Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:47:26 (952946): wrapper (7.7.26015): starting
05:47:26 (952946): wrapper: running run_atlas (--nthreads 12)
[2025-07-07 05:47:26] Arguments: --nthreads 12
[2025-07-07 05:47:26] Threads: 12
[2025-07-07 05:47:26] Checking for CVMFS
[2025-07-07 05:47:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-07 05:47:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-07 05:47:27] Running cvmfs_config stat atlas.cern.ch
[2025-07-07 05:47:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-07 05:47:28] 2.11.5.0 7995 8263 237764 148039 1 793 25040323 45568001 16262 130560 0 61425759 99.741 43678365 27632 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-07 05:47:28] CVMFS is ok
[2025-07-07 05:47:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-07 05:47:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-07 05:47:28] Further information can be found at the LHC@home message board.
[2025-07-07 05:47:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-07 05:47:28] Checking for apptainer binary...
[2025-07-07 05:47:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-07 05:47:28] Running /usr/bin/apptainer --version
[2025-07-07 05:47:28] apptainer version 1.4.1-1.el9
[2025-07-07 05:47:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-07 05:47:28] wns0139.triumf.lcg
[2025-07-07 05:47:28] apptainer works
[2025-07-07 05:47:28] Set ATHENA_PROC_NUMBER=12
[2025-07-07 05:47:28] Set ATHENA_CORE_NUMBER=12
[2025-07-07 05:47:28] Starting ATLAS job with PandaID=6723174589
[2025-07-07 05:47:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-07 05:51:59]  *** The last 200 lines of the pilot log: ***
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | INFO     | extracted standard memory fields from prmon json
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | WARNING  | wrong length of table data, x=[1751892524.0], y=[501.0] (must be same and length>=4)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | could have reported an average CPU frequency of 2093 MHz (4 samples)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | ..............................
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . Timing measurements:
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . get job = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . initial setup = 4 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . payload setup = 15 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . stage-in = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . payload execution = 36 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . stage-out = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . log creation = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | ..............................
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6723174589/pilotlog.txt
[2025-07-07 05:51:59] 2025-07-07 12:51:26,188 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-07 05:51:59] - Log from pilotlog.txt -
[2025-07-07 05:51:59] 2025-07-07 12:51:26,118 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6723174589/memory_monitor_summary.json (trf name=prmon)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | INFO     | extracted standard info from prmon json
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | INFO     | extracted standard memory fields from prmon json
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | WARNING  | wrong length of table data, x=[1751892524.0], y=[501.0] (must be same and length>=4)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | could have reported an average CPU frequency of 2093 MHz (4 samples)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | ..............................
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . Timing measurements:
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . get job = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . initial setup = 4 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . payload setup = 15 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . stage-in = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . payload execution = 36 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . stage-out = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . log creation = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | ..............................
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6723174589/pilotlog.txt
[2025-07-07 05:51:59] 2025-07-07 12:51:26,193 | WARNING  | 
[2025-07-07 05:51:59] [begin log extracts]
[2025-07-07 05:51:59] - Log from pilotlog.txt -
[2025-07-07 05:51:59] 2025-07-07 12:51:26,118 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6723174589/memory_monitor_summary.json (trf name=prmon)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | INFO     | extracted standard info from prmon json
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | INFO     | extracted standard memory fields from prmon json
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-07 05:51:59] 2025-07-07 12:51:26,119 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | WARNING  | wrong length of table data, x=[1751892524.0], y=[501.0] (must be same and length>=4)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | could have reported an average CPU frequency of 2093 MHz (4 samples)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | ..............................
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . Timing measurements:
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . get job = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . initial setup = 4 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,120 | INFO     | . payload setup = 15 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . stage-in = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . payload execution = 36 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . stage-out = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | . log creation = 0 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | ..............................
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:51:59] 2025-07-07 12:51:26,121 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6723174589/pilotlog.txt
[2025-07-07 05:51:59] [end log extracts]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,193 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,194 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-07 05:51:59] 2025-07-07 12:51:26,350 | INFO     | 
[2025-07-07 05:51:59] 2025-07-07 12:51:26,350 | INFO     | job summary report
[2025-07-07 05:51:59] 2025-07-07 12:51:26,350 | INFO     | --------------------------------------------------
[2025-07-07 05:51:59] 2025-07-07 12:51:26,350 | INFO     | PanDA job id: 6723174589
[2025-07-07 05:51:59] 2025-07-07 12:51:26,350 | INFO     | task id: 45482040
[2025-07-07 05:51:59] 2025-07-07 12:51:26,350 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-07 05:49:02,934 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-07 05:51:59] 2025-07-07 12:51:26,350 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | pilot state: failed 
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | transexitcode: 65
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | exeerrorcode: 65
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | exitcode: 65
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | cpuconsumptiontime: 20 s
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | nevents: 0
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | neventsw: 0
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | pid: 962936
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | pgrp: 962936
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | corecount: 12
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | event service: False
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | sizes: {0: 2366506, 10: 2366768, 11: 2366796, 55: 2390104, 57: 2394484, 189: 2394622}
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | --------------------------------------------------
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | 
[2025-07-07 05:51:59] 2025-07-07 12:51:26,351 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-07 05:51:59] 2025-07-07 12:51:26,413 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,414 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,414 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,414 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,414 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,414 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,414 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,414 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,414 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,415 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,415 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,415 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-07 05:51:59] 2025-07-07 12:51:26,415 | INFO     | job 6723174589 has completed (purged errors)
[2025-07-07 05:51:59] 2025-07-07 12:51:26,416 | INFO     | overall cleanup function is called
[2025-07-07 05:51:59] 2025-07-07 12:51:27,422 | INFO     | --- collectZombieJob: --- 10, [962936]
[2025-07-07 05:51:59] 2025-07-07 12:51:27,422 | INFO     | zombie collector waiting for pid 962936
[2025-07-07 05:51:59] 2025-07-07 12:51:27,422 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-07 05:51:59] 2025-07-07 12:51:27,422 | INFO     | collected zombie processes
[2025-07-07 05:51:59] 2025-07-07 12:51:27,423 | INFO     | will attempt to kill all subprocesses of pid=962936
[2025-07-07 05:51:59] 2025-07-07 12:51:28,087 | INFO     | process IDs to be killed: [962936] (in reverse order)
[2025-07-07 05:51:59] 2025-07-07 12:51:28,185 | WARNING  | found no corresponding commands to process id(s)
[2025-07-07 05:51:59] 2025-07-07 12:51:28,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-07 05:51:59] 2025-07-07 12:51:28,201 | INFO     | did not find any defunct processes belonging to 962936
[2025-07-07 05:51:59] 2025-07-07 12:51:28,217 | INFO     | did not find any defunct processes belonging to 962936
[2025-07-07 05:51:59] 2025-07-07 12:51:28,217 | INFO     | ready for new job
[2025-07-07 05:51:59] 2025-07-07 12:51:28,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-07 05:51:59] 2025-07-07 12:51:28,220 | INFO     | ***************************************
[2025-07-07 05:51:59] 2025-07-07 12:51:28,220 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-07 05:51:59] 2025-07-07 12:51:28,220 | INFO     | ***************************************
[2025-07-07 05:51:59] 2025-07-07 12:51:28,220 | INFO     | 
[2025-07-07 05:51:59] 2025-07-07 12:51:28,223 | INFO     | architecture information:
[2025-07-07 05:51:59] 2025-07-07 12:51:28,223 | INFO     | executing command: cat /etc/os-release
[2025-07-07 05:51:59] 2025-07-07 12:51:28,260 | INFO     | cat /etc/os-release:
[2025-07-07 05:51:59] NAME="CentOS Linux"
[2025-07-07 05:51:59] VERSION="7 (Core)"
[2025-07-07 05:51:59] ID="centos"
[2025-07-07 05:51:59] ID_LIKE="rhel fedora"
[2025-07-07 05:51:59] VERSION_ID="7"
[2025-07-07 05:51:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-07 05:51:59] ANSI_COLOR="0;31"
[2025-07-07 05:51:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-07 05:51:59] HOME_URL="https://www.centos.org/"
[2025-07-07 05:51:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-07 05:51:59] 
[2025-07-07 05:51:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-07 05:51:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-07 05:51:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-07 05:51:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-07 05:51:59] 
[2025-07-07 05:51:59] 2025-07-07 12:51:28,260 | INFO     | ***************************************
[2025-07-07 05:51:59] 2025-07-07 12:51:28,765 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-07 05:51:59] 2025-07-07 12:51:28,870 | INFO     | sufficient remaining disk space (1793807351808 B)
[2025-07-07 05:51:59] 2025-07-07 12:51:28,871 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-07 05:51:59] 2025-07-07 12:51:28,871 | INFO     | current server update state: UPDATING_FINAL
[2025-07-07 05:51:59] 2025-07-07 12:51:28,871 | INFO     | update_server=False
[2025-07-07 05:51:59] 2025-07-07 12:51:28,871 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-07 05:51:59] 2025-07-07 12:51:29,126 | INFO     | all payload control threads have been joined
[2025-07-07 05:51:59] 2025-07-07 12:51:29,466 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-07 05:51:59] 2025-07-07 12:51:29,466 | INFO     | aborting loop
[2025-07-07 05:51:59] 2025-07-07 12:51:29,525 | INFO     | all data control threads have been joined
[2025-07-07 05:51:59] 2025-07-07 12:51:29,564 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-07 05:51:59] 2025-07-07 12:51:29,879 | INFO     | [job] retrieve thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:29,914 | INFO     | [payload] execute_payloads thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:29,970 | INFO     | [job] create_data_payload thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:30,132 | INFO     | [payload] control thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:30,136 | INFO     | [payload] validate_pre thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:30,455 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-07 05:51:59] 2025-07-07 12:51:30,472 | INFO     | [job] job monitor thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:30,531 | INFO     | [data] control thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:30,550 | INFO     | all job control threads have been joined
[2025-07-07 05:51:59] 2025-07-07 12:51:30,617 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:30,650 | INFO     | [payload] validate_post thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:30,740 | INFO     | [data] copytool_in thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:31,126 | INFO     | [job] validate thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:31,317 | INFO     | [payload] failed_post thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:31,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-07 05:51:59] 2025-07-07 12:51:31,556 | INFO     | [job] control thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:31,570 | INFO     | [data] copytool_out thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:32,374 | INFO     | [job] queue monitor thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:34,465 | INFO     | [data] queue_monitor thread has finished
[2025-07-07 05:51:59] 2025-07-07 12:51:35,457 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140307686844224)>', '<ExcThread(monitor, started 140307295356672)>']
[2025-07-07 05:51:59] 2025-07-07 12:51:40,483 | INFO     | all workflow threads have been joined
[2025-07-07 05:51:59] 2025-07-07 12:51:40,483 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-07 05:51:59] 2025-07-07 12:51:40,484 | INFO     | traces error code: 0
[2025-07-07 05:51:59] 2025-07-07 12:51:40,484 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-07 05:51:59] 2025-07-07 12:51:59,085 | INFO     | PID=956554 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-07 05:51:59] 2025-07-07 12:51:59,085 | INFO     | .. there are 27 such processes running
[2025-07-07 05:51:59] 2025-07-07 12:51:59,086 | INFO     | found 0 job(s) in 20 queues
[2025-07-07 05:51:59] 2025-07-07 12:51:59,086 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-07 05:51:59] 2025-07-07 12:51:59,086 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-07 05:51:59] 2025-07-07 12:51:59,086 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-07 05:51:59] 2025-07-07 12:51:59,086 | INFO     | [monitor] control thread has ended
[2025-07-07 05:51:59] 2025-07-07 12:51:59,200 [wrapper] ==== pilot stdout END ====
[2025-07-07 05:51:59] 2025-07-07 12:51:59,203 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-07 05:51:59] 2025-07-07 12:51:59,208 [wrapper] pilotpid: 956554
[2025-07-07 05:51:59] 2025-07-07 12:51:59,210 [wrapper] Pilot exit status: 0
[2025-07-07 05:51:59] 2025-07-07 12:51:59,224 [wrapper] pandaids: 6723174589
[2025-07-07 05:51:59] 2025-07-07 12:51:59,280 [wrapper] cleanup supervisor_pilot  956560 956555
[2025-07-07 05:51:59] 2025-07-07 12:51:59,282 [wrapper] Test setup, not cleaning
[2025-07-07 05:51:59] 2025-07-07 12:51:59,285 [wrapper] apfmon messages muted
[2025-07-07 05:51:59] 2025-07-07 12:51:59,305 [wrapper] ==== wrapper stdout END ====
[2025-07-07 05:51:59] 2025-07-07 12:51:59,322 [wrapper] ==== wrapper stderr END ====
[2025-07-07 05:51:59]  *** Error codes and diagnostics ***
[2025-07-07 05:51:59]     "exeErrorCode": 65,
[2025-07-07 05:51:59]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-07 05:51:59]     "pilotErrorCode": 1305,
[2025-07-07 05:51:59]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-07 05:51:59]  *** Listing of results directory ***
[2025-07-07 05:51:59] total 309876
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc    530466 Jul  7 03:18 pilot3.tar.gz
[2025-07-07 05:51:59] -rwx------. 1 boinc boinc     36292 Jul  7 03:40 runpilot2-wrapper.sh
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc      5112 Jul  7 03:40 queuedata.json
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc       100 Jul  7 05:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-07 05:51:59] -rwxr-xr-x. 1 boinc boinc      7986 Jul  7 05:47 run_atlas
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc       105 Jul  7 05:47 job.xml
[2025-07-07 05:51:59] -rw-r--r--. 2 boinc boinc 313265672 Jul  7 05:47 EVNT.45482038._000235.pool.root.1
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc      6594 Jul  7 05:47 init_data.xml
[2025-07-07 05:51:59] -rw-r--r--. 2 boinc boinc     15095 Jul  7 05:47 start_atlas.sh
[2025-07-07 05:51:59] drwxrwx--x. 2 boinc boinc      4096 Jul  7 05:47 shared
[2025-07-07 05:51:59] -rw-r--r--. 2 boinc boinc    542885 Jul  7 05:47 input.tar.gz
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc         0 Jul  7 05:47 boinc_lockfile
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc      2541 Jul  7 05:47 pandaJob.out
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc    970740 Jul  7 05:47 agis_schedconf.cvmfs.json
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc   1573983 Jul  7 05:47 agis_ddmendpoints.agis.ALL.json
[2025-07-07 05:51:59] drwx------. 4 boinc boinc      4096 Jul  7 05:47 pilot3
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc       523 Jul  7 05:49 boinc_task_state.xml
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc       961 Jul  7 05:49 memory_monitor_summary.json
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc     21392 Jul  7 05:49 log.45482040._008516.job.log.tgz.1
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc      8380 Jul  7 05:51 heartbeat.json
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc      8192 Jul  7 05:51 boinc_mmap_file
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc        22 Jul  7 05:51 wrapper_checkpoint.txt
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc       822 Jul  7 05:51 pilotlog.txt
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc        95 Jul  7 05:51 pilot_heartbeat.json
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc     79543 Jul  7 05:51 log.45482040._008516.job.log.1
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc       188 Jul  7 05:51 output.list
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc       620 Jul  7 05:51 runtime_log
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc    122880 Jul  7 05:51 result.tar.gz
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc      8485 Jul  7 05:51 runtime_log.err
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc       644 Jul  7 05:51 BIIODmTSys7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4FFLDmqkDzom.diag
[2025-07-07 05:51:59] -rw-r--r--. 1 boinc boinc     21761 Jul  7 05:51 stderr.txt
[2025-07-07 05:51:59] No HITS result produced
[2025-07-07 05:51:59]  *** Contents of shared directory: ***
[2025-07-07 05:51:59] total 306592
[2025-07-07 05:51:59] -rw-r--r--. 2 boinc boinc 313265672 Jul  7 05:47 ATLAS.root_0
[2025-07-07 05:51:59] -rw-r--r--. 2 boinc boinc     15095 Jul  7 05:47 start_atlas.sh
[2025-07-07 05:51:59] -rw-r--r--. 2 boinc boinc    542885 Jul  7 05:47 input.tar.gz
[2025-07-07 05:51:59] -rw-------. 1 boinc boinc    122880 Jul  7 05:51 result.tar.gz
05:52:00 (952946): run_atlas exited; CPU time 28.191946
05:52:00 (952946): called boinc_finish(0)

</stderr_txt>
]]>

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