Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:05:02 (1524869): wrapper (7.7.26015): starting
15:05:02 (1524869): wrapper: running run_atlas (--nthreads 8)
[2025-07-12 15:05:02] Arguments: --nthreads 8
[2025-07-12 15:05:02] Threads: 8
[2025-07-12 15:05:02] Checking for CVMFS
[2025-07-12 15:05:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-12 15:05:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-12 15:05:02] Running cvmfs_config stat atlas.cern.ch
[2025-07-12 15:05:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-12 15:05:02] 2.12.6.0 4046414 5922 378848 148253 0 818 16673616 32935937 24773 16776704 0 38674057 99.198 89246206 36518 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-12 15:05:02] CVMFS is ok
[2025-07-12 15:05:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-12 15:05:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-12 15:05:02] Further information can be found at the LHC@home message board.
[2025-07-12 15:05:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-12 15:05:02] Checking for apptainer binary...
[2025-07-12 15:05:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-12 15:05:02] Running /usr/bin/apptainer --version
[2025-07-12 15:05:02] apptainer version 1.4.1-1.el9
[2025-07-12 15:05:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-12 15:05:02] c7-9-15.aglt2.org
[2025-07-12 15:05:02] apptainer works
[2025-07-12 15:05:02] Set ATHENA_PROC_NUMBER=8
[2025-07-12 15:05:02] Set ATHENA_CORE_NUMBER=8
[2025-07-12 15:05:02] Starting ATLAS job with PandaID=6720416750
[2025-07-12 15:05:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-12 16:31:18]  *** The last 200 lines of the pilot log: ***
[2025-07-12 16:31:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-12 16:31:18]  replicas=None
[2025-07-12 16:31:18]  scope=mc23_13p6TeV
[2025-07-12 16:31:18]  status=None
[2025-07-12 16:31:18]  status_code=0
[2025-07-12 16:31:18]  storage_token=
[2025-07-12 16:31:18]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6720416750/log.45482148._002361.job.log.tgz.1
[2025-07-12 16:31:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/aa/log.45482148._002361.job.log.tgz.1
[2025-07-12 16:31:18]  workdir=None
[2025-07-12 16:31:18] ]
[2025-07-12 16:31:18] 2025-07-12 20:30:34,607 | INFO     | transferring file log.45482148._002361.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6720416750/log.45482148._002361.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-12 16:31:18] 2025-07-12 20:30:34,607 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6720416750/log.45482148._002361.job.log.tgz.1 /tmp/boinchome/slots/0/log.45482148._002361.job
[2025-07-12 16:31:18] 2025-07-12 20:30:34,625 | INFO     | adding to output.list: log.45482148._002361.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/aa/log.45482148._002361.job.log.tg
[2025-07-12 16:31:18] 2025-07-12 20:30:34,626 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-12 16:31:18] 2025-07-12 20:30:34,626 | INFO     | summary of transferred files:
[2025-07-12 16:31:18] 2025-07-12 20:30:34,626 | INFO     |  -- lfn=log.45482148._002361.job.log.tgz.1, status_code=0, status=transferred
[2025-07-12 16:31:18] 2025-07-12 20:30:34,626 | INFO     | stage-out finished correctly
[2025-07-12 16:31:18] 2025-07-12 20:30:37,222 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-12 16:31:18] 2025-07-12 20:30:37,274 | INFO     | job 6720416750 has state=finished
[2025-07-12 16:31:18] 2025-07-12 20:30:37,274 | INFO     | preparing for final server update for job 6720416750 in state='finished'
[2025-07-12 16:31:18] 2025-07-12 20:30:37,334 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-12 16:31:18] 2025-07-12 20:30:37,335 | INFO     | this job has now completed (state=finished)
[2025-07-12 16:31:18] 2025-07-12 20:30:37,335 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-12 16:31:18] 2025-07-12 20:30:37,335 | INFO     | log transfer has been attempted: DONE
[2025-07-12 16:31:18] 2025-07-12 20:30:37,335 | INFO     | job 6720416750 has finished - writing final server update
