Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:31:29 (3609614): wrapper (7.7.26015): starting
13:31:29 (3609614): wrapper: running run_atlas (--nthreads 8)
[2025-07-11 13:31:29] Arguments: --nthreads 8
[2025-07-11 13:31:29] Threads: 8
[2025-07-11 13:31:29] Checking for CVMFS
[2025-07-11 13:31:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-11 13:31:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-11 13:31:29] Running cvmfs_config stat atlas.cern.ch
[2025-07-11 13:31:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-11 13:31:30] 2.13.0.0 113626 4495 143760 148209 2 123 25299935 32503808 33547 16776704 0 37242043 99.426 67395102 34264 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-11 13:31:30] CVMFS is ok
[2025-07-11 13:31:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-11 13:31:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-11 13:31:30] Further information can be found at the LHC@home message board.
[2025-07-11 13:31:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-11 13:31:30] Checking for apptainer binary...
[2025-07-11 13:31:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-11 13:31:30] Running /usr/bin/apptainer --version
[2025-07-11 13:31:30] apptainer version 1.4.1-1.el9
[2025-07-11 13:31:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-11 13:31:30] c8-7-1.aglt2.org
[2025-07-11 13:31:30] apptainer works
[2025-07-11 13:31:30] Set ATHENA_PROC_NUMBER=8
[2025-07-11 13:31:30] Set ATHENA_CORE_NUMBER=8
[2025-07-11 13:31:30] Starting ATLAS job with PandaID=6721163574
[2025-07-11 13:31:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-11 15:06:02]  *** The last 200 lines of the pilot log: ***
[2025-07-11 15:06:02]  status=None
[2025-07-11 15:06:02]  status_code=0
[2025-07-11 15:06:02]  storage_token=
[2025-07-11 15:06:02]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6721163574/log.45482062._014023.job.log.tgz.1
[2025-07-11 15:06:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/02/log.45482062._014023.job.log.tgz.1
[2025-07-11 15:06:02]  workdir=None
[2025-07-11 15:06:02] ]
[2025-07-11 15:06:02] 2025-07-11 19:05:20,172 | INFO     | transferring file log.45482062._014023.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6721163574/log.45482062._014023.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-11 15:06:02] 2025-07-11 19:05:20,172 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6721163574/log.45482062._014023.job.log.tgz.1 /tmp/boinchome/slots/1/log.45482062._014023.job
[2025-07-11 15:06:02] 2025-07-11 19:05:20,191 | INFO     | adding to output.list: log.45482062._014023.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/02/log.45482062._014023.job.log.tg
[2025-07-11 15:06:02] 2025-07-11 19:05:20,192 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-11 15:06:02] 2025-07-11 19:05:20,192 | INFO     | summary of transferred files:
[2025-07-11 15:06:02] 2025-07-11 19:05:20,192 | INFO     |  -- lfn=log.45482062._014023.job.log.tgz.1, status_code=0, status=transferred
[2025-07-11 15:06:02] 2025-07-11 19:05:20,193 | INFO     | stage-out finished correctly
[2025-07-11 15:06:02] 2025-07-11 19:05:20,259 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-11 15:06:02] 2025-07-11 19:05:21,710 | INFO     | job 6721163574 has state=finished
[2025-07-11 15:06:02] 2025-07-11 19:05:21,710 | INFO     | preparing for final server update for job 6721163574 in state='finished'
[2025-07-11 15:06:02] 2025-07-11 19:05:21,711 | INFO     | this job has now completed (state=finished)
[2025-07-11 15:06:02] 2025-07-11 19:05:21,712 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-11 15:06:02] 2025-07-11 19:05:21,712 | INFO     | log transfer has been attempted: DONE
[2025-07-11 15:06:02] 2025-07-11 19:05:21,712 | INFO     | job 6721163574 has finished - writing final server update
[2025-07-11 15:06:02] 2025-07-11 19:05:21,713 | INFO     | total number of processed events: 400 (read)
[2025-07-11 15:06:02] 2025-07-11 19:05:21,714 | INFO     | executing command: lscpu
[2025-07-11 15:06:02] 2025-07-11 19:05:21,793 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-11 15:06:02] 2025-07-11 19:05:22,070 | WARNING  | process 3631955 can no longer be monitored (due to stat problems) - aborting
[2025-07-11 15:06:02] 2025-07-11 19:05:22,070 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6721163574/memory_monitor_summary.json (trf name=prmon)
[2025-07-11 15:06:02] 2025-07-11 19:05:22,636 | INFO     | number of running child processes to parent process 3631955: 1
[2025-07-11 15:06:02] 2025-07-11 19:05:22,637 | INFO     | maximum number of monitored processes: 6
[2025-07-11 15:06:02] 2025-07-11 19:05:25,163 | INFO     | monitor loop #380: job 0:6721163574 is in state 'finished'
[2025-07-11 15:06:02] 2025-07-11 19:05:25,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-11 15:06:02] 2025-07-11 19:05:25,197 | INFO     | PID=3617903 has CPU usage=14.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-11 15:06:02] 2025-07-11 19:05:25,197 | INFO     | .. there are 51 such processes running
[2025-07-11 15:06:02] 2025-07-11 19:05:27,670 | INFO     | monitor loop #381: job 0:6721163574 is in state 'finished'
[2025-07-11 15:06:02] 2025-07-11 19:05:27,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-11 15:06:02] 2025-07-11 19:05:29,816 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-11 15:06:02] 2025-07-11 19:05:29,823 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3747.669624999999
[2025-07-11 15:06:02] 2025-07-11 19:05:29,836 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6721163574/memory_monitor_summary.json (trf name=prmon)
[2025-07-11 15:06:02] 2025-07-11 19:05:29,836 | INFO     | extracted standard info from prmon json
[2025-07-11 15:06:02] 2025-07-11 19:05:29,836 | INFO     | extracted standard memory fields from prmon json
[2025-07-11 15:06:02] 2025-07-11 19:05:29,836 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-11 15:06:02] 2025-07-11 19:05:29,836 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-11 15:06:02] 2025-07-11 19:05:29,836 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-11 15:06:02] 2025-07-11 19:05:29,837 | INFO     | fitting pss+swap vs Time
[2025-07-11 15:06:02] 2025-07-11 19:05:29,838 | INFO     | sum of square deviations: 177276858.98795226
[2025-07-11 15:06:02] 2025-07-11 19:05:29,838 | INFO     | sum of deviations: -11561690490.144577
[2025-07-11 15:06:02] 2025-07-11 19:05:29,838 | INFO     | mean x: 1752258048.0120482
[2025-07-11 15:06:02] 2025-07-11 19:05:29,838 | INFO     | mean y: 2622679.1445783135
[2025-07-11 15:06:02] 2025-07-11 19:05:29,838 | INFO     | -- intersect: 114281865472.79654
[2025-07-11 15:06:02] 2025-07-11 19:05:29,838 | INFO     | intersect: 114281865472.79654
[2025-07-11 15:06:02] 2025-07-11 19:05:29,838 | INFO     | chi2: 0.15883694548361482
[2025-07-11 15:06:02] 2025-07-11 19:05:29,838 | INFO     | -- intersect: 114281865472.79654
[2025-07-11 15:06:02] 2025-07-11 19:05:29,838 | INFO     | current memory leak: -65.22 B/s (using 83 data points, chi2=0.16)
[2025-07-11 15:06:02] 2025-07-11 19:05:29,838 | INFO     | could have reported an average CPU frequency of 3718 MHz (7 samples)
[2025-07-11 15:06:02] 2025-07-11 19:05:29,839 | INFO     | ..............................
[2025-07-11 15:06:02] 2025-07-11 19:05:29,839 | INFO     | . Timing measurements:
[2025-07-11 15:06:02] 2025-07-11 19:05:29,839 | INFO     | . get job = 0 s
[2025-07-11 15:06:02] 2025-07-11 19:05:29,839 | INFO     | . initial setup = 5 s
[2025-07-11 15:06:02] 2025-07-11 19:05:29,839 | INFO     | . payload setup = 37 s
[2025-07-11 15:06:02] 2025-07-11 19:05:29,839 | INFO     | . stage-in = 0 s
[2025-07-11 15:06:02] 2025-07-11 19:05:29,839 | INFO     | . payload execution = 5491 s
[2025-07-11 15:06:02] 2025-07-11 19:05:29,839 | INFO     | . stage-out = 0 s
[2025-07-11 15:06:02] 2025-07-11 19:05:29,839 | INFO     | . log creation = 0 s
[2025-07-11 15:06:02] 2025-07-11 19:05:29,839 | INFO     | ..............................
[2025-07-11 15:06:02] 2025-07-11 19:05:30,179 | INFO     | 
[2025-07-11 15:06:02] 2025-07-11 19:05:30,179 | INFO     | job summary report
[2025-07-11 15:06:02] 2025-07-11 19:05:30,179 | INFO     | --------------------------------------------------
[2025-07-11 15:06:02] 2025-07-11 19:05:30,179 | INFO     | PanDA job id: 6721163574
[2025-07-11 15:06:02] 2025-07-11 19:05:30,179 | INFO     | task id: 45482062
[2025-07-11 15:06:02] 2025-07-11 19:05:30,179 | INFO     | errors: (none)
[2025-07-11 15:06:02] 2025-07-11 19:05:30,179 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-11 15:06:02] 2025-07-11 19:05:30,179 | INFO     | pilot state: finished 
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | transexitcode: 0
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | exeerrorcode: 0
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | exeerrordiag: 
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | exitcode: 0
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | exitmsg: OK
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | cpuconsumptiontime: 35552 s
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | nevents: 400
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | neventsw: 0
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | pid: 3631955
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | pgrp: 3631955
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | corecount: 8
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | event service: False
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | sizes: {0: 2392665, 1: 2393521, 12: 2393521, 23: 2393839, 5532: 2420448, 5534: 2429630, 5544: 2429768}
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | --------------------------------------------------
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | 
[2025-07-11 15:06:02] 2025-07-11 19:05:30,180 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-11 15:06:02] 2025-07-11 19:05:30,196 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,196 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,196 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,196 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,196 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,196 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,196 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | job 6721163574 has completed (purged errors)
[2025-07-11 15:06:02] 2025-07-11 19:05:30,197 | INFO     | overall cleanup function is called
[2025-07-11 15:06:02] 2025-07-11 19:05:31,206 | INFO     | --- collectZombieJob: --- 10, [3631955]
[2025-07-11 15:06:02] 2025-07-11 19:05:31,206 | INFO     | zombie collector waiting for pid 3631955
[2025-07-11 15:06:02] 2025-07-11 19:05:31,206 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-11 15:06:02] 2025-07-11 19:05:31,206 | INFO     | collected zombie processes
[2025-07-11 15:06:02] 2025-07-11 19:05:31,206 | INFO     | will attempt to kill all subprocesses of pid=3631955
[2025-07-11 15:06:02] 2025-07-11 19:05:31,741 | INFO     | process IDs to be killed: [3631955] (in reverse order)
[2025-07-11 15:06:02] 2025-07-11 19:05:31,922 | WARNING  | found no corresponding commands to process id(s)
[2025-07-11 15:06:02] 2025-07-11 19:05:31,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-11 15:06:02] 2025-07-11 19:05:31,946 | INFO     | did not find any defunct processes belonging to 3631955
[2025-07-11 15:06:02] 2025-07-11 19:05:31,970 | INFO     | did not find any defunct processes belonging to 3631955
[2025-07-11 15:06:02] 2025-07-11 19:05:31,970 | INFO     | ready for new job
[2025-07-11 15:06:02] 2025-07-11 19:05:31,970 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-11 15:06:02] 2025-07-11 19:05:31,971 | INFO     | ***************************************
[2025-07-11 15:06:02] 2025-07-11 19:05:31,971 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-11 15:06:02] 2025-07-11 19:05:31,971 | INFO     | ***************************************
[2025-07-11 15:06:02] 2025-07-11 19:05:31,971 | INFO     | 
[2025-07-11 15:06:02] 2025-07-11 19:05:31,987 | INFO     | architecture information:
[2025-07-11 15:06:02] 2025-07-11 19:05:31,987 | INFO     | executing command: cat /etc/os-release
[2025-07-11 15:06:02] 2025-07-11 19:05:32,001 | INFO     | cat /etc/os-release:
[2025-07-11 15:06:02] NAME="CentOS Linux"
[2025-07-11 15:06:02] VERSION="7 (Core)"
[2025-07-11 15:06:02] ID="centos"
[2025-07-11 15:06:02] ID_LIKE="rhel fedora"
[2025-07-11 15:06:02] VERSION_ID="7"
[2025-07-11 15:06:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-11 15:06:02] ANSI_COLOR="0;31"
[2025-07-11 15:06:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-11 15:06:02] HOME_URL="https://www.centos.org/"
[2025-07-11 15:06:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-11 15:06:02] 
[2025-07-11 15:06:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-11 15:06:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-11 15:06:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-11 15:06:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-11 15:06:02] 
[2025-07-11 15:06:02] 2025-07-11 19:05:32,001 | INFO     | ***************************************
[2025-07-11 15:06:02] 2025-07-11 19:05:32,505 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-11 15:06:02] 2025-07-11 19:05:32,536 | INFO     | sufficient remaining disk space (95490670592 B)
[2025-07-11 15:06:02] 2025-07-11 19:05:32,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-11 15:06:02] 2025-07-11 19:05:32,536 | INFO     | current server update state: UPDATING_FINAL
[2025-07-11 15:06:02] 2025-07-11 19:05:32,536 | INFO     | update_server=False
[2025-07-11 15:06:02] 2025-07-11 19:05:32,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-11 15:06:02] 2025-07-11 19:05:32,550 | INFO     | all payload control threads have been joined
[2025-07-11 15:06:02] 2025-07-11 19:05:32,677 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-11 15:06:02] 2025-07-11 19:05:32,678 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-11 15:06:02] 2025-07-11 19:05:32,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-11 15:06:02] 2025-07-11 19:05:32,678 | INFO     | will abort loop
[2025-07-11 15:06:02] 2025-07-11 19:05:32,761 | INFO     | all data control threads have been joined
[2025-07-11 15:06:02] 2025-07-11 19:05:33,281 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-11 15:06:02] 2025-07-11 19:05:33,542 | INFO     | [job] retrieve thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:33,556 | INFO     | [payload] control thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:33,617 | INFO     | [job] create_data_payload thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:33,671 | INFO     | [payload] validate_post thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:33,686 | INFO     | [job] job monitor thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:33,723 | INFO     | [payload] execute_payloads thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:33,767 | INFO     | [data] control thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:33,907 | INFO     | [payload] validate_pre thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:34,196 | INFO     | all job control threads have been joined
[2025-07-11 15:06:02] 2025-07-11 19:05:34,350 | INFO     | [data] copytool_in thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:34,851 | INFO     | [payload] failed_post thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:34,910 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-11 15:06:02] 2025-07-11 19:05:34,963 | INFO     | [job] validate thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:35,202 | INFO     | [job] control thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:35,287 | INFO     | [data] copytool_out thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:35,364 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-11 15:06:02] 2025-07-11 19:05:35,915 | INFO     | [job] queue monitor thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:39,372 | INFO     | [data] queue_monitor thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:42,716 | INFO     | job.realtimelogging is not enabled
[2025-07-11 15:06:02] 2025-07-11 19:05:43,721 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-11 15:06:02] 2025-07-11 19:05:44,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140477665048384)>', '<ExcThread(monitor, started 140476996888320)>']
[2025-07-11 15:06:02] 2025-07-11 19:05:49,817 | INFO     | all workflow threads have been joined
[2025-07-11 15:06:02] 2025-07-11 19:05:49,817 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-11 15:06:02] 2025-07-11 19:05:49,817 | INFO     | traces error code: 0
[2025-07-11 15:06:02] 2025-07-11 19:05:49,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-11 15:06:02] 2025-07-11 19:06:02,061 | INFO     | PID=3617903 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-11 15:06:02] 2025-07-11 19:06:02,061 | INFO     | .. there are 51 such processes running
[2025-07-11 15:06:02] 2025-07-11 19:06:02,062 | INFO     | found 0 job(s) in 20 queues
[2025-07-11 15:06:02] 2025-07-11 19:06:02,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-11 15:06:02] 2025-07-11 19:06:02,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-11 15:06:02] 2025-07-11 19:06:02,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-11 15:06:02] 2025-07-11 19:06:02,066 | INFO     | [monitor] control thread has ended
[2025-07-11 15:06:02] 2025-07-11 19:06:02,310 [wrapper] ==== pilot stdout END ====
[2025-07-11 15:06:02] 2025-07-11 19:06:02,315 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-11 15:06:02] 2025-07-11 19:06:02,336 [wrapper] pilotpid: 3617903
[2025-07-11 15:06:02] 2025-07-11 19:06:02,351 [wrapper] Pilot exit status: 0
[2025-07-11 15:06:02] 2025-07-11 19:06:02,384 [wrapper] pandaids: 6721163574
[2025-07-11 15:06:02] 2025-07-11 19:06:02,534 [wrapper] cleanup supervisor_pilot 4153599 3617904
[2025-07-11 15:06:02] 2025-07-11 19:06:02,540 [wrapper] Test setup, not cleaning
[2025-07-11 15:06:02] 2025-07-11 19:06:02,555 [wrapper] apfmon messages muted
[2025-07-11 15:06:02] 2025-07-11 19:06:02,571 [wrapper] ==== wrapper stdout END ====
[2025-07-11 15:06:02] 2025-07-11 19:06:02,578 [wrapper] ==== wrapper stderr END ====
[2025-07-11 15:06:02]  *** Error codes and diagnostics ***
[2025-07-11 15:06:02]     "exeErrorCode": 0,
[2025-07-11 15:06:02]     "exeErrorDiag": "",
[2025-07-11 15:06:02]     "pilotErrorCode": 0,
[2025-07-11 15:06:02]     "pilotErrorDiag": "",
[2025-07-11 15:06:02]  *** Listing of results directory ***
[2025-07-11 15:06:02] total 575344
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas    530466 Jul  6 22:03 pilot3.tar.gz
[2025-07-11 15:06:02] -rwx------. 1 boincer umatlas     36292 Jul  6 22:08 runpilot2-wrapper.sh
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas      5112 Jul  6 22:08 queuedata.json
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas       100 Jul 11 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-11 15:06:02] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 11 13:31 run_atlas
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas       105 Jul 11 13:31 job.xml
[2025-07-11 15:06:02] -rw-r--r--. 2 boincer umatlas 320447338 Jul 11 13:31 EVNT.45482060._000561.pool.root.1
[2025-07-11 15:06:02] -rw-r--r--. 2 boincer umatlas     15095 Jul 11 13:31 start_atlas.sh
[2025-07-11 15:06:02] drwxrwx--x. 2 boincer umatlas      4096 Jul 11 13:31 shared
[2025-07-11 15:06:02] -rw-r--r--. 2 boincer umatlas    542881 Jul 11 13:31 input.tar.gz
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas         0 Jul 11 13:31 boinc_lockfile
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas      2534 Jul 11 13:31 pandaJob.out
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas    976223 Jul 11 13:32 agis_schedconf.cvmfs.json
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas   1588641 Jul 11 13:32 agis_ddmendpoints.agis.ALL.json
[2025-07-11 15:06:02] drwx------. 4 boincer umatlas      4096 Jul 11 13:32 pilot3
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas      7157 Jul 11 15:00 init_data.xml
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas 263188612 Jul 11 15:04 HITS.45482062._014023.pool.root.1
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas       530 Jul 11 15:04 boinc_task_state.xml
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas      1034 Jul 11 15:05 memory_monitor_summary.json
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas    305838 Jul 11 15:05 log.45482062._014023.job.log.tgz.1
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas      7774 Jul 11 15:05 heartbeat.json
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas      8192 Jul 11 15:06 boinc_mmap_file
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas        95 Jul 11 15:06 pilot_heartbeat.json
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas       823 Jul 11 15:06 pilotlog.txt
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas        27 Jul 11 15:06 wrapper_checkpoint.txt
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas    517777 Jul 11 15:06 log.45482062._014023.job.log.1
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas       357 Jul 11 15:06 output.list
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas       620 Jul 11 15:06 runtime_log
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas    839680 Jul 11 15:06 result.tar.gz
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas      8650 Jul 11 15:06 runtime_log.err
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas       651 Jul 11 15:06 FGSLDmXSqs7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIarKDmpvy0jm.diag
[2025-07-11 15:06:02] -rw-r--r--. 1 boincer umatlas     22122 Jul 11 15:06 stderr.txt
[2025-07-11 15:06:02] HITS file was successfully produced:
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas 263188612 Jul 11 15:04 shared/HITS.pool.root.1
[2025-07-11 15:06:02]  *** Contents of shared directory: ***
[2025-07-11 15:06:02] total 571340
[2025-07-11 15:06:02] -rw-r--r--. 2 boincer umatlas 320447338 Jul 11 13:31 ATLAS.root_0
[2025-07-11 15:06:02] -rw-r--r--. 2 boincer umatlas     15095 Jul 11 13:31 start_atlas.sh
[2025-07-11 15:06:02] -rw-r--r--. 2 boincer umatlas    542881 Jul 11 13:31 input.tar.gz
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas 263188612 Jul 11 15:04 HITS.pool.root.1
[2025-07-11 15:06:02] -rw-------. 1 boincer umatlas    839680 Jul 11 15:06 result.tar.gz
15:06:04 (3609614): run_atlas exited; CPU time 35695.138966
15:06:04 (3609614): called boinc_finish(0)

</stderr_txt>
]]>

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