Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:12:30 (893153): wrapper (7.7.26015): starting
07:12:30 (893153): wrapper: running run_atlas (--nthreads 4)
[2025-07-12 07:12:30] Arguments: --nthreads 4
[2025-07-12 07:12:30] Threads: 4
[2025-07-12 07:12:30] Checking for CVMFS
[2025-07-12 07:12:30] No cvmfs_config command found, will try listing directly
[2025-07-12 07:12:30] CVMFS is ok
[2025-07-12 07:12:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-12 07:12:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-12 07:12:30] Further information can be found at the LHC@home message board.
[2025-07-12 07:12:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-12 07:12:30] Checking for apptainer binary...
[2025-07-12 07:12:30] which: no apptainer in ((null))
[2025-07-12 07:12:30] apptainer is not installed, using version from CVMFS
[2025-07-12 07:12:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-12 07:12:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2025-07-12 07:12:30] apptainer works
[2025-07-12 07:12:30] Set ATHENA_PROC_NUMBER=4
[2025-07-12 07:12:30] Set ATHENA_CORE_NUMBER=4
[2025-07-12 07:12:30] Starting ATLAS job with PandaID=6721337982
[2025-07-12 07:12:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-12 10:11:17]  *** The last 200 lines of the pilot log: ***
[2025-07-12 10:11:17] 2025-07-12 08:10:43,161 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6721337982/memory_monitor_summary.json (trf name=prmon)
[2025-07-12 10:11:17] 2025-07-12 08:10:43,272 | INFO     | number of running child processes to parent process 903585: 1
[2025-07-12 10:11:17] 2025-07-12 08:10:43,272 | INFO     | maximum number of monitored processes: 6
[2025-07-12 10:11:17] 2025-07-12 08:10:44,906 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-12 10:11:17] 2025-07-12 08:10:44,910 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2874.82375
[2025-07-12 10:11:17] 2025-07-12 08:10:44,914 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6721337982/memory_monitor_summary.json (trf name=prmon)
[2025-07-12 10:11:17] 2025-07-12 08:10:44,914 | INFO     | extracted standard info from prmon json
[2025-07-12 10:11:17] 2025-07-12 08:10:44,914 | INFO     | extracted standard memory fields from prmon json
[2025-07-12 10:11:17] 2025-07-12 08:10:44,915 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-12 10:11:17] 2025-07-12 08:10:44,915 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-12 10:11:17] 2025-07-12 08:10:44,915 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-12 10:11:17] 2025-07-12 08:10:44,917 | INFO     | fitting pss+swap vs Time
[2025-07-12 10:11:17] 2025-07-12 08:10:44,917 | INFO     | sum of square deviations: 1661798600.0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,918 | INFO     | sum of deviations: -235559673.99999917
[2025-07-12 10:11:17] 2025-07-12 08:10:44,918 | INFO     | mean x: 1752302484.0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,918 | INFO     | mean y: 2454980.4514285713
[2025-07-12 10:11:17] 2025-07-12 08:10:44,918 | INFO     | -- intersect: 250843564.89266518
[2025-07-12 10:11:17] 2025-07-12 08:10:44,918 | INFO     | intersect: 250843564.89266518
[2025-07-12 10:11:17] 2025-07-12 08:10:44,918 | INFO     | chi2: 1.193974132507456
[2025-07-12 10:11:17] 2025-07-12 08:10:44,919 | INFO     | sum of square deviations: 1523386702.5
[2025-07-12 10:11:17] 2025-07-12 08:10:44,919 | INFO     | sum of deviations: 221867919.00000033
[2025-07-12 10:11:17] 2025-07-12 08:10:44,919 | INFO     | mean x: 1752302331.5
[2025-07-12 10:11:17] 2025-07-12 08:10:44,919 | INFO     | mean y: 2455484.8
[2025-07-12 10:11:17] 2025-07-12 08:10:44,919 | INFO     | -- intersect: -252751988.85769638
[2025-07-12 10:11:17] 2025-07-12 08:10:44,919 | INFO     | intersect: -252751988.85769638