[2025-07-12 16:31:18] 2025-07-12 20:30:37,335 | INFO     | total number of processed events: 400 (read)
[2025-07-12 16:31:18] 2025-07-12 20:30:37,339 | INFO     | executing command: lscpu
[2025-07-12 16:31:18] 2025-07-12 20:30:37,415 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-12 16:31:18] 2025-07-12 20:30:39,448 | WARNING  | process 1535311 can no longer be monitored (due to stat problems) - aborting
[2025-07-12 16:31:18] 2025-07-12 20:30:39,448 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6720416750/memory_monitor_summary.json (trf name=prmon)
[2025-07-12 16:31:18] 2025-07-12 20:30:39,449 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6720416750/memory_monitor_summary.json (trf name=prmon)
[2025-07-12 16:31:18] 2025-07-12 20:30:39,851 | INFO     | number of running child processes to parent process 1535311: 1
[2025-07-12 16:31:18] 2025-07-12 20:30:39,852 | INFO     | maximum number of monitored processes: 6
[2025-07-12 16:31:18] 2025-07-12 20:30:41,655 | INFO     | PID=1528655 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-12 16:31:18] 2025-07-12 20:30:41,664 | INFO     | .. there are 50 such processes running
[2025-07-12 16:31:18] 2025-07-12 20:30:42,356 | INFO     | monitor loop #368: job 0:6720416750 is in state 'finished'
[2025-07-12 16:31:18] 2025-07-12 20:30:42,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-12 16:31:18] 2025-07-12 20:30:44,576 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-12 16:31:18] 2025-07-12 20:30:44,581 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3788.6288125
[2025-07-12 16:31:18] 2025-07-12 20:30:44,594 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6720416750/memory_monitor_summary.json (trf name=prmon)
[2025-07-12 16:31:18] 2025-07-12 20:30:44,594 | INFO     | extracted standard info from prmon json
[2025-07-12 16:31:18] 2025-07-12 20:30:44,594 | INFO     | extracted standard memory fields from prmon json
[2025-07-12 16:31:18] 2025-07-12 20:30:44,594 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-12 16:31:18] 2025-07-12 20:30:44,595 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-12 16:31:18] 2025-07-12 20:30:44,595 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-12 16:31:18] 2025-07-12 20:30:44,596 | INFO     | fitting pss+swap vs Time
[2025-07-12 16:31:18] 2025-07-12 20:30:44,596 | INFO     | sum of square deviations: 141539398.0
[2025-07-12 16:31:18] 2025-07-12 20:30:44,596 | INFO     | sum of deviations: -4765349829.0
[2025-07-12 16:31:18] 2025-07-12 20:30:44,596 | INFO     | mean x: 1752349764.0
[2025-07-12 16:31:18] 2025-07-12 20:30:44,596 | INFO     | mean y: 2310690.5454545454
[2025-07-12 16:31:18] 2025-07-12 20:30:44,596 | INFO     | -- intersect: 59000439594.73643
[2025-07-12 16:31:18] 2025-07-12 20:30:44,596 | INFO     | intersect: 59000439594.73643
[2025-07-12 16:31:18] 2025-07-12 20:30:44,596 | INFO     | chi2: 0.12635222803355733
[2025-07-12 16:31:18] 2025-07-12 20:30:44,596 | INFO     | -- intersect: 59000439594.73643
[2025-07-12 16:31:18] 2025-07-12 20:30:44,596 | INFO     | current memory leak: -33.67 B/s (using 77 data points, chi2=0.13)
[2025-07-12 16:31:18] 2025-07-12 20:30:44,597 | INFO     | could have reported an average CPU frequency of 3761 MHz (6 samples)
[2025-07-12 16:31:18] 2025-07-12 20:30:44,597 | INFO     | ..............................
[2025-07-12 16:31:18] 2025-07-12 20:30:44,597 | INFO     | . Timing measurements:
[2025-07-12 16:31:18] 2025-07-12 20:30:44,597 | INFO     | . get job = 0 s
[2025-07-12 16:31:18] 2025-07-12 20:30:44,597 | INFO     | . initial setup = 2 s
[2025-07-12 16:31:18] 2025-07-12 20:30:44,597 | INFO     | . payload setup = 7 s
[2025-07-12 16:31:18] 2025-07-12 20:30:44,597 | INFO     | . stage-in = 0 s
[2025-07-12 16:31:18] 2025-07-12 20:30:44,597 | INFO     | . payload execution = 5093 s
[2025-07-12 16:31:18] 2025-07-12 20:30:44,597 | INFO     | . stage-out = 0 s
[2025-07-12 16:31:18] 2025-07-12 20:30:44,597 | INFO     | . log creation = 0 s
[2025-07-12 16:31:18] 2025-07-12 20:30:44,597 | INFO     | ..............................
