Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:08:49 (219879): wrapper (7.7.26015): starting
05:08:49 (219879): wrapper: running run_atlas (--nthreads 12)
[2025-07-07 05:08:49] Arguments: --nthreads 12
[2025-07-07 05:08:49] Threads: 12
[2025-07-07 05:08:49] Checking for CVMFS
[2025-07-07 05:08:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-07 05:08:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-07 05:08:49] Running cvmfs_config stat atlas.cern.ch
[2025-07-07 05:08:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-07 05:08:50] 2.11.5.0 6724 8322 243616 148039 2 616 24114920 45568000 16833 130560 0 72455936 99.775 49804014 29785 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-07 05:08:50] CVMFS is ok
[2025-07-07 05:08:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-07 05:08:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-07 05:08:50] Further information can be found at the LHC@home message board.
[2025-07-07 05:08:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-07 05:08:50] Checking for apptainer binary...
[2025-07-07 05:08:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-07 05:08:50] Running /usr/bin/apptainer --version
[2025-07-07 05:08:51] apptainer version 1.4.1-1.el9
[2025-07-07 05:08:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-07 05:08:52] wns0027.triumf.lcg
[2025-07-07 05:08:52] apptainer works
[2025-07-07 05:08:52] Set ATHENA_PROC_NUMBER=12
[2025-07-07 05:08:52] Set ATHENA_CORE_NUMBER=12
[2025-07-07 05:08:52] Starting ATLAS job with PandaID=6722134167
[2025-07-07 05:08:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-07 05:13:46]  *** The last 200 lines of the pilot log: ***
[2025-07-07 05:13:46] 2025-07-07 12:13:12,898 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-07 05:13:46] 2025-07-07 12:13:12,898 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | WARNING  | wrong length of table data, x=[1751890235.0], y=[829.0] (must be same and length>=4)
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | could have reported an average CPU frequency of 2609 MHz (4 samples)
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | ..............................
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . Timing measurements:
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . get job = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . initial setup = 5 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . payload setup = 20 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . stage-in = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . payload execution = 40 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . stage-out = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . log creation = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | ..............................
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6722134167/pilotlog.txt
[2025-07-07 05:13:46] 2025-07-07 12:13:12,906 | INFO     | monitor loop #71: job 0:6722134167 is in state 'failed'
[2025-07-07 05:13:46] 2025-07-07 12:13:12,907 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-07 05:13:46] 2025-07-07 12:13:12,914 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-07 05:13:46] - Log from pilotlog.txt -
[2025-07-07 05:13:46] 2025-07-07 12:13:12,894 | INFO     | extracted standard memory fields from prmon json
[2025-07-07 05:13:46] 2025-07-07 12:13:12,894 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-07 05:13:46] 2025-07-07 12:13:12,898 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-07 05:13:46] 2025-07-07 12:13:12,898 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | WARNING  | wrong length of table data, x=[1751890235.0], y=[829.0] (must be same and length>=4)
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | could have reported an average CPU frequency of 2609 MHz (4 samples)
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | ..............................
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . Timing measurements:
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . get job = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . initial setup = 5 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . payload setup = 20 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . stage-in = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . payload execution = 40 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . stage-out = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . log creation = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | ..............................
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6722134167/pilotlog.txt
[2025-07-07 05:13:46] 2025-07-07 12:13:12,906 | INFO     | monitor loop #71: job 0:6722134167 is in state 'failed'
[2025-07-07 05:13:46] 2025-07-07 12:13:12,907 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-07 05:13:46] 2025-07-07 12:13:12,914 | WARNING  | 
[2025-07-07 05:13:46] [begin log extracts]
[2025-07-07 05:13:46] - Log from pilotlog.txt -
[2025-07-07 05:13:46] 2025-07-07 12:13:12,894 | INFO     | extracted standard memory fields from prmon json
[2025-07-07 05:13:46] 2025-07-07 12:13:12,894 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-07 05:13:46] 2025-07-07 12:13:12,898 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-07 05:13:46] 2025-07-07 12:13:12,898 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | WARNING  | wrong length of table data, x=[1751890235.0], y=[829.0] (must be same and length>=4)
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | could have reported an average CPU frequency of 2609 MHz (4 samples)
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | ..............................
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . Timing measurements:
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . get job = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . initial setup = 5 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,899 | INFO     | . payload setup = 20 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . stage-in = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . payload execution = 40 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . stage-out = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | . log creation = 0 s
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | ..............................