[2025-07-12 10:11:17] 2025-07-12 08:10:44,920 | INFO     | chi2: 1.194624980470873
[2025-07-12 10:11:17] 2025-07-12 08:10:44,920 | INFO     | current chi2=1.194624980470873 (change=-0.05451106064167718 %)
[2025-07-12 10:11:17] 2025-07-12 08:10:44,920 | INFO     | right removable region: 169
[2025-07-12 10:11:17] 2025-07-12 08:10:44,920 | INFO     | sum of square deviations: 1523386702.5
[2025-07-12 10:11:17] 2025-07-12 08:10:44,920 | INFO     | sum of deviations: -17117865292.499998
[2025-07-12 10:11:17] 2025-07-12 08:10:44,921 | INFO     | mean x: 1752302636.5
[2025-07-12 10:11:17] 2025-07-12 08:10:44,921 | INFO     | mean y: 2473169.2529411763
[2025-07-12 10:11:17] 2025-07-12 08:10:44,921 | INFO     | -- intersect: 19692602034.15262
[2025-07-12 10:11:17] 2025-07-12 08:10:44,921 | INFO     | intersect: 19692602034.15262
[2025-07-12 10:11:17] 2025-07-12 08:10:44,921 | INFO     | chi2: 0.03070864874631987
[2025-07-12 10:11:17] 2025-07-12 08:10:44,921 | INFO     | current chi2=0.03070864874631987 (change=97.4280306490536 %)
[2025-07-12 10:11:17] 2025-07-12 08:10:44,921 | INFO     | sum of square deviations: 1392881930.0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,922 | INFO     | sum of deviations: -17468618556.0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,922 | INFO     | mean x: 1752302789.0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,922 | INFO     | mean y: 2473572.0606060605
[2025-07-12 10:11:17] 2025-07-12 08:10:44,922 | INFO     | -- intersect: 21978714598.93354
[2025-07-12 10:11:17] 2025-07-12 08:10:44,922 | INFO     | intersect: 21978714598.93354
[2025-07-12 10:11:17] 2025-07-12 08:10:44,922 | INFO     | chi2: 0.026160396867458833
[2025-07-12 10:11:17] 2025-07-12 08:10:44,922 | INFO     | current chi2=0.026160396867458833 (change=14.810980178364568 %)
[2025-07-12 10:11:17] 2025-07-12 08:10:44,922 | INFO     | left removable region: 20
[2025-07-12 10:11:17] 2025-07-12 08:10:44,922 | INFO     | sum of square deviations: 1025693650.0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,923 | INFO     | sum of deviations: -15203298888.0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,923 | INFO     | mean x: 1752302911.0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,923 | INFO     | mean y: 2473261.9597315434
[2025-07-12 10:11:17] 2025-07-12 08:10:44,923 | INFO     | -- intersect: 25975905873.388557
[2025-07-12 10:11:17] 2025-07-12 08:10:44,923 | INFO     | intersect: 25975905873.388557
[2025-07-12 10:11:17] 2025-07-12 08:10:44,923 | INFO     | chi2: 0.022678402994910214
[2025-07-12 10:11:17] 2025-07-12 08:10:44,923 | INFO     | -- intersect: 25975905873.388557
[2025-07-12 10:11:17] 2025-07-12 08:10:44,923 | INFO     | current memory leak: -14.82 B/s (using 149 data points, chi2=0.02)
[2025-07-12 10:11:17] 2025-07-12 08:10:44,924 | INFO     | could have reported an average CPU frequency of 2815 MHz (9 samples)
[2025-07-12 10:11:17] 2025-07-12 08:10:44,924 | INFO     | ..............................
[2025-07-12 10:11:17] 2025-07-12 08:10:44,924 | INFO     | . Timing measurements:
[2025-07-12 10:11:17] 2025-07-12 08:10:44,924 | INFO     | . get job = 0 s
[2025-07-12 10:11:17] 2025-07-12 08:10:44,924 | INFO     | . initial setup = 1 s
[2025-07-12 10:11:17] 2025-07-12 08:10:44,924 | INFO     | . payload setup = 4 s
[2025-07-12 10:11:17] 2025-07-12 08:10:44,924 | INFO     | . stage-in = 0 s
[2025-07-12 10:11:17] 2025-07-12 08:10:44,924 | INFO     | . payload execution = 10660 s
[2025-07-12 10:11:17] 2025-07-12 08:10:44,924 | INFO     | . stage-out = 0 s
[2025-07-12 10:11:17] 2025-07-12 08:10:44,925 | INFO     | . log creation = 0 s
[2025-07-12 10:11:17] 2025-07-12 08:10:44,925 | INFO     | ..............................
