Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:30:52 (2976057): wrapper (7.7.26015): starting
16:30:52 (2976057): wrapper: running run_atlas (--nthreads 8)
[2025-07-11 16:30:52] Arguments: --nthreads 8
[2025-07-11 16:30:52] Threads: 8
[2025-07-11 16:30:52] Checking for CVMFS
[2025-07-11 16:30:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-11 16:30:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-11 16:30:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-11 16:30:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-11 16:30:53] 2.12.6.0 4126064 4566 419560 148217 0 724 18546434 32935936 28977 16776704 0 30138287 99.502 65364744 35015 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-11 16:30:53] CVMFS is ok
[2025-07-11 16:30:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-11 16:30:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-11 16:30:53] Further information can be found at the LHC@home message board.
[2025-07-11 16:30:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-11 16:30:53] Checking for apptainer binary...
[2025-07-11 16:30:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-11 16:30:53] Running /usr/bin/apptainer --version
[2025-07-11 16:30:54] apptainer version 1.4.1-1.el9
[2025-07-11 16:30:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-11 16:30:54] c7-9-14.aglt2.org
[2025-07-11 16:30:54] apptainer works
[2025-07-11 16:30:54] Set ATHENA_PROC_NUMBER=8
[2025-07-11 16:30:54] Set ATHENA_CORE_NUMBER=8
[2025-07-11 16:30:54] Starting ATLAS job with PandaID=6723645889
[2025-07-11 16:30:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-11 17:49:42]  *** The last 200 lines of the pilot log: ***
[2025-07-11 17:49:42]  protocol_id=None
[2025-07-11 17:49:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-11 17:49:42]  replicas=None
[2025-07-11 17:49:42]  scope=mc23_13p6TeV
[2025-07-11 17:49:42]  status=None
[2025-07-11 17:49:42]  status_code=0
[2025-07-11 17:49:42]  storage_token=
[2025-07-11 17:49:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6723645889/log.45482148._017019.job.log.tgz.1
[2025-07-11 17:49:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/f3/log.45482148._017019.job.log.tgz.1
[2025-07-11 17:49:42]  workdir=None
[2025-07-11 17:49:42] ]
[2025-07-11 17:49:42] 2025-07-11 21:49:03,878 | INFO     | transferring file log.45482148._017019.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6723645889/log.45482148._017019.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-11 17:49:42] 2025-07-11 21:49:03,878 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6723645889/log.45482148._017019.job.log.tgz.1 /tmp/boinchome/slots/0/log.45482148._017019.job
[2025-07-11 17:49:42] 2025-07-11 21:49:03,895 | INFO     | adding to output.list: log.45482148._017019.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/76/f3/log.45482148._017019.job.log.tg
[2025-07-11 17:49:42] 2025-07-11 21:49:03,897 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-11 17:49:42] 2025-07-11 21:49:03,897 | INFO     | summary of transferred files:
[2025-07-11 17:49:42] 2025-07-11 21:49:03,897 | INFO     |  -- lfn=log.45482148._017019.job.log.tgz.1, status_code=0, status=transferred
[2025-07-11 17:49:42] 2025-07-11 21:49:03,897 | INFO     | stage-out finished correctly
[2025-07-11 17:49:42] 2025-07-11 21:49:05,106 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-11 17:49:42] 2025-07-11 21:49:05,868 | INFO     | job 6723645889 has state=finished
[2025-07-11 17:49:42] 2025-07-11 21:49:05,868 | INFO     | preparing for final server update for job 6723645889 in state='finished'
[2025-07-11 17:49:42] 2025-07-11 21:49:05,869 | INFO     | this job has now completed (state=finished)
[2025-07-11 17:49:42] 2025-07-11 21:49:05,869 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-11 17:49:42] 2025-07-11 21:49:05,869 | INFO     | log transfer has been attempted: DONE
