Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
17:08:02 (532530): wrapper (7.7.26015): starting
17:08:02 (532530): wrapper: running run_atlas (--nthreads 4)
[2025-07-12 17:08:02] Arguments: --nthreads 4
[2025-07-12 17:08:02] Threads: 4
[2025-07-12 17:08:02] Checking for CVMFS
[2025-07-12 17:08:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-12 17:08:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-12 17:08:03] Running cvmfs_config stat atlas.cern.ch
[2025-07-12 17:08:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-12 17:08:04] 2.13.1.0 468848 80 44632 148244 3 187 2572177 4194305 2754 130560 0 176924 99.991 2761 81 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-12 17:08:04] CVMFS is ok
[2025-07-12 17:08:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-12 17:08:04] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-12 17:08:04] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-12 17:08:04] Further information can be found at the LHC@home message board.
[2025-07-12 17:08:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-12 17:08:04] Checking for apptainer binary...
[2025-07-12 17:08:04] apptainer is not installed, using version from CVMFS
[2025-07-12 17:08:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-12 17:08:04] Ryze
[2025-07-12 17:08:04] apptainer works
[2025-07-12 17:08:04] Set ATHENA_PROC_NUMBER=4
[2025-07-12 17:08:04] Set ATHENA_CORE_NUMBER=4
[2025-07-12 17:08:04] Starting ATLAS job with PandaID=6720217729
[2025-07-12 17:08:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-12 19:23:05]  *** The last 200 lines of the pilot log: ***
[2025-07-12 19:23:05] 2025-07-12 17:22:34,023 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-12 19:23:05] 2025-07-12 17:22:34,023 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-12 19:23:05] 2025-07-12 17:22:34,024 | INFO     | fitting pss+swap vs Time
[2025-07-12 19:23:05] 2025-07-12 17:22:34,024 | INFO     | sum of square deviations: 713140813.0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,024 | INFO     | sum of deviations: 24471263128.0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,024 | INFO     | mean x: 1752336911.5
[2025-07-12 19:23:05] 2025-07-12 17:22:34,024 | INFO     | mean y: 2343722.1818181816
[2025-07-12 19:23:05] 2025-07-12 17:22:34,024 | INFO     | -- intersect: -60128694732.664474
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | intersect: -60128694732.664474
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | chi2: 1.358914871495443
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | sum of square deviations: 635130048.0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | sum of deviations: 23374981619.999996
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | mean x: 1752336759.0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | mean y: 2341578.0787401577
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | -- intersect: -64489709557.998764
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | intersect: -64489709557.998764
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | chi2: 1.3594845014728116
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | current chi2=1.3594845014728116 (change=-0.041918003056488407 %)
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | right removable region: 126
[2025-07-12 19:23:05] 2025-07-12 17:22:34,025 | INFO     | sum of square deviations: 635130048.0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | sum of deviations: 7296141496.999996
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | mean x: 1752337064.0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | mean y: 2376642.6062992127
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | -- intersect: -20127830091.65537
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | intersect: -20127830091.65537
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | chi2: 0.004394595670299302
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | current chi2=0.004394595670299302 (change=99.67660993617186 %)
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | sum of square deviations: 563026370.5
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | sum of deviations: 6826137473.000003
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | mean x: 1752337216.5
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | mean y: 2377665.295081967
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | -- intersect: -21242976665.55179
[2025-07-12 19:23:05] 2025-07-12 17:22:34,026 | INFO     | intersect: -21242976665.55179
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | chi2: 0.0024385551491482222
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | current chi2=0.0024385551491482222 (change=44.51013626511537 %)
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | sum of square deviations: 496597218.0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | sum of deviations: 5723684839.0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | mean x: 1752337369.0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | mean y: 2380191.4017094015
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | -- intersect: -20194726172.08671
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | intersect: -20194726172.08671
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | chi2: 0.002140989754814463
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | current chi2=0.002140989754814463 (change=12.20252879815729 %)
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | left removable region: 30
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | sum of square deviations: 274312120.0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | sum of deviations: 3533290251.0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,027 | INFO     | mean x: 1752337643.5
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | mean y: 2384723.8125
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | -- intersect: -22568683270.699966
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | intersect: -22568683270.699966
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | chi2: 0.0015609551071141684
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | -- intersect: -22568683270.699966
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | current memory leak: 12.88 B/s (using 96 data points, chi2=0.00)
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | could have reported an average CPU frequency of 3281 MHz (8 samples)
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | ..............................
