Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:03:16 (3519635): wrapper (7.7.26015): starting
05:03:16 (3519635): wrapper: running run_atlas (--nthreads 12)
[2025-07-07 05:03:16] Arguments: --nthreads 12
[2025-07-07 05:03:16] Threads: 12
[2025-07-07 05:03:16] Checking for CVMFS
[2025-07-07 05:03:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-07 05:03:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-07 05:03:16] Running cvmfs_config stat atlas.cern.ch
[2025-07-07 05:03:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-07 05:03:17] 2.11.3.0 1989253 15129 239276 148039 1 566 38394701 45568001 21880 130560 0 267748063 99.826 150467321 15430 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-07 05:03:17] CVMFS is ok
[2025-07-07 05:03:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-07 05:03:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-07 05:03:17] Further information can be found at the LHC@home message board.
[2025-07-07 05:03:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-07 05:03:17] Checking for apptainer binary...
[2025-07-07 05:03:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-07 05:03:17] Running /usr/bin/apptainer --version
[2025-07-07 05:03:17] apptainer version 1.3.3-1.el9
[2025-07-07 05:03:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-07 05:03:17] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0169.triumf.lcg
[2025-07-07 05:03:17] apptainer works
[2025-07-07 05:03:17] Set ATHENA_PROC_NUMBER=12
[2025-07-07 05:03:17] Set ATHENA_CORE_NUMBER=12
[2025-07-07 05:03:17] Starting ATLAS job with PandaID=6721880154
[2025-07-07 05:03:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-07 05:07:41]  *** The last 200 lines of the pilot log: ***
[2025-07-07 05:07:41] 2025-07-07 12:07:07,227 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | WARNING  | wrong length of table data, x=[1751889877.0], y=[22323.0] (must be same and length>=4)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | could have reported an average CPU frequency of 2949 MHz (4 samples)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | ..............................
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . Timing measurements:
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . get job = 0 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . initial setup = 3 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . payload setup = 13 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . stage-in = 0 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . payload execution = 39 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . stage-out = 1 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . log creation = 0 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | ..............................
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:07:41] 2025-07-07 12:07:07,229 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6721880154/pilotlog.txt
[2025-07-07 05:07:41] 2025-07-07 12:07:07,236 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-07 05:07:41] - Log from pilotlog.txt -
[2025-07-07 05:07:41] 2025-07-07 12:07:07,226 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6721880154/memory_monitor_summary.json (trf name=prmon)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,227 | INFO     | extracted standard info from prmon json
[2025-07-07 05:07:41] 2025-07-07 12:07:07,227 | INFO     | extracted standard memory fields from prmon json
[2025-07-07 05:07:41] 2025-07-07 12:07:07,227 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-07 05:07:41] 2025-07-07 12:07:07,227 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-07 05:07:41] 2025-07-07 12:07:07,227 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | WARNING  | wrong length of table data, x=[1751889877.0], y=[22323.0] (must be same and length>=4)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | could have reported an average CPU frequency of 2949 MHz (4 samples)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | ..............................
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . Timing measurements:
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . get job = 0 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . initial setup = 3 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . payload setup = 13 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . stage-in = 0 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . payload execution = 39 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . stage-out = 1 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . log creation = 0 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | ..............................
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:07:41] 2025-07-07 12:07:07,229 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6721880154/pilotlog.txt
[2025-07-07 05:07:41] 2025-07-07 12:07:07,236 | WARNING  | 
[2025-07-07 05:07:41] [begin log extracts]
[2025-07-07 05:07:41] - Log from pilotlog.txt -
[2025-07-07 05:07:41] 2025-07-07 12:07:07,226 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6721880154/memory_monitor_summary.json (trf name=prmon)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,227 | INFO     | extracted standard info from prmon json
[2025-07-07 05:07:41] 2025-07-07 12:07:07,227 | INFO     | extracted standard memory fields from prmon json
[2025-07-07 05:07:41] 2025-07-07 12:07:07,227 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-07 05:07:41] 2025-07-07 12:07:07,227 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-07 05:07:41] 2025-07-07 12:07:07,227 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | WARNING  | wrong length of table data, x=[1751889877.0], y=[22323.0] (must be same and length>=4)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | could have reported an average CPU frequency of 2949 MHz (4 samples)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | ..............................
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . Timing measurements:
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . get job = 0 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . initial setup = 3 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . payload setup = 13 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . stage-in = 0 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . payload execution = 39 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . stage-out = 1 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | . log creation = 0 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | ..............................