[2025-07-11 17:49:42] 2025-07-11 21:49:05,869 | INFO     | job 6723645889 has finished - writing final server update
[2025-07-11 17:49:42] 2025-07-11 21:49:05,869 | INFO     | total number of processed events: 400 (read)
[2025-07-11 17:49:42] 2025-07-11 21:49:05,870 | INFO     | executing command: lscpu
[2025-07-11 17:49:42] 2025-07-11 21:49:05,937 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-11 17:49:42] 2025-07-11 21:49:06,788 | WARNING  | process 3000207 can no longer be monitored (due to stat problems) - aborting
[2025-07-11 17:49:42] 2025-07-11 21:49:06,789 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6723645889/memory_monitor_summary.json (trf name=prmon)
[2025-07-11 17:49:42] 2025-07-11 21:49:07,024 | INFO     | number of running child processes to parent process 3000207: 1
[2025-07-11 17:49:42] 2025-07-11 21:49:07,024 | INFO     | maximum number of monitored processes: 6
[2025-07-11 17:49:42] 2025-07-11 21:49:09,527 | INFO     | monitor loop #355: job 0:6723645889 is in state 'finished'
[2025-07-11 17:49:42] 2025-07-11 21:49:09,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-11 17:49:42] 2025-07-11 21:49:09,733 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-11 17:49:42] 2025-07-11 21:49:09,751 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3696.4358281249984
[2025-07-11 17:49:42] 2025-07-11 21:49:09,765 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6723645889/memory_monitor_summary.json (trf name=prmon)
[2025-07-11 17:49:42] 2025-07-11 21:49:09,765 | INFO     | extracted standard info from prmon json
[2025-07-11 17:49:42] 2025-07-11 21:49:09,765 | INFO     | extracted standard memory fields from prmon json
[2025-07-11 17:49:42] 2025-07-11 21:49:09,766 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-11 17:49:42] 2025-07-11 21:49:09,766 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-11 17:49:42] 2025-07-11 21:49:09,766 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-11 17:49:42] 2025-07-11 21:49:09,767 | INFO     | fitting pss+swap vs Time
[2025-07-11 17:49:42] 2025-07-11 21:49:09,767 | INFO     | sum of square deviations: 97479037.0
[2025-07-11 17:49:42] 2025-07-11 21:49:09,768 | INFO     | sum of deviations: -12769898416.999998
[2025-07-11 17:49:42] 2025-07-11 21:49:09,768 | INFO     | mean x: 1752268359.5
[2025-07-11 17:49:42] 2025-07-11 21:49:09,768 | INFO     | mean y: 2482551.5588235296
[2025-07-11 17:49:42] 2025-07-11 21:49:09,768 | INFO     | -- intersect: 229552236414.41486
[2025-07-11 17:49:42] 2025-07-11 21:49:09,768 | INFO     | intersect: 229552236414.41486
[2025-07-11 17:49:42] 2025-07-11 21:49:09,768 | INFO     | chi2: 0.21679131064307897
[2025-07-11 17:49:42] 2025-07-11 21:49:09,768 | INFO     | -- intersect: 229552236414.41486
[2025-07-11 17:49:42] 2025-07-11 21:49:09,768 | INFO     | current memory leak: -131.00 B/s (using 68 data points, chi2=0.22)
[2025-07-11 17:49:42] 2025-07-11 21:49:09,768 | INFO     | could have reported an average CPU frequency of 3704 MHz (6 samples)
[2025-07-11 17:49:42] 2025-07-11 21:49:09,768 | INFO     | ..............................
[2025-07-11 17:49:42] 2025-07-11 21:49:09,769 | INFO     | . Timing measurements:
[2025-07-11 17:49:42] 2025-07-11 21:49:09,769 | INFO     | . get job = 0 s
[2025-07-11 17:49:42] 2025-07-11 21:49:09,769 | INFO     | . initial setup = 3 s
[2025-07-11 17:49:42] 2025-07-11 21:49:09,769 | INFO     | . payload setup = 35 s
[2025-07-11 17:49:42] 2025-07-11 21:49:09,769 | INFO     | . stage-in = 0 s
[2025-07-11 17:49:42] 2025-07-11 21:49:09,769 | INFO     | . payload execution = 4547 s
[2025-07-11 17:49:42] 2025-07-11 21:49:09,769 | INFO     | . stage-out = 0 s
[2025-07-11 17:49:42] 2025-07-11 21:49:09,769 | INFO     | . log creation = 0 s
[2025-07-11 17:49:42] 2025-07-11 21:49:09,769 | INFO     | ..............................