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | . Timing measurements:
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | . get job = 0 s
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | . initial setup = 1 s
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | . payload setup = 5 s
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | . stage-in = 0 s
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | . payload execution = 8019 s
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | . stage-out = 0 s
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | . log creation = 0 s
[2025-07-12 19:23:05] 2025-07-12 17:22:34,028 | INFO     | ..............................
[2025-07-12 19:23:05] 2025-07-12 17:22:34,070 | INFO     | 
[2025-07-12 19:23:05] 2025-07-12 17:22:34,070 | INFO     | job summary report
[2025-07-12 19:23:05] 2025-07-12 17:22:34,070 | INFO     | --------------------------------------------------
[2025-07-12 19:23:05] 2025-07-12 17:22:34,070 | INFO     | PanDA job id: 6720217729
[2025-07-12 19:23:05] 2025-07-12 17:22:34,070 | INFO     | task id: 45481997
[2025-07-12 19:23:05] 2025-07-12 17:22:34,070 | INFO     | errors: (none)
[2025-07-12 19:23:05] 2025-07-12 17:22:34,070 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-12 19:23:05] 2025-07-12 17:22:34,070 | INFO     | pilot state: finished 
[2025-07-12 19:23:05] 2025-07-12 17:22:34,070 | INFO     | transexitcode: 0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,070 | INFO     | exeerrorcode: 0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | exeerrordiag: 
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | exitcode: 0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | exitmsg: OK
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | cpuconsumptiontime: 31141 s
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | nevents: 400
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | neventsw: 0
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | pid: 543044
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | pgrp: 543044
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | corecount: 4
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | event service: False
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | sizes: {0: 2393479, 3: 2393741, 11: 2393769, 8027: 2421624, 8028: 2430636, 8030: 2430692, 8046: 2431014}
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | --------------------------------------------------
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | 
[2025-07-12 19:23:05] 2025-07-12 17:22:34,071 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2025-07-12 19:23:05] 2025-07-12 17:22:34,083 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,083 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,083 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,083 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,083 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,083 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,083 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,083 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,083 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,083 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,083 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,084 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,084 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,084 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,084 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,084 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,084 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,084 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-12 19:23:05] 2025-07-12 17:22:34,084 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,084 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-12 19:23:05] 2025-07-12 17:22:34,084 | INFO     | job 6720217729 has completed (purged errors)
[2025-07-12 19:23:05] 2025-07-12 17:22:34,084 | INFO     | overall cleanup function is called
[2025-07-12 19:23:05] 2025-07-12 17:22:35,091 | INFO     | --- collectZombieJob: --- 10, [543044]
[2025-07-12 19:23:05] 2025-07-12 17:22:35,091 | INFO     | zombie collector waiting for pid 543044
[2025-07-12 19:23:05] 2025-07-12 17:22:35,091 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-12 19:23:05] 2025-07-12 17:22:35,091 | INFO     | collected zombie processes
[2025-07-12 19:23:05] 2025-07-12 17:22:35,091 | INFO     | will attempt to kill all subprocesses of pid=543044
[2025-07-12 19:23:05] 2025-07-12 17:22:35,154 | INFO     | process IDs to be killed: [543044] (in reverse order)
[2025-07-12 19:23:05] 2025-07-12 17:22:35,184 | WARNING  | found no corresponding commands to process id(s)
[2025-07-12 19:23:05] 2025-07-12 17:22:35,184 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-12 19:23:05] 2025-07-12 17:22:35,186 | INFO     | did not find any defunct processes belonging to 543044
[2025-07-12 19:23:05] 2025-07-12 17:22:35,188 | INFO     | did not find any defunct processes belonging to 543044
[2025-07-12 19:23:05] 2025-07-12 17:22:35,188 | INFO     | ready for new job
[2025-07-12 19:23:05] 2025-07-12 17:22:35,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-12 19:23:05] 2025-07-12 17:22:35,189 | INFO     | ***************************************
[2025-07-12 19:23:05] 2025-07-12 17:22:35,189 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-12 19:23:05] 2025-07-12 17:22:35,189 | INFO     | ***************************************
[2025-07-12 19:23:05] 2025-07-12 17:22:35,189 | INFO     | 
[2025-07-12 19:23:05] 2025-07-12 17:22:35,190 | INFO     | architecture information:
[2025-07-12 19:23:05] 2025-07-12 17:22:35,190 | INFO     | executing command: cat /etc/os-release
[2025-07-12 19:23:05] 2025-07-12 17:22:35,199 | INFO     | cat /etc/os-release:
[2025-07-12 19:23:05] NAME="CentOS Linux"
[2025-07-12 19:23:05] VERSION="7 (Core)"
[2025-07-12 19:23:05] ID="centos"
[2025-07-12 19:23:05] ID_LIKE="rhel fedora"
[2025-07-12 19:23:05] VERSION_ID="7"
[2025-07-12 19:23:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-12 19:23:05] ANSI_COLOR="0;31"
[2025-07-12 19:23:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-12 19:23:05] HOME_URL="https://www.centos.org/"
[2025-07-12 19:23:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-12 19:23:05] 
[2025-07-12 19:23:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-12 19:23:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-12 19:23:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-12 19:23:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-12 19:23:05] 
[2025-07-12 19:23:05] 2025-07-12 17:22:35,199 | INFO     | ***************************************
[2025-07-12 19:23:05] 2025-07-12 17:22:35,702 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2025-07-12 19:23:05] 2025-07-12 17:22:35,713 | INFO     | sufficient remaining disk space (3216394682368 B)
[2025-07-12 19:23:05] 2025-07-12 17:22:35,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-12 19:23:05] 2025-07-12 17:22:35,713 | INFO     | current server update state: UPDATING_FINAL
[2025-07-12 19:23:05] 2025-07-12 17:22:35,713 | INFO     | update_server=False
[2025-07-12 19:23:05] 2025-07-12 17:22:35,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-12 19:23:05] 2025-07-12 17:22:35,714 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-12 19:23:05] 2025-07-12 17:22:36,083 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-12 19:23:05] 2025-07-12 17:22:36,083 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-12 19:23:05] 2025-07-12 17:22:36,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-12 19:23:05] 2025-07-12 17:22:36,083 | INFO     | will abort loop
[2025-07-12 19:23:05] 2025-07-12 17:22:36,128 | INFO     | all job control threads have been joined
[2025-07-12 19:23:05] 2025-07-12 17:22:36,396 | INFO     | all data control threads have been joined