[2025-07-12 16:31:18] 2025-07-12 20:30:44,650 | INFO     | 
[2025-07-12 16:31:18] 2025-07-12 20:30:44,650 | INFO     | job summary report
[2025-07-12 16:31:18] 2025-07-12 20:30:44,650 | INFO     | --------------------------------------------------
[2025-07-12 16:31:18] 2025-07-12 20:30:44,650 | INFO     | PanDA job id: 6720416750
[2025-07-12 16:31:18] 2025-07-12 20:30:44,650 | INFO     | task id: 45482148
[2025-07-12 16:31:18] 2025-07-12 20:30:44,650 | INFO     | errors: (none)
[2025-07-12 16:31:18] 2025-07-12 20:30:44,650 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-12 16:31:18] 2025-07-12 20:30:44,650 | INFO     | pilot state: finished 
[2025-07-12 16:31:18] 2025-07-12 20:30:44,650 | INFO     | transexitcode: 0
[2025-07-12 16:31:18] 2025-07-12 20:30:44,650 | INFO     | exeerrorcode: 0
[2025-07-12 16:31:18] 2025-07-12 20:30:44,650 | INFO     | exeerrordiag: 
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | exitcode: 0
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | exitmsg: OK
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | cpuconsumptiontime: 34616 s
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | nevents: 400
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | neventsw: 0
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | pid: 1535311
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | pgrp: 1535311
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | corecount: 8
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | event service: False
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | sizes: {0: 2393400, 1: 2393599, 5: 2393861, 11: 2393917, 5105: 2420236, 5107: 2429234, 5109: 2429418, 5117: 2429612}
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | --------------------------------------------------
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | 
[2025-07-12 16:31:18] 2025-07-12 20:30:44,651 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,674 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,675 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-12 16:31:18] 2025-07-12 20:30:44,675 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,675 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-12 16:31:18] 2025-07-12 20:30:44,675 | INFO     | job 6720416750 has completed (purged errors)
[2025-07-12 16:31:18] 2025-07-12 20:30:44,675 | INFO     | overall cleanup function is called
[2025-07-12 16:31:18] 2025-07-12 20:30:45,683 | INFO     | --- collectZombieJob: --- 10, [1535311]
[2025-07-12 16:31:18] 2025-07-12 20:30:45,683 | INFO     | zombie collector waiting for pid 1535311
[2025-07-12 16:31:18] 2025-07-12 20:30:45,683 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-12 16:31:18] 2025-07-12 20:30:45,683 | INFO     | collected zombie processes
[2025-07-12 16:31:18] 2025-07-12 20:30:45,683 | INFO     | will attempt to kill all subprocesses of pid=1535311
[2025-07-12 16:31:18] 2025-07-12 20:30:46,043 | INFO     | process IDs to be killed: [1535311] (in reverse order)
[2025-07-12 16:31:18] 2025-07-12 20:30:46,185 | WARNING  | found no corresponding commands to process id(s)
[2025-07-12 16:31:18] 2025-07-12 20:30:46,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-12 16:31:18] 2025-07-12 20:30:46,210 | INFO     | did not find any defunct processes belonging to 1535311
[2025-07-12 16:31:18] 2025-07-12 20:30:46,230 | INFO     | did not find any defunct processes belonging to 1535311
[2025-07-12 16:31:18] 2025-07-12 20:30:46,231 | INFO     | ready for new job
[2025-07-12 16:31:18] 2025-07-12 20:30:46,231 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-12 16:31:18] 2025-07-12 20:30:46,232 | INFO     | ***************************************
[2025-07-12 16:31:18] 2025-07-12 20:30:46,232 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-12 16:31:18] 2025-07-12 20:30:46,232 | INFO     | ***************************************
[2025-07-12 16:31:18] 2025-07-12 20:30:46,232 | INFO     | 
[2025-07-12 16:31:18] 2025-07-12 20:30:46,250 | INFO     | architecture information:
[2025-07-12 16:31:18] 2025-07-12 20:30:46,250 | INFO     | executing command: cat /etc/os-release
[2025-07-12 16:31:18] 2025-07-12 20:30:46,262 | INFO     | cat /etc/os-release:
[2025-07-12 16:31:18] NAME="CentOS Linux"
[2025-07-12 16:31:18] VERSION="7 (Core)"
[2025-07-12 16:31:18] ID="centos"
[2025-07-12 16:31:18] ID_LIKE="rhel fedora"
[2025-07-12 16:31:18] VERSION_ID="7"
[2025-07-12 16:31:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-12 16:31:18] ANSI_COLOR="0;31"
[2025-07-12 16:31:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-12 16:31:18] HOME_URL="https://www.centos.org/"
[2025-07-12 16:31:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-12 16:31:18] 