[2025-07-11 17:49:42] 2025-07-11 21:49:09,823 | INFO     | 
[2025-07-11 17:49:42] 2025-07-11 21:49:09,823 | INFO     | job summary report
[2025-07-11 17:49:42] 2025-07-11 21:49:09,823 | INFO     | --------------------------------------------------
[2025-07-11 17:49:42] 2025-07-11 21:49:09,823 | INFO     | PanDA job id: 6723645889
[2025-07-11 17:49:42] 2025-07-11 21:49:09,823 | INFO     | task id: 45482148
[2025-07-11 17:49:42] 2025-07-11 21:49:09,823 | INFO     | errors: (none)
[2025-07-11 17:49:42] 2025-07-11 21:49:09,823 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-11 17:49:42] 2025-07-11 21:49:09,823 | INFO     | pilot state: finished 
[2025-07-11 17:49:42] 2025-07-11 21:49:09,823 | INFO     | transexitcode: 0
[2025-07-11 17:49:42] 2025-07-11 21:49:09,823 | INFO     | exeerrorcode: 0
[2025-07-11 17:49:42] 2025-07-11 21:49:09,823 | INFO     | exeerrordiag: 
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | exitcode: 0
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | exitmsg: OK
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | cpuconsumptiontime: 32918 s
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | nevents: 400
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | neventsw: 0
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | pid: 3000207
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | pgrp: 3000207
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | corecount: 8
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | event service: False
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | sizes: {0: 2392694, 1: 2393550, 2: 2393550, 12: 2393578, 23: 2393606, 24: 2393896, 33: 2394052, 4586: 2420213, 4587: 2420212, 4588: 2429266, 4589: 2429322, 4594: 2
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | --------------------------------------------------
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | 
[2025-07-11 17:49:42] 2025-07-11 21:49:09,824 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,838 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,839 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,839 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,839 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,839 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,839 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-11 17:49:42] 2025-07-11 21:49:09,839 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,839 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-11 17:49:42] 2025-07-11 21:49:09,839 | INFO     | job 6723645889 has completed (purged errors)
[2025-07-11 17:49:42] 2025-07-11 21:49:09,839 | INFO     | overall cleanup function is called
[2025-07-11 17:49:42] 2025-07-11 21:49:10,847 | INFO     | --- collectZombieJob: --- 10, [3000207]
[2025-07-11 17:49:42] 2025-07-11 21:49:10,848 | INFO     | zombie collector waiting for pid 3000207
[2025-07-11 17:49:42] 2025-07-11 21:49:10,848 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-11 17:49:42] 2025-07-11 21:49:10,848 | INFO     | collected zombie processes
[2025-07-11 17:49:42] 2025-07-11 21:49:10,848 | INFO     | will attempt to kill all subprocesses of pid=3000207
[2025-07-11 17:49:42] 2025-07-11 21:49:11,178 | INFO     | process IDs to be killed: [3000207] (in reverse order)
[2025-07-11 17:49:42] 2025-07-11 21:49:11,310 | WARNING  | found no corresponding commands to process id(s)
[2025-07-11 17:49:42] 2025-07-11 21:49:11,311 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-11 17:49:42] 2025-07-11 21:49:11,328 | INFO     | did not find any defunct processes belonging to 3000207
[2025-07-11 17:49:42] 2025-07-11 21:49:11,342 | INFO     | did not find any defunct processes belonging to 3000207
[2025-07-11 17:49:42] 2025-07-11 21:49:11,343 | INFO     | ready for new job
[2025-07-11 17:49:42] 2025-07-11 21:49:11,343 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-11 17:49:42] 2025-07-11 21:49:11,345 | INFO     | ***************************************
[2025-07-11 17:49:42] 2025-07-11 21:49:11,345 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-11 17:49:42] 2025-07-11 21:49:11,345 | INFO     | ***************************************
[2025-07-11 17:49:42] 2025-07-11 21:49:11,345 | INFO     | 
[2025-07-11 17:49:42] 2025-07-11 21:49:11,363 | INFO     | architecture information:
[2025-07-11 17:49:42] 2025-07-11 21:49:11,363 | INFO     | executing command: cat /etc/os-release
[2025-07-11 17:49:42] 2025-07-11 21:49:11,382 | INFO     | cat /etc/os-release:
[2025-07-11 17:49:42] NAME="CentOS Linux"
[2025-07-11 17:49:42] VERSION="7 (Core)"
[2025-07-11 17:49:42] ID="centos"
[2025-07-11 17:49:42] ID_LIKE="rhel fedora"
[2025-07-11 17:49:42] VERSION_ID="7"
[2025-07-11 17:49:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-11 17:49:42] ANSI_COLOR="0;31"
[2025-07-11 17:49:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-11 17:49:42] HOME_URL="https://www.centos.org/"