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:13:46] 2025-07-07 12:13:12,900 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6722134167/pilotlog.txt
[2025-07-07 05:13:46] 2025-07-07 12:13:12,906 | INFO     | monitor loop #71: job 0:6722134167 is in state 'failed'
[2025-07-07 05:13:46] 2025-07-07 12:13:12,907 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-07 05:13:46] [end log extracts]
[2025-07-07 05:13:46] 2025-07-07 12:13:12,914 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-07 05:13:46] 2025-07-07 12:13:12,915 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-07 05:13:46] 2025-07-07 12:13:13,353 | INFO     | 
[2025-07-07 05:13:46] 2025-07-07 12:13:13,353 | INFO     | job summary report
[2025-07-07 05:13:46] 2025-07-07 12:13:13,353 | INFO     | --------------------------------------------------
[2025-07-07 05:13:46] 2025-07-07 12:13:13,353 | INFO     | PanDA job id: 6722134167
[2025-07-07 05:13:46] 2025-07-07 12:13:13,353 | INFO     | task id: 45482148
[2025-07-07 05:13:46] 2025-07-07 12:13:13,353 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-07 05:10:55,398 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-07 05:13:46] 2025-07-07 12:13:13,353 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-07 05:13:46] 2025-07-07 12:13:13,353 | INFO     | pilot state: failed 
[2025-07-07 05:13:46] 2025-07-07 12:13:13,353 | INFO     | transexitcode: 65
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | exeerrorcode: 65
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | exitcode: 65
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | cpuconsumptiontime: 16 s
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | nevents: 0
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | neventsw: 0
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | pid: 230154
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | pgrp: 230154
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | corecount: 12
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | event service: False
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | sizes: {0: 2365758, 1: 2366440, 2: 2366468, 3: 2366667, 10: 2366929, 14: 2366957, 64: 2390480, 65: 2394804, 66: 2394804, 192: 2394970}
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | --------------------------------------------------
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | 
[2025-07-07 05:13:46] 2025-07-07 12:13:13,354 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-07 05:13:46] 2025-07-07 12:13:13,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,514 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,514 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,514 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,515 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,516 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-07 05:13:46] 2025-07-07 12:13:13,516 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,516 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-07 05:13:46] 2025-07-07 12:13:13,516 | INFO     | job 6722134167 has completed (purged errors)
[2025-07-07 05:13:46] 2025-07-07 12:13:13,516 | INFO     | overall cleanup function is called
[2025-07-07 05:13:46] 2025-07-07 12:13:14,523 | INFO     | --- collectZombieJob: --- 10, [230154]
[2025-07-07 05:13:46] 2025-07-07 12:13:14,523 | INFO     | zombie collector waiting for pid 230154
[2025-07-07 05:13:46] 2025-07-07 12:13:14,523 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-07 05:13:46] 2025-07-07 12:13:14,523 | INFO     | collected zombie processes
[2025-07-07 05:13:46] 2025-07-07 12:13:14,523 | INFO     | will attempt to kill all subprocesses of pid=230154
[2025-07-07 05:13:46] 2025-07-07 12:13:15,202 | INFO     | process IDs to be killed: [230154] (in reverse order)
[2025-07-07 05:13:46] 2025-07-07 12:13:15,289 | WARNING  | found no corresponding commands to process id(s)
[2025-07-07 05:13:46] 2025-07-07 12:13:15,289 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-07 05:13:46] 2025-07-07 12:13:15,325 | INFO     | did not find any defunct processes belonging to 230154
[2025-07-07 05:13:46] 2025-07-07 12:13:15,333 | INFO     | did not find any defunct processes belonging to 230154
[2025-07-07 05:13:46] 2025-07-07 12:13:15,333 | INFO     | ready for new job
[2025-07-07 05:13:46] 2025-07-07 12:13:15,333 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-07 05:13:46] 2025-07-07 12:13:15,334 | INFO     | ***************************************
[2025-07-07 05:13:46] 2025-07-07 12:13:15,335 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-07 05:13:46] 2025-07-07 12:13:15,335 | INFO     | ***************************************
[2025-07-07 05:13:46] 2025-07-07 12:13:15,335 | INFO     | 
[2025-07-07 05:13:46] 2025-07-07 12:13:15,336 | INFO     | architecture information:
[2025-07-07 05:13:46] 2025-07-07 12:13:15,337 | INFO     | executing command: cat /etc/os-release