[2025-07-07 05:07:41] 2025-07-07 12:07:07,228 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-07 05:07:41] 2025-07-07 12:07:07,229 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6721880154/pilotlog.txt
[2025-07-07 05:07:41] [end log extracts]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,236 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,237 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-07 05:07:41] 2025-07-07 12:07:07,286 | INFO     | 
[2025-07-07 05:07:41] 2025-07-07 12:07:07,286 | INFO     | job summary report
[2025-07-07 05:07:41] 2025-07-07 12:07:07,286 | INFO     | --------------------------------------------------
[2025-07-07 05:07:41] 2025-07-07 12:07:07,286 | INFO     | PanDA job id: 6721880154
[2025-07-07 05:07:41] 2025-07-07 12:07:07,286 | INFO     | task id: 45482040
[2025-07-07 05:07:41] 2025-07-07 12:07:07,286 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-07 05:04:55,676 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-07 05:07:41] 2025-07-07 12:07:07,286 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-07 05:07:41] 2025-07-07 12:07:07,286 | INFO     | pilot state: failed 
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | transexitcode: 65
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | exeerrorcode: 65
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | exitcode: 65
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | cpuconsumptiontime: 12 s
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | nevents: 0
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | neventsw: 0
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | pid: 3529572
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | pgrp: 3529572
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | corecount: 12
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | event service: False
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | sizes: {0: 2366562, 11: 2366562, 12: 2366852, 21: 2366880, 56: 2390111, 59: 2394559, 178: 2394697}
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | --------------------------------------------------
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | 
[2025-07-07 05:07:41] 2025-07-07 12:07:07,287 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,299 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,300 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,300 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,300 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,300 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,300 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,300 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,300 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-07 05:07:41] 2025-07-07 12:07:07,300 | INFO     | job 6721880154 has completed (purged errors)
[2025-07-07 05:07:41] 2025-07-07 12:07:07,300 | INFO     | overall cleanup function is called
[2025-07-07 05:07:41] 2025-07-07 12:07:08,308 | INFO     | --- collectZombieJob: --- 10, [3529572]
[2025-07-07 05:07:41] 2025-07-07 12:07:08,308 | INFO     | zombie collector waiting for pid 3529572
[2025-07-07 05:07:41] 2025-07-07 12:07:08,308 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-07 05:07:41] 2025-07-07 12:07:08,308 | INFO     | collected zombie processes
[2025-07-07 05:07:41] 2025-07-07 12:07:08,308 | INFO     | will attempt to kill all subprocesses of pid=3529572
[2025-07-07 05:07:41] 2025-07-07 12:07:08,454 | INFO     | process IDs to be killed: [3529572] (in reverse order)
[2025-07-07 05:07:41] 2025-07-07 12:07:08,506 | WARNING  | found no corresponding commands to process id(s)
[2025-07-07 05:07:41] 2025-07-07 12:07:08,507 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-07 05:07:41] 2025-07-07 12:07:08,513 | INFO     | did not find any defunct processes belonging to 3529572
[2025-07-07 05:07:41] 2025-07-07 12:07:08,518 | INFO     | did not find any defunct processes belonging to 3529572
[2025-07-07 05:07:41] 2025-07-07 12:07:08,518 | INFO     | ready for new job
[2025-07-07 05:07:41] 2025-07-07 12:07:08,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-07 05:07:41] 2025-07-07 12:07:08,519 | INFO     | ***************************************
[2025-07-07 05:07:41] 2025-07-07 12:07:08,519 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-07 05:07:41] 2025-07-07 12:07:08,519 | INFO     | ***************************************
[2025-07-07 05:07:41] 2025-07-07 12:07:08,519 | INFO     | 
[2025-07-07 05:07:41] 2025-07-07 12:07:08,532 | INFO     | architecture information:
[2025-07-07 05:07:41] 2025-07-07 12:07:08,532 | INFO     | executing command: cat /etc/os-release
[2025-07-07 05:07:41] 2025-07-07 12:07:08,540 | INFO     | cat /etc/os-release:
[2025-07-07 05:07:41] NAME="CentOS Linux"
[2025-07-07 05:07:41] VERSION="7 (Core)"
[2025-07-07 05:07:41] ID="centos"
[2025-07-07 05:07:41] ID_LIKE="rhel fedora"
