02:41:23,044 | INFO     | [job] queue monitor thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:23,214 | INFO     | [data] queue_monitor thread has finished
[2025-07-12 22:41:50] 2025-07-13 02:41:24,602 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140662157121344)>', '<ExcThread(monitor, started 140661445617408)>']
[2025-07-12 22:41:50] 2025-07-13 02:41:29,627 | INFO     | all workflow threads have been joined
[2025-07-12 22:41:50] 2025-07-13 02:41:29,628 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-12 22:41:50] 2025-07-13 02:41:29,628 | INFO     | traces error code: 0
[2025-07-12 22:41:50] 2025-07-13 02:41:29,628 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-12 22:41:50] 2025-07-13 02:41:50,292 | INFO     | PID=328510 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-12 22:41:50] 2025-07-13 02:41:50,292 | INFO     | .. there are 29 such processes running
[2025-07-12 22:41:50] 2025-07-13 02:41:50,292 | INFO     | found 0 job(s) in 20 queues
[2025-07-12 22:41:50] 2025-07-13 02:41:50,292 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-12 22:41:50] 2025-07-13 02:41:50,292 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-12 22:41:50] 2025-07-13 02:41:50,292 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-12 22:41:50] 2025-07-13 02:41:50,293 | CRITICAL | thread 'MainThread' is not alive
[2025-07-12 22:41:50] 2025-07-13 02:41:50,293 | INFO     | [monitor] control thread has ended
[2025-07-12 22:41:50] 2025-07-13 02:41:50,442 [wrapper] ==== pilot stdout END ====
[2025-07-12 22:41:50] 2025-07-13 02:41:50,446 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-12 22:41:50] 2025-07-13 02:41:50,449 [wrapper] pilotpid: 328510
[2025-07-12 22:41:50] 2025-07-13 02:41:50,452 [wrapper] Pilot exit status: 0
[2025-07-12 22:41:50] 2025-07-13 02:41:50,464 [wrapper] pandaids: 6720584619
[2025-07-12 22:41:50] 2025-07-13 02:41:50,526 [wrapper] cleanup supervisor_pilot  692105 328511
[2025-07-12 22:41:50] 2025-07-13 02:41:50,530 [wrapper] Test setup, not cleaning
[2025-07-12 22:41:50] 2025-07-13 02:41:50,533 [wrapper] apfmon messages muted
[2025-07-12 22:41:50] 2025-07-13 02:41:50,536 [wrapper] ==== wrapper stdout END ====
[2025-07-12 22:41:50] 2025-07-13 02:41:50,539 [wrapper] ==== wrapper stderr END ====
[2025-07-12 22:41:50]  *** Error codes and diagnostics ***
[2025-07-12 22:41:50]     "exeErrorCode": 0,
[2025-07-12 22:41:50]     "exeErrorDiag": "",
[2025-07-12 22:41:50]     "pilotErrorCode": 0,
[2025-07-12 22:41:50]     "pilotErrorDiag": "",
[2025-07-12 22:41:50]  *** Listing of results directory ***
[2025-07-12 22:41:50] total 578576
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas    530466 Jul  4 17:18 pilot3.tar.gz
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas      5112 Jul  4 17:56 queuedata.json
[2025-07-12 22:41:50] -rwx------. 1 boincer umatlas     36292 Jul  4 17:57 runpilot2-wrapper.sh
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas       100 Jul 12 21:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-12 22:41:50] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 12 21:07 run_atlas
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas       105 Jul 12 21:07 job.xml
[2025-07-12 22:41:50] -rw-r--r--. 2 boincer umatlas 322311335 Jul 12 21:07 EVNT.45482060._000057.pool.root.1
[2025-07-12 22:41:50] -rw-r--r--. 2 boincer umatlas     15095 Jul 12 21:07 start_atlas.sh
[2025-07-12 22:41:50] drwxrwx--x. 2 boincer umatlas        68 Jul 12 21:07 shared
[2025-07-12 22:41:50] -rw-r--r--. 2 boincer umatlas    542878 Jul 12 21:07 input.tar.gz
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas         0 Jul 12 21:07 boinc_lockfile
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas      2531 Jul 12 21:07 pandaJob.out
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas    976550 Jul 12 21:07 agis_schedconf.cvmfs.json
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas   1588641 Jul 12 21:07 agis_ddmendpoints.agis.ALL.json
[2025-07-12 22:41:50] drwx------. 4 boincer umatlas      4096 Jul 12 21:07 pilot3
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas 264553847 Jul 12 22:40 HITS.45482062._001423.pool.root.1
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas       529 Jul 12 22:40 boinc_task_state.xml
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas      6881 Jul 12 22:41 init_data.xml
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas        95 Jul 12 22:41 pilot_heartbeat.json
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas      1035 Jul 12 22:41 memory_monitor_summary.json
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas    328486 Jul 12 22:41 log.45482062._001423.job.log.tgz.1
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas      7807 Jul 12 22:41 heartbeat.json
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas      8192 Jul 12 22:41 boinc_mmap_file
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas        27 Jul 12 22:41 wrapper_checkpoint.txt
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas       892 Jul 12 22:41 pilotlog.txt
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas    539324 Jul 12 22:41 log.45482062._001423.job.log.1
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas       357 Jul 12 22:41 output.list
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas       620 Jul 12 22:41 runtime_log
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas    890880 Jul 12 22:41 result.tar.gz
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas      8655 Jul 12 22:41 runtime_log.err
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas       651 Jul 12 22:41 GSyLDmya3r7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlg8KDmYo544m.diag
[2025-07-12 22:41:50] -rw-r--r--. 1 boincer umatlas     21548 Jul 12 22:41 stderr.txt
[2025-07-12 22:41:50] HITS file was successfully produced:
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas 264553847 Jul 12 22:40 shared/HITS.pool.root.1
[2025-07-12 22:41:50]  *** Contents of shared directory: ***
[2025-07-12 22:41:50] total 574536
[2025-07-12 22:41:50] -rw-r--r--. 2 boincer umatlas 322311335 Jul 12 21:07 ATLAS.root_0
[2025-07-12 22:41:50] -rw-r--r--. 2 boincer umatlas     15095 Jul 12 21:07 start_atlas.sh
[2025-07-12 22:41:50] -rw-r--r--. 2 boincer umatlas    542878 Jul 12 21:07 input.tar.gz
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas 264553847 Jul 12 22:40 HITS.pool.root.1
[2025-07-12 22:41:50] -rw-------. 1 boincer umatlas    890880 Jul 12 22:41 result.tar.gz
22:41:51 (323931): run_atlas exited; CPU time 42028.781898
22:41:51 (323931): called boinc_finish(0)

</stderr_txt>
]]>

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