[2025-07-12 10:11:17] 2025-07-12 08:10:44,979 | INFO     | 
[2025-07-12 10:11:17] 2025-07-12 08:10:44,979 | INFO     | job summary report
[2025-07-12 10:11:17] 2025-07-12 08:10:44,979 | INFO     | --------------------------------------------------
[2025-07-12 10:11:17] 2025-07-12 08:10:44,979 | INFO     | PanDA job id: 6721337982
[2025-07-12 10:11:17] 2025-07-12 08:10:44,979 | INFO     | task id: 45482148
[2025-07-12 10:11:17] 2025-07-12 08:10:44,979 | INFO     | errors: (none)
[2025-07-12 10:11:17] 2025-07-12 08:10:44,979 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-12 10:11:17] 2025-07-12 08:10:44,979 | INFO     | pilot state: finished 
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | transexitcode: 0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | exeerrorcode: 0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | exeerrordiag: 
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | exitcode: 0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | exitmsg: OK
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | cpuconsumptiontime: 41441 s
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | nevents: 400
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | neventsw: 0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | pid: 903585
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | pgrp: 903585
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | corecount: 4
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | event service: False
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | sizes: {0: 2393587, 3: 2393849, 11: 2393877, 10668: 2423000, 10670: 2432076, 10675: 2432278}
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | --------------------------------------------------
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | 
[2025-07-12 10:11:17] 2025-07-12 08:10:44,980 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2025-07-12 10:11:17] 2025-07-12 08:10:44,994 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,994 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,994 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,994 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,994 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,994 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,994 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-12 10:11:17] 2025-07-12 08:10:44,995 | INFO     | job 6721337982 has completed (purged errors)
[2025-07-12 10:11:17] 2025-07-12 08:10:44,996 | INFO     | overall cleanup function is called
[2025-07-12 10:11:17] 2025-07-12 08:10:45,999 | INFO     | --- collectZombieJob: --- 10, [903585]
[2025-07-12 10:11:17] 2025-07-12 08:10:46,000 | INFO     | zombie collector waiting for pid 903585
[2025-07-12 10:11:17] 2025-07-12 08:10:46,000 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-12 10:11:17] 2025-07-12 08:10:46,000 | INFO     | collected zombie processes
[2025-07-12 10:11:17] 2025-07-12 08:10:46,000 | INFO     | will attempt to kill all subprocesses of pid=903585
[2025-07-12 10:11:17] 2025-07-12 08:10:46,114 | INFO     | process IDs to be killed: [903585] (in reverse order)
[2025-07-12 10:11:17] 2025-07-12 08:10:46,152 | WARNING  | found no corresponding commands to process id(s)
[2025-07-12 10:11:17] 2025-07-12 08:10:46,152 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-12 10:11:17] 2025-07-12 08:10:46,155 | INFO     | did not find any defunct processes belonging to 903585
[2025-07-12 10:11:17] 2025-07-12 08:10:46,157 | INFO     | did not find any defunct processes belonging to 903585
[2025-07-12 10:11:17] 2025-07-12 08:10:46,157 | INFO     | ready for new job
[2025-07-12 10:11:17] 2025-07-12 08:10:46,157 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-12 10:11:17] 2025-07-12 08:10:46,159 | INFO     | ***************************************
[2025-07-12 10:11:17] 2025-07-12 08:10:46,159 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-12 10:11:17] 2025-07-12 08:10:46,159 | INFO     | ***************************************
[2025-07-12 10:11:17] 2025-07-12 08:10:46,159 | INFO     | 
[2025-07-12 10:11:17] 2025-07-12 08:10:46,160 | INFO     | architecture information:
[2025-07-12 10:11:17] 2025-07-12 08:10:46,161 | INFO     | executing command: cat /etc/os-release
[2025-07-12 10:11:17] 2025-07-12 08:10:46,169 | INFO     | cat /etc/os-release:
[2025-07-12 10:11:17] NAME="CentOS Linux"
[2025-07-12 10:11:17] VERSION="7 (Core)"
[2025-07-12 10:11:17] ID="centos"
[2025-07-12 10:11:17] ID_LIKE="rhel fedora"
[2025-07-12 10:11:17] VERSION_ID="7"
[2025-07-12 10:11:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-12 10:11:17] ANSI_COLOR="0;31"
[2025-07-12 10:11:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-12 10:11:17] HOME_URL="https://www.centos.org/"
[2025-07-12 10:11:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-12 10:11:17] 
[2025-07-12 10:11:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-12 10:11:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-12 10:11:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-12 10:11:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-12 10:11:17] 
[2025-07-12 10:11:17] 2025-07-12 08:10:46,169 | INFO     | ***************************************
[2025-07-12 10:11:17] 2025-07-12 08:10:46,672 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2025-07-12 10:11:17] 2025-07-12 08:10:46,683 | INFO     | sufficient remaining disk space (1689195118592 B)
[2025-07-12 10:11:17] 2025-07-12 08:10:46,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-12 10:11:17] 2025-07-12 08:10:46,684 | INFO     | current server update state: UPDATING_FINAL
[2025-07-12 10:11:17] 2025-07-12 08:10:46,684 | INFO     | update_server=False
[2025-07-12 10:11:17] 2025-07-12 08:10:46,684 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-12 10:11:17] 2025-07-12 08:10:46,684 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-12 10:11:17] 2025-07-12 08:10:46,684 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-12 10:11:17] 2025-07-12 08:10:46,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-12 10:11:17] 2025-07-12 08:10:46,781 | INFO     | aborting loop
[2025-07-12 10:11:17] 2025-07-12 08:10:46,882 | INFO     | all data control threads have been joined
[2025-07-12 10:11:17] 2025-07-12 08:10:47,400 | INFO     | all payload control threads have been joined
[2025-07-12 10:11:17] 2025-07-12 08:10:47,689 | INFO     | [job] retrieve thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:47,690 | INFO     | [job] queue monitor thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:47,721 | INFO     | [job] create_data_payload thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:47,786 | INFO     | [job] job monitor thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:47,834 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-12 10:11:17] 2025-07-12 08:10:47,887 | INFO     | [data] control thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:47,894 | INFO     | [payload] validate_pre thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:48,048 | INFO     | all job control threads have been joined
[2025-07-12 10:11:17] 2025-07-12 08:10:48,056 | INFO     | [job] validate thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:48,405 | INFO     | [payload] control thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:48,535 | INFO     | [payload] execute_payloads thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:48,725 | INFO     | [payload] failed_post thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:48,912 | INFO     | [data] copytool_in thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:49,053 | INFO     | [job] control thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:49,191 | INFO     | [payload] validate_post thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:49,840 | INFO     | [data] copytool_out thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:50,690 | INFO     | [data] queue_monitor thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:57,674 | INFO     | job.realtimelogging is not enabled
[2025-07-12 10:11:17] 2025-07-12 08:10:58,680 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-12 10:11:17] 2025-07-12 08:10:58,744 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22436080572224)>', '<ExcThread(monitor, started 22435841668864)>']
[2025-07-12 10:11:17] 2025-07-12 08:11:03,769 | INFO     | all workflow threads have been joined
[2025-07-12 10:11:17] 2025-07-12 08:11:03,769 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-12 10:11:17] 2025-07-12 08:11:03,769 | INFO     | traces error code: 0
[2025-07-12 10:11:17] 2025-07-12 08:11:03,770 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-12 10:11:17] 2025-07-12 08:11:16,896 | INFO     | PID=896770 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-12 10:11:17] 2025-07-12 08:11:16,897 | INFO     | found 0 job(s) in 20 queues
[2025-07-12 10:11:17] 2025-07-12 08:11:16,897 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-12 10:11:17] 2025-07-12 08:11:16,897 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-12 10:11:17] 2025-07-12 08:11:16,897 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-12 10:11:17] 2025-07-12 08:11:16,897 | CRITICAL | thread 'MainThread' is not alive
[2025-07-12 10:11:17] 2025-07-12 08:11:16,897 | INFO     | [monitor] control thread has ended
[2025-07-12 10:11:17] 2025-07-12 08:11:16,975 [wrapper] ==== pilot stdout END ====