[2025-07-07 05:07:41] VERSION_ID="7"
[2025-07-07 05:07:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-07 05:07:41] ANSI_COLOR="0;31"
[2025-07-07 05:07:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-07 05:07:41] HOME_URL="https://www.centos.org/"
[2025-07-07 05:07:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-07 05:07:41] 
[2025-07-07 05:07:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-07 05:07:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-07 05:07:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-07 05:07:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-07 05:07:41] 
[2025-07-07 05:07:41] 2025-07-07 12:07:08,540 | INFO     | ***************************************
[2025-07-07 05:07:41] 2025-07-07 12:07:09,043 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-07 05:07:41] 2025-07-07 12:07:09,058 | INFO     | sufficient remaining disk space (2245351440384 B)
[2025-07-07 05:07:41] 2025-07-07 12:07:09,058 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-07 05:07:41] 2025-07-07 12:07:09,058 | INFO     | current server update state: UPDATING_FINAL
[2025-07-07 05:07:41] 2025-07-07 12:07:09,058 | INFO     | update_server=False
[2025-07-07 05:07:41] 2025-07-07 12:07:09,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-07 05:07:41] 2025-07-07 12:07:09,058 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-07 05:07:41] 2025-07-07 12:07:09,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-07 05:07:41] 2025-07-07 12:07:09,196 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-07 05:07:41] 2025-07-07 12:07:09,196 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-07 05:07:41] 2025-07-07 12:07:09,196 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-07 05:07:41] 2025-07-07 12:07:09,196 | INFO     | will abort loop
[2025-07-07 05:07:41] 2025-07-07 12:07:09,382 | INFO     | all data control threads have been joined
[2025-07-07 05:07:41] 2025-07-07 12:07:09,968 | INFO     | all payload control threads have been joined
[2025-07-07 05:07:41] 2025-07-07 12:07:10,066 | INFO     | [job] queue monitor thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:10,066 | INFO     | [job] retrieve thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:10,202 | INFO     | [job] job monitor thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:10,389 | INFO     | [data] control thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:10,674 | INFO     | all job control threads have been joined
[2025-07-07 05:07:41] 2025-07-07 12:07:10,704 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:10,766 | INFO     | [job] validate thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:10,974 | INFO     | [payload] control thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:11,008 | INFO     | [payload] execute_payloads thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:11,015 | INFO     | [payload] validate_post thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:11,064 | INFO     | [data] copytool_out thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:11,079 | INFO     | [job] create_data_payload thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:11,161 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-07 05:07:41] 2025-07-07 12:07:11,168 | INFO     | [data] copytool_in thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:11,183 | INFO     | [payload] validate_pre thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:11,585 | INFO     | [payload] failed_post thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:11,679 | INFO     | [job] control thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:15,174 | INFO     | [data] queue_monitor thread has finished
[2025-07-07 05:07:41] 2025-07-07 12:07:15,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140052295743296)>', '<ExcThread(monitor, started 140051769980672)>']
[2025-07-07 05:07:41] 2025-07-07 12:07:20,754 | INFO     | all workflow threads have been joined
[2025-07-07 05:07:41] 2025-07-07 12:07:20,754 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-07 05:07:41] 2025-07-07 12:07:20,755 | INFO     | traces error code: 0
[2025-07-07 05:07:41] 2025-07-07 12:07:20,755 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-07 05:07:41] 2025-07-07 12:07:40,158 | INFO     | PID=3523217 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-07 05:07:41] 2025-07-07 12:07:40,158 | INFO     | .. there are 33 such processes running
[2025-07-07 05:07:41] 2025-07-07 12:07:40,158 | INFO     | found 0 job(s) in 20 queues
[2025-07-07 05:07:41] 2025-07-07 12:07:40,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-07 05:07:41] 2025-07-07 12:07:40,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-07 05:07:41] 2025-07-07 12:07:40,159 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-07 05:07:41] 2025-07-07 12:07:40,159 | CRITICAL | thread 'MainThread' is not alive