[2025-07-11 17:49:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-11 17:49:42] 
[2025-07-11 17:49:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-11 17:49:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-11 17:49:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-11 17:49:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-11 17:49:42] 
[2025-07-11 17:49:42] 2025-07-11 21:49:11,383 | INFO     | ***************************************
[2025-07-11 17:49:42] 2025-07-11 21:49:11,885 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-11 17:49:42] 2025-07-11 21:49:11,902 | INFO     | sufficient remaining disk space (76338429952 B)
[2025-07-11 17:49:42] 2025-07-11 21:49:11,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-11 17:49:42] 2025-07-11 21:49:11,902 | INFO     | current server update state: UPDATING_FINAL
[2025-07-11 17:49:42] 2025-07-11 21:49:11,902 | INFO     | update_server=False
[2025-07-11 17:49:42] 2025-07-11 21:49:11,902 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-11 17:49:42] 2025-07-11 21:49:11,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-11 17:49:42] 2025-07-11 21:49:11,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-11 17:49:42] 2025-07-11 21:49:12,029 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-11 17:49:42] 2025-07-11 21:49:12,030 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-11 17:49:42] 2025-07-11 21:49:12,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-11 17:49:42] 2025-07-11 21:49:12,030 | INFO     | will abort loop
[2025-07-11 17:49:42] 2025-07-11 21:49:12,126 | INFO     | all data control threads have been joined
[2025-07-11 17:49:42] 2025-07-11 21:49:12,908 | INFO     | [job] retrieve thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:13,035 | INFO     | [job] job monitor thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:13,132 | INFO     | [data] control thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:13,179 | INFO     | [payload] validate_post thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:13,234 | INFO     | all job control threads have been joined
[2025-07-11 17:49:42] 2025-07-11 21:49:13,336 | INFO     | all payload control threads have been joined
[2025-07-11 17:49:42] 2025-07-11 21:49:13,491 | INFO     | [data] copytool_in thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:13,594 | INFO     | [payload] execute_payloads thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:13,857 | INFO     | [job] validate thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:13,951 | INFO     | [data] copytool_out thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:14,025 | INFO     | [payload] failed_post thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:14,107 | INFO     | [job] create_data_payload thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:14,239 | INFO     | [job] control thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:14,258 | INFO     | [payload] validate_pre thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:14,342 | INFO     | [payload] control thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:14,834 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-11 17:49:42] 2025-07-11 21:49:15,839 | INFO     | [job] queue monitor thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:15,909 | INFO     | [data] queue_monitor thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:22,007 | INFO     | job.realtimelogging is not enabled
[2025-07-11 17:49:42] 2025-07-11 21:49:23,012 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-11 17:49:42] 2025-07-11 21:49:23,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140160285366080)>', '<ExcThread(monitor, started 140159269988096)>']
[2025-07-11 17:49:42] 2025-07-11 21:49:28,359 | INFO     | all workflow threads have been joined
[2025-07-11 17:49:42] 2025-07-11 21:49:28,360 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-11 17:49:42] 2025-07-11 21:49:28,360 | INFO     | traces error code: 0
[2025-07-11 17:49:42] 2025-07-11 21:49:28,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-11 17:49:42] 2025-07-11 21:49:42,508 | INFO     | PID=2981647 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-11 17:49:42] 2025-07-11 21:49:42,509 | INFO     | .. there are 36 such processes running
[2025-07-11 17:49:42] 2025-07-11 21:49:42,510 | INFO     | found 0 job(s) in 20 queues
[2025-07-11 17:49:42] 2025-07-11 21:49:42,511 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-11 17:49:42] 2025-07-11 21:49:42,511 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-11 17:49:42] 2025-07-11 21:49:42,511 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-11 17:49:42] 2025-07-11 21:49:42,511 | INFO     | [monitor] control thread has ended
[2025-07-11 17:49:42] 2025-07-11 21:49:42,675 [wrapper] ==== pilot stdout END ====
[2025-07-11 17:49:42] 2025-07-11 21:49:42,677 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-11 17:49:42] 2025-07-11 21:49:42,680 [wrapper] pilotpid: 2981647