[2025-07-12 19:23:05] 2025-07-12 17:22:36,577 | INFO     | all payload control threads have been joined
[2025-07-12 19:23:05] 2025-07-12 17:22:36,719 | INFO     | [job] retrieve thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:36,719 | INFO     | [job] queue monitor thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:36,770 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-12 19:23:05] 2025-07-12 17:22:37,088 | INFO     | [job] job monitor thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:37,134 | INFO     | [job] control thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:37,401 | INFO     | [data] control thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:37,442 | INFO     | [payload] validate_post thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:37,551 | INFO     | [job] validate thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:37,582 | INFO     | [payload] control thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:37,599 | INFO     | [payload] execute_payloads thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:37,721 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-12 19:23:05] 2025-07-12 17:22:37,800 | INFO     | [job] create_data_payload thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:37,848 | INFO     | [payload] validate_pre thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:37,898 | INFO     | [payload] failed_post thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:38,192 | INFO     | [data] copytool_in thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:38,775 | INFO     | [data] copytool_out thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:41,726 | INFO     | [data] queue_monitor thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:46,515 | INFO     | job.realtimelogging is not enabled
[2025-07-12 19:23:05] 2025-07-12 17:22:47,520 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-12 19:23:05] 2025-07-12 17:22:48,879 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128490536372032)>', '<ExcThread(monitor, started 128489642518272)>']
[2025-07-12 19:23:05] 2025-07-12 17:22:53,904 | INFO     | all workflow threads have been joined
[2025-07-12 19:23:05] 2025-07-12 17:22:53,904 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-12 19:23:05] 2025-07-12 17:22:53,904 | INFO     | traces error code: 0
[2025-07-12 19:23:05] 2025-07-12 17:22:53,904 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-12 19:23:05] 2025-07-12 17:23:05,294 | INFO     | PID=536412 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-12 19:23:05] 2025-07-12 17:23:05,294 | INFO     | found 0 job(s) in 20 queues
[2025-07-12 19:23:05] 2025-07-12 17:23:05,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-12 19:23:05] 2025-07-12 17:23:05,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-12 19:23:05] 2025-07-12 17:23:05,295 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-12 19:23:05] 2025-07-12 17:23:05,295 | INFO     | [monitor] control thread has ended
[2025-07-12 19:23:05] 2025-07-12 17:23:05,349 [wrapper] ==== pilot stdout END ====
[2025-07-12 19:23:05] 2025-07-12 17:23:05,351 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-12 19:23:05] 2025-07-12 17:23:05,352 [wrapper] pilotpid: 536412
[2025-07-12 19:23:05] 2025-07-12 17:23:05,354 [wrapper] Pilot exit status: 0
[2025-07-12 19:23:05] 2025-07-12 17:23:05,360 [wrapper] pandaids: 6720217729
[2025-07-12 19:23:05] 2025-07-12 17:23:05,380 [wrapper] cleanup supervisor_pilot  587382 536413
[2025-07-12 19:23:05] 2025-07-12 17:23:05,381 [wrapper] Test setup, not cleaning
[2025-07-12 19:23:05] 2025-07-12 17:23:05,383 [wrapper] apfmon messages muted
[2025-07-12 19:23:05] 2025-07-12 17:23:05,385 [wrapper] ==== wrapper stdout END ====
[2025-07-12 19:23:05] 2025-07-12 17:23:05,387 [wrapper] ==== wrapper stderr END ====
[2025-07-12 19:23:05]  *** Error codes and diagnostics ***
[2025-07-12 19:23:05]     "exeErrorCode": 0,
[2025-07-12 19:23:05]     "exeErrorDiag": "",
[2025-07-12 19:23:05]     "pilotErrorCode": 0,
[2025-07-12 19:23:05]     "pilotErrorDiag": "",
[2025-07-12 19:23:05]  *** Listing of results directory ***
[2025-07-12 19:23:05] insgesamt 605204
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc    530466 Jul  4 16:22 pilot3.tar.gz
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc      5112 Jul  4 17:02 queuedata.json
[2025-07-12 19:23:05] -rwx------ 1 boinc boinc     36292 Jul  4 17:05 runpilot2-wrapper.sh
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc       100 Jul 12 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-12 19:23:05] -rwxr-xr-x 1 boinc boinc      7986 Jul 12 17:08 run_atlas
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc       105 Jul 12 17:08 job.xml
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc      9255 Jul 12 17:08 init_data.xml
[2025-07-12 19:23:05] -rw-r--r-- 2 boinc boinc 332832222 Jul 12 17:08 EVNT.45481995._000001.pool.root.1
[2025-07-12 19:23:05] -rw-r--r-- 2 boinc boinc     15095 Jul 12 17:08 start_atlas.sh
[2025-07-12 19:23:05] drwxrwx--x 2 boinc boinc      4096 Jul 12 17:08 shared
[2025-07-12 19:23:05] -rw-r--r-- 2 boinc boinc    542869 Jul 12 17:08 input.tar.gz
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc         0 Jul 12 17:08 boinc_lockfile
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc      2522 Jul 12 17:08 pandaJob.out
[2025-07-12 19:23:05] -rw------- 1 boinc boinc    976575 Jul 12 17:08 agis_schedconf.cvmfs.json
[2025-07-12 19:23:05] -rw------- 1 boinc boinc   1588641 Jul 12 17:08 agis_ddmendpoints.agis.ALL.json
[2025-07-12 19:23:05] drwx------ 4 boinc boinc      4096 Jul 12 17:08 pilot3
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc       529 Jul 12 19:21 boinc_task_state.xml
[2025-07-12 19:23:05] -rw------- 1 boinc boinc 280911760 Jul 12 19:21 HITS.45481997._000166.pool.root.1
[2025-07-12 19:23:05] -rw------- 1 boinc boinc      1017 Jul 12 19:22 memory_monitor_summary.json
[2025-07-12 19:23:05] -rw------- 1 boinc boinc    278845 Jul 12 19:22 log.45481997._000166.job.log.tgz.1
[2025-07-12 19:23:05] -rw------- 1 boinc boinc        95 Jul 12 19:22 pilot_heartbeat.json
[2025-07-12 19:23:05] -rw------- 1 boinc boinc      7730 Jul 12 19:22 heartbeat.json
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc      8192 Jul 12 19:23 boinc_mmap_file
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc        27 Jul 12 19:23 wrapper_checkpoint.txt
[2025-07-12 19:23:05] -rw------- 1 boinc boinc       746 Jul 12 19:23 pilotlog.txt
[2025-07-12 19:23:05] -rw------- 1 boinc boinc    774933 Jul 12 19:23 log.45481997._000166.job.log.1
[2025-07-12 19:23:05] -rw------- 1 boinc boinc       357 Jul 12 19:23 output.list
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc       620 Jul 12 19:23 runtime_log
[2025-07-12 19:23:05] -rw------- 1 boinc boinc   1075200 Jul 12 19:23 result.tar.gz
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc      8688 Jul 12 19:23 runtime_log.err
[2025-07-12 19:23:05] -rw------- 1 boinc boinc       636 Jul 12 19:23 9x2NDmHAxr7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiK7KDms8QGkm.diag
[2025-07-12 19:23:05] -rw-r--r-- 1 boinc boinc     20997 Jul 12 19:23 stderr.txt
[2025-07-12 19:23:05] HITS file was successfully produced:
[2025-07-12 19:23:05] -rw------- 1 boinc boinc 280911760 Jul 12 19:21 shared/HITS.pool.root.1
[2025-07-12 19:23:05]  *** Contents of shared directory: ***
[2025-07-12 19:23:05] insgesamt 600968
[2025-07-12 19:23:05] -rw-r--r-- 2 boinc boinc 332832222 Jul 12 17:08 ATLAS.root_0
[2025-07-12 19:23:05] -rw-r--r-- 2 boinc boinc     15095 Jul 12 17:08 start_atlas.sh
[2025-07-12 19:23:05] -rw-r--r-- 2 boinc boinc    542869 Jul 12 17:08 input.tar.gz
[2025-07-12 19:23:05] -rw------- 1 boinc boinc 280911760 Jul 12 19:21 HITS.pool.root.1
[2025-07-12 19:23:05] -rw------- 1 boinc boinc   1075200 Jul 12 19:23 result.tar.gz
19:23:07 (532530): run_atlas exited; CPU time 31203.891544
19:23:07 (532530): called boinc_finish(0)

</stderr_txt>
]]>

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