[2025-07-07 05:07:41] 2025-07-07 12:07:40,159 | INFO     | [monitor] control thread has ended
[2025-07-07 05:07:41] 2025-07-07 12:07:40,765 [wrapper] ==== pilot stdout END ====
[2025-07-07 05:07:41] 2025-07-07 12:07:40,775 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-07 05:07:41] 2025-07-07 12:07:40,806 [wrapper] pilotpid: 3523217
[2025-07-07 05:07:41] 2025-07-07 12:07:40,838 [wrapper] Pilot exit status: 0
[2025-07-07 05:07:41] 2025-07-07 12:07:40,933 [wrapper] pandaids: 6721880154
[2025-07-07 05:07:41] 2025-07-07 12:07:40,980 [wrapper] cleanup supervisor_pilot 3523223 3523218
[2025-07-07 05:07:41] 2025-07-07 12:07:41,012 [wrapper] Test setup, not cleaning
[2025-07-07 05:07:41] 2025-07-07 12:07:41,014 [wrapper] apfmon messages muted
[2025-07-07 05:07:41] 2025-07-07 12:07:41,033 [wrapper] ==== wrapper stdout END ====
[2025-07-07 05:07:41] 2025-07-07 12:07:41,038 [wrapper] ==== wrapper stderr END ====
[2025-07-07 05:07:41]  *** Error codes and diagnostics ***
[2025-07-07 05:07:41]     "exeErrorCode": 65,
[2025-07-07 05:07:41]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-07 05:07:41]     "pilotErrorCode": 1305,
[2025-07-07 05:07:41]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-07 05:07:41]  *** Listing of results directory ***
[2025-07-07 05:07:41] total 312896
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc    530466 Jul  7 02:46 pilot3.tar.gz
[2025-07-07 05:07:41] -rwx------. 1 boinc boinc     36292 Jul  7 03:04 runpilot2-wrapper.sh
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc      5112 Jul  7 03:04 queuedata.json
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc       100 Jul  7 05:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-07 05:07:41] -rwxr-xr-x. 1 boinc boinc      7986 Jul  7 05:03 run_atlas
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc       105 Jul  7 05:03 job.xml
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc      6613 Jul  7 05:03 init_data.xml
[2025-07-07 05:07:41] -rw-r--r--. 2 boinc boinc 316353310 Jul  7 05:03 EVNT.45482038._000329.pool.root.1
[2025-07-07 05:07:41] -rw-r--r--. 2 boinc boinc     15095 Jul  7 05:03 start_atlas.sh
[2025-07-07 05:07:41] drwxrwx--x. 2 boinc boinc      4096 Jul  7 05:03 shared
[2025-07-07 05:07:41] -rw-r--r--. 2 boinc boinc    542885 Jul  7 05:03 input.tar.gz
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc         0 Jul  7 05:03 boinc_lockfile
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc      2544 Jul  7 05:03 pandaJob.out
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc    970740 Jul  7 05:03 agis_schedconf.cvmfs.json
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc   1573983 Jul  7 05:03 agis_ddmendpoints.agis.ALL.json
[2025-07-07 05:07:41] drwx------. 4 boinc boinc      4096 Jul  7 05:03 pilot3
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc       522 Jul  7 05:04 boinc_task_state.xml
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc       963 Jul  7 05:05 memory_monitor_summary.json
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc     21323 Jul  7 05:05 log.45482040._008299.job.log.tgz.1
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc      8399 Jul  7 05:07 heartbeat.json
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc      8192 Jul  7 05:07 boinc_mmap_file
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc        22 Jul  7 05:07 wrapper_checkpoint.txt
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc        95 Jul  7 05:07 pilot_heartbeat.json
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc       893 Jul  7 05:07 pilotlog.txt
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc     78635 Jul  7 05:07 log.45482040._008299.job.log.1
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc       188 Jul  7 05:07 output.list
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc       620 Jul  7 05:07 runtime_log
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc    122880 Jul  7 05:07 result.tar.gz
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc      8650 Jul  7 05:07 runtime_log.err
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc       645 Jul  7 05:07 K6SNDmlsxs7n9Rq4apOajLDm4fhM0noT9bVof3QYDmGMsKDmENmKXo.diag
[2025-07-07 05:07:41] -rw-r--r--. 1 boinc boinc     21977 Jul  7 05:07 stderr.txt
[2025-07-07 05:07:41] No HITS result produced
[2025-07-07 05:07:41]  *** Contents of shared directory: ***
[2025-07-07 05:07:41] total 309612
[2025-07-07 05:07:41] -rw-r--r--. 2 boinc boinc 316353310 Jul  7 05:03 ATLAS.root_0
[2025-07-07 05:07:41] -rw-r--r--. 2 boinc boinc     15095 Jul  7 05:03 start_atlas.sh
[2025-07-07 05:07:41] -rw-r--r--. 2 boinc boinc    542885 Jul  7 05:03 input.tar.gz
[2025-07-07 05:07:41] -rw-------. 1 boinc boinc    122880 Jul  7 05:07 result.tar.gz
05:07:42 (3519635): run_atlas exited; CPU time 19.729461
05:07:42 (3519635): called boinc_finish(0)

</stderr_txt>
]]>

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