[2025-07-11 17:49:42] 2025-07-11 21:49:42,682 [wrapper] Pilot exit status: 0
[2025-07-11 17:49:42] 2025-07-11 21:49:42,693 [wrapper] pandaids: 6723645889
[2025-07-11 17:49:42] 2025-07-11 21:49:42,790 [wrapper] cleanup supervisor_pilot 3560813 2981648
[2025-07-11 17:49:42] 2025-07-11 21:49:42,794 [wrapper] Test setup, not cleaning
[2025-07-11 17:49:42] 2025-07-11 21:49:42,797 [wrapper] apfmon messages muted
[2025-07-11 17:49:42] 2025-07-11 21:49:42,800 [wrapper] ==== wrapper stdout END ====
[2025-07-11 17:49:42] 2025-07-11 21:49:42,803 [wrapper] ==== wrapper stderr END ====
[2025-07-11 17:49:42]  *** Error codes and diagnostics ***
[2025-07-11 17:49:42]     "exeErrorCode": 0,
[2025-07-11 17:49:42]     "exeErrorDiag": "",
[2025-07-11 17:49:42]     "pilotErrorCode": 0,
[2025-07-11 17:49:42]     "pilotErrorDiag": "",
[2025-07-11 17:49:42]  *** Listing of results directory ***
[2025-07-11 17:49:42] total 581316
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas      5112 Jul  7 06:57 queuedata.json
[2025-07-11 17:49:42] -rwx------. 1 boincer umatlas     36292 Jul  7 06:57 runpilot2-wrapper.sh
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas    530466 Jul  7 06:57 pilot3.tar.gz
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas       100 Jul 11 16:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-11 17:49:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 11 16:30 run_atlas
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas       105 Jul 11 16:30 job.xml
[2025-07-11 17:49:42] -rw-r--r--. 2 boincer umatlas 319807665 Jul 11 16:30 EVNT.45482146._000349.pool.root.1
[2025-07-11 17:49:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 11 16:30 start_atlas.sh
[2025-07-11 17:49:42] drwxrwx--x. 2 boincer umatlas      4096 Jul 11 16:30 shared
[2025-07-11 17:49:42] -rw-r--r--. 2 boincer umatlas    542909 Jul 11 16:30 input.tar.gz
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas         0 Jul 11 16:30 boinc_lockfile
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas      2615 Jul 11 16:30 pandaJob.out
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas    976207 Jul 11 16:31 agis_schedconf.cvmfs.json
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas   1588641 Jul 11 16:31 agis_ddmendpoints.agis.ALL.json
[2025-07-11 17:49:42] drwx------. 4 boincer umatlas      4096 Jul 11 16:31 pilot3
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas       530 Jul 11 17:48 boinc_task_state.xml
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas 270067977 Jul 11 17:48 HITS.45482148._017019.pool.root.1
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas      1037 Jul 11 17:48 memory_monitor_summary.json
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas    302423 Jul 11 17:49 log.45482148._017019.job.log.tgz.1
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas      7782 Jul 11 17:49 heartbeat.json
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas      7160 Jul 11 17:49 init_data.xml
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas      8192 Jul 11 17:49 boinc_mmap_file
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas        27 Jul 11 17:49 wrapper_checkpoint.txt
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas        95 Jul 11 17:49 pilot_heartbeat.json
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas       823 Jul 11 17:49 pilotlog.txt
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas    460202 Jul 11 17:49 log.45482148._017019.job.log.1
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas       357 Jul 11 17:49 output.list
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas       620 Jul 11 17:49 runtime_log
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas    778240 Jul 11 17:49 result.tar.gz
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas       652 Jul 11 17:49 TSbNDmBiys7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmSsKDmPcUAWo.diag
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas      8655 Jul 11 17:49 runtime_log.err
[2025-07-11 17:49:42] -rw-r--r--. 1 boincer umatlas     21865 Jul 11 17:49 stderr.txt
[2025-07-11 17:49:42] HITS file was successfully produced:
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas 270067977 Jul 11 17:48 shared/HITS.pool.root.1
[2025-07-11 17:49:42]  *** Contents of shared directory: ***
[2025-07-11 17:49:42] total 577372
[2025-07-11 17:49:42] -rw-r--r--. 2 boincer umatlas 319807665 Jul 11 16:30 ATLAS.root_0
[2025-07-11 17:49:42] -rw-r--r--. 2 boincer umatlas     15095 Jul 11 16:30 start_atlas.sh
[2025-07-11 17:49:42] -rw-r--r--. 2 boincer umatlas    542909 Jul 11 16:30 input.tar.gz
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas 270067977 Jul 11 17:48 HITS.pool.root.1
[2025-07-11 17:49:42] -rw-------. 1 boincer umatlas    778240 Jul 11 17:49 result.tar.gz
17:50:05 (2976057): run_atlas exited; CPU time 32983.522598
17:50:05 (2976057): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN