Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:23:38 (250750): wrapper (7.7.26015): starting
21:23:38 (250750): wrapper: running run_atlas (--nthreads 4)
[2025-07-11 21:23:38] Arguments: --nthreads 4
[2025-07-11 21:23:38] Threads: 4
[2025-07-11 21:23:38] Checking for CVMFS
[2025-07-11 21:23:38] No cvmfs_config command found, will try listing directly
[2025-07-11 21:23:38] CVMFS is ok
[2025-07-11 21:23:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-11 21:23:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-11 21:23:38] Further information can be found at the LHC@home message board.
[2025-07-11 21:23:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-11 21:23:38] Checking for apptainer binary...
[2025-07-11 21:23:38] which: no apptainer in ((null))
[2025-07-11 21:23:38] apptainer is not installed, using version from CVMFS
[2025-07-11 21:23:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-11 21:23:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut30.grid.cesnet.cz
[2025-07-11 21:23:38] apptainer works
[2025-07-11 21:23:38] Set ATHENA_PROC_NUMBER=4
[2025-07-11 21:23:38] Set ATHENA_CORE_NUMBER=4
[2025-07-11 21:23:38] Starting ATLAS job with PandaID=6721433319
[2025-07-11 21:23:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:11:26 (296429): wrapper (7.7.26015): starting
22:11:26 (296429): wrapper: running run_atlas (--nthreads 4)
[2025-07-11 22:11:26] Arguments: --nthreads 4
[2025-07-11 22:11:26] Threads: 4
[2025-07-11 22:11:26] This job has been restarted, cleaning up previous attempt
[2025-07-11 22:11:26] Checking for CVMFS
[2025-07-11 22:11:26] No cvmfs_config command found, will try listing directly
[2025-07-11 22:11:26] CVMFS is ok
[2025-07-11 22:11:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-11 22:11:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-11 22:11:26] Further information can be found at the LHC@home message board.
[2025-07-11 22:11:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-11 22:11:26] Checking for apptainer binary...
[2025-07-11 22:11:26] which: no apptainer in ((null))
[2025-07-11 22:11:26] apptainer is not installed, using version from CVMFS
[2025-07-11 22:11:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-11 22:11:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut30.grid.cesnet.cz
[2025-07-11 22:11:26] apptainer works
[2025-07-11 22:11:26] Set ATHENA_PROC_NUMBER=4
[2025-07-11 22:11:26] Set ATHENA_CORE_NUMBER=4
[2025-07-11 22:11:26] Starting ATLAS job with PandaID=6721433319
[2025-07-11 22:11:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-12 01:33:32]  *** The last 200 lines of the pilot log: ***
[2025-07-12 01:33:32] 2025-07-11 23:32:59,748 | INFO     | monitor loop #900: job 0:6721433319 is in state 'finished'
[2025-07-12 01:33:32] 2025-07-11 23:32:59,748 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-12 01:33:32] 2025-07-11 23:33:00,006 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-12 01:33:32] 2025-07-11 23:33:00,010 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2705.513725
[2025-07-12 01:33:32] 2025-07-11 23:33:00,014 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6721433319/memory_monitor_summary.json (trf name=prmon)
[2025-07-12 01:33:32] 2025-07-11 23:33:00,015 | INFO     | extracted standard info from prmon json
[2025-07-12 01:33:32] 2025-07-11 23:33:00,015 | INFO     | extracted standard memory fields from prmon json
[2025-07-12 01:33:32] 2025-07-11 23:33:00,015 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-12 01:33:32] 2025-07-11 23:33:00,015 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-12 01:33:32] 2025-07-11 23:33:00,015 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-12 01:33:32] 2025-07-11 23:33:00,018 | INFO     | fitting pss+swap vs Time
[2025-07-12 01:33:32] 2025-07-11 23:33:00,018 | INFO     | sum of square deviations: 2406926989.5
[2025-07-12 01:33:32] 2025-07-11 23:33:00,019 | INFO     | sum of deviations: -5299033857.500002
[2025-07-12 01:33:32] 2025-07-11 23:33:00,019 | INFO     | mean x: 1752270727.5
[2025-07-12 01:33:32] 2025-07-11 23:33:00,019 | INFO     | mean y: 2399603.0757575757
[2025-07-12 01:33:32] 2025-07-11 23:33:00,019 | INFO     | -- intersect: 3860157629.4035687
[2025-07-12 01:33:32] 2025-07-11 23:33:00,019 | INFO     | intersect: 3860157629.4035687
[2025-07-12 01:33:32] 2025-07-11 23:33:00,019 | INFO     | chi2: 1.3446777233893308
[2025-07-12 01:33:32] 2025-07-11 23:33:00,019 | INFO     | sum of square deviations: 2229146912.0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,020 | INFO     | sum of deviations: -4724257850.000005
[2025-07-12 01:33:32] 2025-07-11 23:33:00,020 | INFO     | mean x: 1752270575.0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,020 | INFO     | mean y: 2400096.4715025905
[2025-07-12 01:33:32] 2025-07-11 23:33:00,020 | INFO     | -- intersect: 3716008192.3329625
[2025-07-12 01:33:32] 2025-07-11 23:33:00,021 | INFO     | intersect: 3716008192.3329625
[2025-07-12 01:33:32] 2025-07-11 23:33:00,021 | INFO     | chi2: 1.3449812106396224
[2025-07-12 01:33:32] 2025-07-11 23:33:00,021 | INFO     | current chi2=1.3449812106396224 (change=-0.02256951572951297 %)
[2025-07-12 01:33:32] 2025-07-11 23:33:00,021 | INFO     | right removable region: 192
[2025-07-12 01:33:32] 2025-07-11 23:33:00,021 | INFO     | sum of square deviations: 2229146912.0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,022 | INFO     | sum of deviations: -30833081533.0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,022 | INFO     | mean x: 1752270880.0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,022 | INFO     | mean y: 2421228.7357512955
[2025-07-12 01:33:32] 2025-07-11 23:33:00,022 | INFO     | -- intersect: 24239455862.9706
[2025-07-12 01:33:32] 2025-07-11 23:33:00,022 | INFO     | intersect: 24239455862.9706
[2025-07-12 01:33:32] 2025-07-11 23:33:00,022 | INFO     | chi2: 0.0503845699589914
[2025-07-12 01:33:32] 2025-07-11 23:33:00,022 | INFO     | current chi2=0.0503845699589914 (change=96.2530375061175 %)
[2025-07-12 01:33:32] 2025-07-11 23:33:00,023 | INFO     | sum of square deviations: 2060343747.0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,023 | INFO     | sum of deviations: -30151753165.5
[2025-07-12 01:33:32] 2025-07-11 23:33:00,023 | INFO     | mean x: 1752271032.5
[2025-07-12 01:33:32] 2025-07-11 23:33:00,023 | INFO     | mean y: 2420608.675531915
[2025-07-12 01:33:32] 2025-07-11 23:33:00,023 | INFO     | -- intersect: 25645735578.77495
[2025-07-12 01:33:32] 2025-07-11 23:33:00,024 | INFO     | intersect: 25645735578.77495
[2025-07-12 01:33:32] 2025-07-11 23:33:00,024 | INFO     | chi2: 0.04747150884274904
[2025-07-12 01:33:32] 2025-07-11 23:33:00,024 | INFO     | current chi2=0.04747150884274904 (change=5.781653229576699 %)
[2025-07-12 01:33:32] 2025-07-11 23:33:00,024 | INFO     | left removable region: 20
[2025-07-12 01:33:32] 2025-07-11 23:33:00,024 | INFO     | sum of square deviations: 1577789583.0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,025 | INFO     | sum of deviations: -25417566101.499996
[2025-07-12 01:33:32] 2025-07-11 23:33:00,025 | INFO     | mean x: 1752271154.5
[2025-07-12 01:33:32] 2025-07-11 23:33:00,025 | INFO     | mean y: 2418411.226744186
[2025-07-12 01:33:32] 2025-07-11 23:33:00,025 | INFO     | -- intersect: 28230813614.95871
[2025-07-12 01:33:32] 2025-07-11 23:33:00,025 | INFO     | intersect: 28230813614.95871
[2025-07-12 01:33:32] 2025-07-11 23:33:00,025 | INFO     | chi2: 0.0444251337235837
[2025-07-12 01:33:32] 2025-07-11 23:33:00,025 | INFO     | -- intersect: 28230813614.95871
[2025-07-12 01:33:32] 2025-07-11 23:33:00,025 | INFO     | current memory leak: -16.11 B/s (using 172 data points, chi2=0.04)
[2025-07-12 01:33:32] 2025-07-11 23:33:00,026 | INFO     | could have reported an average CPU frequency of 2569 MHz (10 samples)
[2025-07-12 01:33:32] 2025-07-11 23:33:00,026 | INFO     | ..............................
[2025-07-12 01:33:32] 2025-07-11 23:33:00,026 | INFO     | . Timing measurements:
[2025-07-12 01:33:32] 2025-07-11 23:33:00,026 | INFO     | . get job = 0 s
[2025-07-12 01:33:32] 2025-07-11 23:33:00,026 | INFO     | . initial setup = 1 s
[2025-07-12 01:33:32] 2025-07-11 23:33:00,026 | INFO     | . payload setup = 5 s
[2025-07-12 01:33:32] 2025-07-11 23:33:00,026 | INFO     | . stage-in = 0 s
[2025-07-12 01:33:32] 2025-07-11 23:33:00,026 | INFO     | . payload execution = 12055 s
[2025-07-12 01:33:32] 2025-07-11 23:33:00,026 | INFO     | . stage-out = 0 s
[2025-07-12 01:33:32] 2025-07-11 23:33:00,026 | INFO     | . log creation = 0 s
[2025-07-12 01:33:32] 2025-07-11 23:33:00,026 | INFO     | ..............................
[2025-07-12 01:33:32] 2025-07-11 23:33:00,084 | INFO     | 
[2025-07-12 01:33:32] 2025-07-11 23:33:00,084 | INFO     | job summary report
[2025-07-12 01:33:32] 2025-07-11 23:33:00,084 | INFO     | --------------------------------------------------
[2025-07-12 01:33:32] 2025-07-11 23:33:00,084 | INFO     | PanDA job id: 6721433319
[2025-07-12 01:33:32] 2025-07-11 23:33:00,084 | INFO     | task id: 45482148
[2025-07-12 01:33:32] 2025-07-11 23:33:00,084 | INFO     | errors: (none)
[2025-07-12 01:33:32] 2025-07-11 23:33:00,084 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-12 01:33:32] 2025-07-11 23:33:00,084 | INFO     | pilot state: finished 
[2025-07-12 01:33:32] 2025-07-11 23:33:00,084 | INFO     | transexitcode: 0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,085 | INFO     | exeerrorcode: 0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,085 | INFO     | exeerrordiag: 
[2025-07-12 01:33:32] 2025-07-11 23:33:00,085 | INFO     | exitcode: 0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,085 | INFO     | exitmsg: OK
[2025-07-12 01:33:32] 2025-07-11 23:33:00,085 | INFO     | cpuconsumptiontime: 46738 s
[2025-07-12 01:33:32] 2025-07-11 23:33:00,085 | INFO     | nevents: 400
[2025-07-12 01:33:32] 2025-07-11 23:33:00,085 | INFO     | neventsw: 0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,085 | INFO     | pid: 307264
[2025-07-12 01:33:32] 2025-07-11 23:33:00,085 | INFO     | pgrp: 307264
[2025-07-12 01:33:32] 2025-07-11 23:33:00,085 | INFO     | corecount: 4
[2025-07-12 01:33:32] 2025-07-11 23:33:00,085 | INFO     | event service: False
[2025-07-12 01:33:32] 2025-07-11 23:33:00,086 | INFO     | sizes: {0: 2393587, 3: 2393849, 11: 2393877, 12063: 2423764, 12065: 2432840, 12070: 2432978}
[2025-07-12 01:33:32] 2025-07-11 23:33:00,086 | INFO     | --------------------------------------------------
[2025-07-12 01:33:32] 2025-07-11 23:33:00,086 | INFO     | 
[2025-07-12 01:33:32] 2025-07-11 23:33:00,086 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2025-07-12 01:33:32] 2025-07-11 23:33:00,098 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,098 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,098 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,098 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,098 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,099 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-12 01:33:32] 2025-07-11 23:33:00,100 | INFO     | job 6721433319 has completed (purged errors)
[2025-07-12 01:33:32] 2025-07-11 23:33:00,100 | INFO     | overall cleanup function is called
[2025-07-12 01:33:32] 2025-07-11 23:33:01,107 | INFO     | --- collectZombieJob: --- 10, [307264]
[2025-07-12 01:33:32] 2025-07-11 23:33:01,107 | INFO     | zombie collector waiting for pid 307264
[2025-07-12 01:33:32] 2025-07-11 23:33:01,107 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-12 01:33:32] 2025-07-11 23:33:01,107 | INFO     | collected zombie processes
[2025-07-12 01:33:32] 2025-07-11 23:33:01,107 | INFO     | will attempt to kill all subprocesses of pid=307264
[2025-07-12 01:33:32] 2025-07-11 23:33:01,243 | INFO     | process IDs to be killed: [307264] (in reverse order)
[2025-07-12 01:33:32] 2025-07-11 23:33:01,285 | WARNING  | found no corresponding commands to process id(s)
[2025-07-12 01:33:32] 2025-07-11 23:33:01,285 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-12 01:33:32] 2025-07-11 23:33:01,288 | INFO     | did not find any defunct processes belonging to 307264
[2025-07-12 01:33:32] 2025-07-11 23:33:01,291 | INFO     | did not find any defunct processes belonging to 307264
[2025-07-12 01:33:32] 2025-07-11 23:33:01,291 | INFO     | ready for new job
[2025-07-12 01:33:32] 2025-07-11 23:33:01,291 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-12 01:33:32] 2025-07-11 23:33:01,293 | INFO     | ***************************************
[2025-07-12 01:33:32] 2025-07-11 23:33:01,293 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-12 01:33:32] 2025-07-11 23:33:01,293 | INFO     | ***************************************
[2025-07-12 01:33:32] 2025-07-11 23:33:01,293 | INFO     | 
[2025-07-12 01:33:32] 2025-07-11 23:33:01,294 | INFO     | architecture information:
[2025-07-12 01:33:32] 2025-07-11 23:33:01,295 | INFO     | executing command: cat /etc/os-release
[2025-07-12 01:33:32] 2025-07-11 23:33:01,302 | INFO     | cat /etc/os-release:
[2025-07-12 01:33:32] NAME="CentOS Linux"
[2025-07-12 01:33:32] VERSION="7 (Core)"
[2025-07-12 01:33:32] ID="centos"
[2025-07-12 01:33:32] ID_LIKE="rhel fedora"
[2025-07-12 01:33:32] VERSION_ID="7"
[2025-07-12 01:33:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-12 01:33:32] ANSI_COLOR="0;31"
[2025-07-12 01:33:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-12 01:33:32] HOME_URL="https://www.centos.org/"
[2025-07-12 01:33:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-12 01:33:32] 
[2025-07-12 01:33:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-12 01:33:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-12 01:33:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-12 01:33:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-12 01:33:32] 
[2025-07-12 01:33:32] 2025-07-11 23:33:01,303 | INFO     | ***************************************
[2025-07-12 01:33:32] 2025-07-11 23:33:01,805 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2025-07-12 01:33:32] 2025-07-11 23:33:01,815 | INFO     | sufficient remaining disk space (1682758959104 B)
[2025-07-12 01:33:32] 2025-07-11 23:33:01,815 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-12 01:33:32] 2025-07-11 23:33:01,815 | INFO     | current server update state: UPDATING_FINAL
[2025-07-12 01:33:32] 2025-07-11 23:33:01,815 | INFO     | update_server=False
[2025-07-12 01:33:32] 2025-07-11 23:33:01,815 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-12 01:33:32] 2025-07-11 23:33:01,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-12 01:33:32] 2025-07-11 23:33:02,043 | INFO     | all data control threads have been joined
[2025-07-12 01:33:32] 2025-07-11 23:33:02,251 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-12 01:33:32] 2025-07-11 23:33:02,251 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-12 01:33:32] 2025-07-11 23:33:02,251 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-12 01:33:32] 2025-07-11 23:33:02,252 | INFO     | will abort loop
[2025-07-12 01:33:32] 2025-07-11 23:33:02,607 | INFO     | all payload control threads have been joined
[2025-07-12 01:33:32] 2025-07-11 23:33:02,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-12 01:33:32] 2025-07-11 23:33:02,625 | INFO     | all job control threads have been joined
[2025-07-12 01:33:32] 2025-07-11 23:33:02,820 | INFO     | [job] retrieve thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:02,821 | INFO     | [job] queue monitor thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:02,989 | INFO     | [job] create_data_payload thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:03,046 | INFO     | [data] control thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:03,143 | INFO     | [payload] validate_pre thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:03,154 | INFO     | [payload] failed_post thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:03,223 | INFO     | [data] copytool_in thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:03,257 | INFO     | [job] job monitor thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:03,405 | INFO     | [payload] execute_payloads thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:03,612 | INFO     | [payload] control thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:03,630 | INFO     | [job] control thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:03,842 | INFO     | [job] validate thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:04,022 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:04,062 | INFO     | [payload] validate_post thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:04,630 | INFO     | [data] copytool_out thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:05,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-12 01:33:32] 2025-07-11 23:33:09,185 | INFO     | [data] queue_monitor thread has finished
[2025-07-12 01:33:32] 2025-07-11 23:33:09,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22535837763392)>', '<ExcThread(monitor, started 22535601088256)>']
[2025-07-12 01:33:32] 2025-07-11 23:33:14,468 | INFO     | all workflow threads have been joined
[2025-07-12 01:33:32] 2025-07-11 23:33:14,468 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-12 01:33:32] 2025-07-11 23:33:14,468 | INFO     | traces error code: 0
[2025-07-12 01:33:32] 2025-07-11 23:33:14,468 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-12 01:33:32] 2025-07-11 23:33:32,423 | INFO     | PID=300394 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-12 01:33:32] 2025-07-11 23:33:32,423 | INFO     | .. there are 3 such processes running
[2025-07-12 01:33:32] 2025-07-11 23:33:32,424 | INFO     | found 0 job(s) in 20 queues
[2025-07-12 01:33:32] 2025-07-11 23:33:32,424 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-12 01:33:32] 2025-07-11 23:33:32,424 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-12 01:33:32] 2025-07-11 23:33:32,424 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-12 01:33:32] 2025-07-11 23:33:32,424 | INFO     | [monitor] control thread has ended
[2025-07-12 01:33:32] 2025-07-11 23:33:32,507 [wrapper] ==== pilot stdout END ====
[2025-07-12 01:33:32] 2025-07-11 23:33:32,509 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-12 01:33:32] 2025-07-11 23:33:32,511 [wrapper] pilotpid: 300394
[2025-07-12 01:33:32] 2025-07-11 23:33:32,512 [wrapper] Pilot exit status: 0
[2025-07-12 01:33:32] 2025-07-11 23:33:32,518 [wrapper] pandaids: 6721433319 6721433319
[2025-07-12 01:33:32] 2025-07-11 23:33:32,544 [wrapper] cleanup supervisor_pilot  472918 300395
[2025-07-12 01:33:32] 2025-07-11 23:33:32,546 [wrapper] Test setup, not cleaning
[2025-07-12 01:33:32] 2025-07-11 23:33:32,548 [wrapper] apfmon messages muted
[2025-07-12 01:33:32] 2025-07-11 23:33:32,550 [wrapper] ==== wrapper stdout END ====
[2025-07-12 01:33:32] 2025-07-11 23:33:32,551 [wrapper] ==== wrapper stderr END ====
[2025-07-12 01:33:32]  *** Error codes and diagnostics ***
[2025-07-12 01:33:32]     "exeErrorCode": 0,
[2025-07-12 01:33:32]     "exeErrorDiag": "",
[2025-07-12 01:33:32]     "pilotErrorCode": 0,
[2025-07-12 01:33:32]     "pilotErrorDiag": "",
[2025-07-12 01:33:32]  *** Listing of results directory ***
[2025-07-12 01:33:32] total 887356
[2025-07-12 01:33:32] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc    530466 Jul  7 09:10 pilot3.tar.gz
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc      5112 Jul  7 09:15 queuedata.json
[2025-07-12 01:33:32] -rwx------ 1 boinc boinc     36292 Jul  7 09:17 runpilot2-wrapper.sh
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc       100 Jul 11 20:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-12 01:33:32] -rwxr-xr-x 1 boinc boinc      7986 Jul 11 20:55 run_atlas
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc       105 Jul 11 20:55 job.xml
[2025-07-12 01:33:32] -rw-r--r-- 3 boinc boinc 319347244 Jul 11 21:23 EVNT.45482146._000603.pool.root.1
[2025-07-12 01:33:32] -rw-r--r-- 3 boinc boinc 319347244 Jul 11 21:23 ATLAS.root_0
[2025-07-12 01:33:32] drwxrwx--x 2 boinc boinc      4096 Jul 11 21:23 shared
[2025-07-12 01:33:32] -rw-r--r-- 2 boinc boinc    542903 Jul 11 21:23 input.tar.gz
[2025-07-12 01:33:32] -rw-r--r-- 2 boinc boinc     15095 Jul 11 21:23 start_atlas.sh
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc         0 Jul 11 21:23 boinc_lockfile
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc      2617 Jul 11 22:11 pandaJob.out
[2025-07-12 01:33:32] -rw------- 1 boinc boinc    976215 Jul 11 22:11 agis_schedconf.cvmfs.json
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc      6424 Jul 11 22:12 init_data.xml
[2025-07-12 01:33:32] -rw------- 1 boinc boinc 263134583 Jul 12 01:32 HITS.45482148._015140.pool.root.1
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc       531 Jul 12 01:32 boinc_task_state.xml
[2025-07-12 01:33:32] -rw------- 1 boinc boinc      1034 Jul 12 01:32 memory_monitor_summary.json
[2025-07-12 01:33:32] -rw------- 1 boinc boinc   1588641 Jul 12 01:32 agis_ddmendpoints.agis.ALL.json
[2025-07-12 01:33:32] -rw------- 1 boinc boinc    328270 Jul 12 01:32 log.45482148._015140.job.log.tgz.1
[2025-07-12 01:33:32] -rw------- 1 boinc boinc      7834 Jul 12 01:33 heartbeat.json
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc      8192 Jul 12 01:33 boinc_mmap_file
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc        28 Jul 12 01:33 wrapper_checkpoint.txt
[2025-07-12 01:33:32] -rw------- 1 boinc boinc       821 Jul 12 01:33 pilotlog.txt
[2025-07-12 01:33:32] -rw------- 1 boinc boinc        97 Jul 12 01:33 pilot_heartbeat.json
[2025-07-12 01:33:32] -rw------- 1 boinc boinc   1143570 Jul 12 01:33 log.45482148._015140.job.log.1
[2025-07-12 01:33:32] -rw------- 1 boinc boinc       357 Jul 12 01:33 output.list
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc       620 Jul 12 01:33 runtime_log
[2025-07-12 01:33:32] -rw------- 1 boinc boinc   1495040 Jul 12 01:33 result.tar.gz
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc      9104 Jul 12 01:33 runtime_log.err
[2025-07-12 01:33:32] -rw------- 1 boinc boinc       790 Jul 12 01:33 MxYLDmLHvs7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmClELDmQRiAcm.diag
[2025-07-12 01:33:32] -rw-r--r-- 1 boinc boinc     22808 Jul 12 01:33 stderr.txt
[2025-07-12 01:33:32] HITS file was successfully produced:
[2025-07-12 01:33:32] -rw------- 1 boinc boinc 263134583 Jul 12 01:32 shared/HITS.pool.root.1
[2025-07-12 01:33:32]  *** Contents of shared directory: ***
[2025-07-12 01:33:32] total 570848
[2025-07-12 01:33:32] -rw-r--r-- 3 boinc boinc 319347244 Jul 11 21:23 ATLAS.root_0
[2025-07-12 01:33:32] -rw-r--r-- 2 boinc boinc    542903 Jul 11 21:23 input.tar.gz
[2025-07-12 01:33:32] -rw-r--r-- 2 boinc boinc     15095 Jul 11 21:23 start_atlas.sh
[2025-07-12 01:33:32] -rw------- 1 boinc boinc 263134583 Jul 12 01:32 HITS.pool.root.1
[2025-07-12 01:33:32] -rw------- 1 boinc boinc   1495040 Jul 12 01:33 result.tar.gz
01:33:34 (296429): run_atlas exited; CPU time 46992.014699
01:33:34 (296429): called boinc_finish(0)

</stderr_txt>
]]>

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