[2025-07-12 16:31:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-12 16:31:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-12 16:31:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-12 16:31:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-12 16:31:18] 
[2025-07-12 16:31:18] 2025-07-12 20:30:46,262 | INFO     | ***************************************
[2025-07-12 16:31:18] 2025-07-12 20:30:46,764 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-12 16:31:18] 2025-07-12 20:30:46,786 | INFO     | sufficient remaining disk space (76343672832 B)
[2025-07-12 16:31:18] 2025-07-12 20:30:46,786 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-12 16:31:18] 2025-07-12 20:30:46,786 | INFO     | current server update state: UPDATING_FINAL
[2025-07-12 16:31:18] 2025-07-12 20:30:46,787 | INFO     | update_server=False
[2025-07-12 16:31:18] 2025-07-12 20:30:46,787 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-12 16:31:18] 2025-07-12 20:30:46,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-12 16:31:18] 2025-07-12 20:30:46,787 | INFO     | aborting loop
[2025-07-12 16:31:18] 2025-07-12 20:30:47,113 | INFO     | all data control threads have been joined
[2025-07-12 16:31:18] 2025-07-12 20:30:47,634 | INFO     | all payload control threads have been joined
[2025-07-12 16:31:18] 2025-07-12 20:30:47,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-12 16:31:18] 2025-07-12 20:30:47,791 | INFO     | [job] retrieve thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:47,792 | INFO     | [job] job monitor thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:47,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-12 16:31:18] 2025-07-12 20:30:47,882 | INFO     | all job control threads have been joined
[2025-07-12 16:31:18] 2025-07-12 20:30:47,893 | INFO     | [job] validate thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:48,118 | INFO     | [data] control thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:48,148 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:48,274 | INFO     | [payload] validate_post thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:48,318 | INFO     | [job] create_data_payload thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:48,396 | INFO     | [data] copytool_in thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:48,640 | INFO     | [payload] control thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:48,654 | INFO     | [payload] validate_pre thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:48,820 | INFO     | [payload] execute_payloads thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:48,834 | INFO     | [payload] failed_post thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:48,888 | INFO     | [job] control thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:49,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-12 16:31:18] 2025-07-12 20:30:49,742 | INFO     | [data] copytool_out thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:50,669 | INFO     | [job] queue monitor thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:51,800 | INFO     | [data] queue_monitor thread has finished
[2025-07-12 16:31:18] 2025-07-12 20:30:53,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140455438260032)>', '<ExcThread(monitor, started 140454800639744)>']
[2025-07-12 16:31:18] 2025-07-12 20:30:58,474 | INFO     | all workflow threads have been joined
[2025-07-12 16:31:18] 2025-07-12 20:30:58,474 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-12 16:31:18] 2025-07-12 20:30:58,475 | INFO     | traces error code: 0
[2025-07-12 16:31:18] 2025-07-12 20:30:58,475 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-12 16:31:18] 2025-07-12 20:31:18,264 | INFO     | PID=1528655 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-12 16:31:18] 2025-07-12 20:31:18,265 | INFO     | .. there are 50 such processes running
[2025-07-12 16:31:18] 2025-07-12 20:31:18,265 | INFO     | found 0 job(s) in 20 queues
[2025-07-12 16:31:18] 2025-07-12 20:31:18,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-12 16:31:18] 2025-07-12 20:31:18,265 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-12 16:31:18] 2025-07-12 20:31:18,265 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-12 16:31:18] 2025-07-12 20:31:18,265 | INFO     | [monitor] control thread has ended
[2025-07-12 16:31:18] 2025-07-12 20:31:18,389 [wrapper] ==== pilot stdout END ====
[2025-07-12 16:31:18] 2025-07-12 20:31:18,392 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-12 16:31:18] 2025-07-12 20:31:18,420 [wrapper] pilotpid: 1528655
[2025-07-12 16:31:18] 2025-07-12 20:31:18,422 [wrapper] Pilot exit status: 0
[2025-07-12 16:31:18] 2025-07-12 20:31:18,444 [wrapper] pandaids: 6720416750
[2025-07-12 16:31:18] 2025-07-12 20:31:18,562 [wrapper] cleanup supervisor_pilot 2085670 1528656
[2025-07-12 16:31:18] 2025-07-12 20:31:18,564 [wrapper] Test setup, not cleaning
[2025-07-12 16:31:18] 2025-07-12 20:31:18,570 [wrapper] apfmon messages muted
[2025-07-12 16:31:18] 2025-07-12 20:31:18,600 [wrapper] ==== wrapper stdout END ====
[2025-07-12 16:31:18] 2025-07-12 20:31:18,602 [wrapper] ==== wrapper stderr END ====
[2025-07-12 16:31:18]  *** Error codes and diagnostics ***
[2025-07-12 16:31:18]     "exeErrorCode": 0,
[2025-07-12 16:31:18]     "exeErrorDiag": "",
[2025-07-12 16:31:18]     "pilotErrorCode": 0,
[2025-07-12 16:31:18]     "pilotErrorDiag": "",
[2025-07-12 16:31:18]  *** Listing of results directory ***
[2025-07-12 16:31:18] total 576060
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas    530466 Jul  4 14:31 pilot3.tar.gz
[2025-07-12 16:31:18] -rwx------. 1 boincer umatlas     36292 Jul  4 14:40 runpilot2-wrapper.sh
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas      5112 Jul  4 14:41 queuedata.json
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas       100 Jul 12 15:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-12 16:31:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 12 15:05 run_atlas
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas       105 Jul 12 15:05 job.xml
[2025-07-12 16:31:18] -rw-r--r--. 2 boincer umatlas 321058785 Jul 12 15:05 EVNT.45482146._000095.pool.root.1
[2025-07-12 16:31:18] -rw-r--r--. 2 boincer umatlas    542905 Jul 12 15:05 input.tar.gz
[2025-07-12 16:31:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 12 15:05 start_atlas.sh
[2025-07-12 16:31:18] drwxrwx--x. 2 boincer umatlas      4096 Jul 12 15:05 shared
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas         0 Jul 12 15:05 boinc_lockfile
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas      2615 Jul 12 15:05 pandaJob.out
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas    976574 Jul 12 15:05 agis_schedconf.cvmfs.json
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas   1588641 Jul 12 15:05 agis_ddmendpoints.agis.ALL.json
[2025-07-12 16:31:18] drwx------. 4 boincer umatlas      4096 Jul 12 15:05 pilot3
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas      7160 Jul 12 16:29 init_data.xml
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas 263357641 Jul 12 16:30 HITS.45482148._002361.pool.root.1
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas       529 Jul 12 16:30 boinc_task_state.xml
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas      1046 Jul 12 16:30 memory_monitor_summary.json
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas    308414 Jul 12 16:30 log.45482148._002361.job.log.tgz.1
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas      7790 Jul 12 16:30 heartbeat.json
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas        95 Jul 12 16:30 pilot_heartbeat.json
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas       823 Jul 12 16:31 pilotlog.txt
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas      8192 Jul 12 16:31 boinc_mmap_file
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas    495413 Jul 12 16:31 log.45482148._002361.job.log.1
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas        27 Jul 12 16:31 wrapper_checkpoint.txt
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas       357 Jul 12 16:31 output.list
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas       620 Jul 12 16:31 runtime_log
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas    819200 Jul 12 16:31 result.tar.gz
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas      8655 Jul 12 16:31 runtime_log.err
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas       656 Jul 12 16:31 f8KLDmqV0r7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxKnKDmi8Xeam.diag
[2025-07-12 16:31:18] -rw-r--r--. 1 boincer umatlas     22042 Jul 12 16:31 stderr.txt
[2025-07-12 16:31:18] HITS file was successfully produced:
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas 263357641 Jul 12 16:30 shared/HITS.pool.root.1
[2025-07-12 16:31:18]  *** Contents of shared directory: ***
[2025-07-12 16:31:18] total 572076
[2025-07-12 16:31:18] -rw-r--r--. 2 boincer umatlas 321058785 Jul 12 15:05 ATLAS.root_0
[2025-07-12 16:31:18] -rw-r--r--. 2 boincer umatlas    542905 Jul 12 15:05 input.tar.gz
[2025-07-12 16:31:18] -rw-r--r--. 2 boincer umatlas     15095 Jul 12 15:05 start_atlas.sh
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas 263357641 Jul 12 16:30 HITS.pool.root.1
[2025-07-12 16:31:18] -rw-------. 1 boincer umatlas    819200 Jul 12 16:31 result.tar.gz
16:31:20 (1524869): run_atlas exited; CPU time 34726.306120
16:31:20 (1524869): called boinc_finish(0)

</stderr_txt>
]]>

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