[2025-07-07 05:13:46] 2025-07-07 12:13:15,350 | INFO     | cat /etc/os-release:
[2025-07-07 05:13:46] NAME="CentOS Linux"
[2025-07-07 05:13:46] VERSION="7 (Core)"
[2025-07-07 05:13:46] ID="centos"
[2025-07-07 05:13:46] ID_LIKE="rhel fedora"
[2025-07-07 05:13:46] VERSION_ID="7"
[2025-07-07 05:13:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-07 05:13:46] ANSI_COLOR="0;31"
[2025-07-07 05:13:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-07 05:13:46] HOME_URL="https://www.centos.org/"
[2025-07-07 05:13:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-07 05:13:46] 
[2025-07-07 05:13:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-07 05:13:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-07 05:13:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-07 05:13:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-07 05:13:46] 
[2025-07-07 05:13:46] 2025-07-07 12:13:15,350 | INFO     | ***************************************
[2025-07-07 05:13:46] 2025-07-07 12:13:15,854 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-07 05:13:46] 2025-07-07 12:13:15,884 | INFO     | sufficient remaining disk space (1820805038080 B)
[2025-07-07 05:13:46] 2025-07-07 12:13:15,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-07 05:13:46] 2025-07-07 12:13:15,885 | INFO     | current server update state: UPDATING_FINAL
[2025-07-07 05:13:46] 2025-07-07 12:13:15,885 | INFO     | update_server=False
[2025-07-07 05:13:46] 2025-07-07 12:13:15,886 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-07 05:13:46] 2025-07-07 12:13:15,887 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-07 05:13:46] 2025-07-07 12:13:16,475 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-07 05:13:46] 2025-07-07 12:13:16,475 | INFO     | aborting loop
[2025-07-07 05:13:46] 2025-07-07 12:13:16,609 | INFO     | all payload control threads have been joined
[2025-07-07 05:13:46] 2025-07-07 12:13:16,639 | INFO     | all data control threads have been joined
[2025-07-07 05:13:46] 2025-07-07 12:13:16,891 | INFO     | [job] retrieve thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:17,139 | INFO     | [payload] failed_post thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:17,209 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:17,248 | INFO     | [payload] execute_payloads thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:17,265 | INFO     | all job control threads have been joined
[2025-07-07 05:13:46] 2025-07-07 12:13:17,481 | INFO     | [job] job monitor thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:17,549 | INFO     | [job] create_data_payload thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:17,615 | INFO     | [payload] control thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:17,645 | INFO     | [data] control thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:17,893 | INFO     | [data] copytool_out thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:17,997 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-07 05:13:46] 2025-07-07 12:13:18,105 | INFO     | [payload] validate_pre thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:18,127 | INFO     | [job] validate thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:18,158 | INFO     | [data] copytool_in thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:18,270 | INFO     | [payload] validate_post thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:18,271 | INFO     | [job] control thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:18,936 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-07 05:13:46] 2025-07-07 12:13:19,003 | INFO     | [job] queue monitor thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:22,945 | INFO     | [data] queue_monitor thread has finished
[2025-07-07 05:13:46] 2025-07-07 12:13:24,307 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140315878426432)>', '<ExcThread(monitor, started 140314937374464)>']
[2025-07-07 05:13:46] 2025-07-07 12:13:29,335 | INFO     | all workflow threads have been joined
[2025-07-07 05:13:46] 2025-07-07 12:13:29,335 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-07 05:13:46] 2025-07-07 12:13:29,335 | INFO     | traces error code: 0
[2025-07-07 05:13:46] 2025-07-07 12:13:29,336 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-07 05:13:46] 2025-07-07 12:13:45,394 | INFO     | PID=223488 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-07 05:13:46] 2025-07-07 12:13:45,394 | INFO     | .. there are 27 such processes running
[2025-07-07 05:13:46] 2025-07-07 12:13:45,395 | INFO     | found 0 job(s) in 20 queues
[2025-07-07 05:13:46] 2025-07-07 12:13:45,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-07 05:13:46] 2025-07-07 12:13:45,395 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-07 05:13:46] 2025-07-07 12:13:45,395 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-07 05:13:46] 2025-07-07 12:13:45,395 | INFO     | [monitor] control thread has ended
[2025-07-07 05:13:46] 2025-07-07 12:13:45,505 [wrapper] ==== pilot stdout END ====
[2025-07-07 05:13:46] 2025-07-07 12:13:45,535 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-07 05:13:46] 2025-07-07 12:13:45,545 [wrapper] pilotpid: 223488
[2025-07-07 05:13:46] 2025-07-07 12:13:45,568 [wrapper] Pilot exit status: 0
[2025-07-07 05:13:46] 2025-07-07 12:13:45,675 [wrapper] pandaids: 6722134167
[2025-07-07 05:13:46] 2025-07-07 12:13:45,896 [wrapper] cleanup supervisor_pilot  223494 223489
[2025-07-07 05:13:46] 2025-07-07 12:13:45,899 [wrapper] Test setup, not cleaning
[2025-07-07 05:13:46] 2025-07-07 12:13:45,900 [wrapper] apfmon messages muted
[2025-07-07 05:13:46] 2025-07-07 12:13:45,902 [wrapper] ==== wrapper stdout END ====
[2025-07-07 05:13:46] 2025-07-07 12:13:45,903 [wrapper] ==== wrapper stderr END ====
[2025-07-07 05:13:46]  *** Error codes and diagnostics ***
[2025-07-07 05:13:46]     "exeErrorCode": 65,
[2025-07-07 05:13:46]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-07 05:13:46]     "pilotErrorCode": 1305,
[2025-07-07 05:13:46]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-07 05:13:46]  *** Listing of results directory ***
[2025-07-07 05:13:46] total 319496
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc    530466 Jul  7 02:46 pilot3.tar.gz
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc      5112 Jul  7 03:10 queuedata.json
[2025-07-07 05:13:46] -rwx------. 1 boinc boinc     36292 Jul  7 03:10 runpilot2-wrapper.sh
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc       100 Jul  7 05:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-07 05:13:46] -rwxr-xr-x. 1 boinc boinc      7986 Jul  7 05:08 run_atlas
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc       105 Jul  7 05:08 job.xml
[2025-07-07 05:13:46] -rw-r--r--. 2 boinc boinc 323116620 Jul  7 05:08 EVNT.45482146._000290.pool.root.1
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc      6597 Jul  7 05:08 init_data.xml
[2025-07-07 05:13:46] -rw-r--r--. 2 boinc boinc     15095 Jul  7 05:08 start_atlas.sh
[2025-07-07 05:13:46] drwxrwx--x. 2 boinc boinc      4096 Jul  7 05:08 shared
[2025-07-07 05:13:46] -rw-r--r--. 2 boinc boinc    542914 Jul  7 05:08 input.tar.gz
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc         0 Jul  7 05:08 boinc_lockfile
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc      2615 Jul  7 05:08 pandaJob.out
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc    970740 Jul  7 05:09 agis_schedconf.cvmfs.json
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc   1573983 Jul  7 05:09 agis_ddmendpoints.agis.ALL.json
[2025-07-07 05:13:46] drwx------. 4 boinc boinc      4096 Jul  7 05:09 pilot3
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc       524 Jul  7 05:10 boinc_task_state.xml
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc       961 Jul  7 05:11 memory_monitor_summary.json
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc     21591 Jul  7 05:11 log.45482148._016756.job.log.tgz.1
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc      8393 Jul  7 05:13 heartbeat.json
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc      8192 Jul  7 05:13 boinc_mmap_file
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc        22 Jul  7 05:13 wrapper_checkpoint.txt
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc        95 Jul  7 05:13 pilot_heartbeat.json
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc       822 Jul  7 05:13 pilotlog.txt
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc     79888 Jul  7 05:13 log.45482148._016756.job.log.1
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc       188 Jul  7 05:13 output.list
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc       620 Jul  7 05:13 runtime_log
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc    122880 Jul  7 05:13 result.tar.gz
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc      8485 Jul  7 05:13 runtime_log.err
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc       644 Jul  7 05:13 duyKDmqyxs7n9Rq4apOajLDm4fhM0noT9bVof3QYDmkMsKDm3lJ7Nm.diag
[2025-07-07 05:13:46] -rw-r--r--. 1 boinc boinc     21843 Jul  7 05:13 stderr.txt
[2025-07-07 05:13:46] No HITS result produced
[2025-07-07 05:13:46]  *** Contents of shared directory: ***
[2025-07-07 05:13:46] total 316212
[2025-07-07 05:13:46] -rw-r--r--. 2 boinc boinc 323116620 Jul  7 05:08 ATLAS.root_0
[2025-07-07 05:13:46] -rw-r--r--. 2 boinc boinc     15095 Jul  7 05:08 start_atlas.sh
[2025-07-07 05:13:46] -rw-r--r--. 2 boinc boinc    542914 Jul  7 05:08 input.tar.gz
[2025-07-07 05:13:46] -rw-------. 1 boinc boinc    122880 Jul  7 05:13 result.tar.gz
05:13:47 (219879): run_atlas exited; CPU time 24.635886
05:13:47 (219879): called boinc_finish(0)

</stderr_txt>
]]>

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