[2025-07-12 10:11:17] 2025-07-12 08:11:16,977 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-12 10:11:17] 2025-07-12 08:11:16,979 [wrapper] pilotpid: 896770
[2025-07-12 10:11:17] 2025-07-12 08:11:16,981 [wrapper] Pilot exit status: 0
[2025-07-12 10:11:17] 2025-07-12 08:11:16,989 [wrapper] pandaids: 6721337982
[2025-07-12 10:11:17] 2025-07-12 08:11:17,011 [wrapper] cleanup supervisor_pilot  979007 896771
[2025-07-12 10:11:17] 2025-07-12 08:11:17,013 [wrapper] Test setup, not cleaning
[2025-07-12 10:11:17] 2025-07-12 08:11:17,015 [wrapper] apfmon messages muted
[2025-07-12 10:11:17] 2025-07-12 08:11:17,016 [wrapper] ==== wrapper stdout END ====
[2025-07-12 10:11:17] 2025-07-12 08:11:17,018 [wrapper] ==== wrapper stderr END ====
[2025-07-12 10:11:17]  *** Error codes and diagnostics ***
[2025-07-12 10:11:17]     "exeErrorCode": 0,
[2025-07-12 10:11:17]     "exeErrorDiag": "",
[2025-07-12 10:11:17]     "pilotErrorCode": 0,
[2025-07-12 10:11:17]     "pilotErrorDiag": "",
[2025-07-12 10:11:17]  *** Listing of results directory ***
[2025-07-12 10:11:17] total 573924
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc    530466 Jul  7 07:37 pilot3.tar.gz
[2025-07-12 10:11:17] -rwx------ 1 boinc boinc     36292 Jul  7 07:46 runpilot2-wrapper.sh
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc      5112 Jul  7 07:46 queuedata.json
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc       100 Jul 12 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-12 10:11:17] -rwxr-xr-x 1 boinc boinc      7986 Jul 12 07:12 run_atlas
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc       105 Jul 12 07:12 job.xml
[2025-07-12 10:11:17] -rw-r--r-- 2 boinc boinc 321476900 Jul 12 07:12 EVNT.45482146._000538.pool.root.1
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc      6421 Jul 12 07:12 init_data.xml
[2025-07-12 10:11:17] drwxrwx--x 2 boinc boinc      4096 Jul 12 07:12 shared
[2025-07-12 10:11:17] -rw-r--r-- 2 boinc boinc    542911 Jul 12 07:12 input.tar.gz
[2025-07-12 10:11:17] -rw-r--r-- 2 boinc boinc     15095 Jul 12 07:12 start_atlas.sh
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc         0 Jul 12 07:12 boinc_lockfile
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc      2617 Jul 12 07:12 pandaJob.out
[2025-07-12 10:11:17] -rw------- 1 boinc boinc    976559 Jul 12 07:12 agis_schedconf.cvmfs.json
[2025-07-12 10:11:17] -rw------- 1 boinc boinc   1588641 Jul 12 07:12 agis_ddmendpoints.agis.ALL.json
[2025-07-12 10:11:17] drwx------ 4 boinc boinc      4096 Jul 12 07:12 pilot3
[2025-07-12 10:11:17] -rw------- 1 boinc boinc 259796165 Jul 12 10:10 HITS.45482148._013490.pool.root.1
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc       530 Jul 12 10:10 boinc_task_state.xml
[2025-07-12 10:11:17] -rw------- 1 boinc boinc      1023 Jul 12 10:10 memory_monitor_summary.json
[2025-07-12 10:11:17] -rw------- 1 boinc boinc    290191 Jul 12 10:10 log.45482148._013490.job.log.tgz.1
[2025-07-12 10:11:17] -rw------- 1 boinc boinc      7824 Jul 12 10:10 heartbeat.json
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc      8192 Jul 12 10:11 boinc_mmap_file
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc        28 Jul 12 10:11 wrapper_checkpoint.txt
[2025-07-12 10:11:17] -rw------- 1 boinc boinc       816 Jul 12 10:11 pilotlog.txt
[2025-07-12 10:11:17] -rw------- 1 boinc boinc        95 Jul 12 10:11 pilot_heartbeat.json
[2025-07-12 10:11:17] -rw------- 1 boinc boinc    988793 Jul 12 10:11 log.45482148._013490.job.log.1
[2025-07-12 10:11:17] -rw------- 1 boinc boinc       357 Jul 12 10:11 output.list
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc       620 Jul 12 10:11 runtime_log
[2025-07-12 10:11:17] -rw------- 1 boinc boinc   1300480 Jul 12 10:11 result.tar.gz
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc      9027 Jul 12 10:11 runtime_log.err
[2025-07-12 10:11:17] -rw------- 1 boinc boinc       663 Jul 12 10:11 YbQLDmNrts7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdTELDmqxKBun.diag
[2025-07-12 10:11:17] -rw-r--r-- 1 boinc boinc     20893 Jul 12 10:11 stderr.txt
[2025-07-12 10:11:17] HITS file was successfully produced:
[2025-07-12 10:11:17] -rw------- 1 boinc boinc 259796165 Jul 12 10:10 shared/HITS.pool.root.1
[2025-07-12 10:11:17]  *** Contents of shared directory: ***
[2025-07-12 10:11:17] total 569476
[2025-07-12 10:11:17] -rw-r--r-- 2 boinc boinc 321476900 Jul 12 07:12 ATLAS.root_0
[2025-07-12 10:11:17] -rw-r--r-- 2 boinc boinc    542911 Jul 12 07:12 input.tar.gz
[2025-07-12 10:11:17] -rw-r--r-- 2 boinc boinc     15095 Jul 12 07:12 start_atlas.sh
[2025-07-12 10:11:17] -rw------- 1 boinc boinc 259796165 Jul 12 10:10 HITS.pool.root.1
[2025-07-12 10:11:17] -rw------- 1 boinc boinc   1300480 Jul 12 10:11 result.tar.gz
10:11:18 (893153): run_atlas exited; CPU time 41594.712498
10:11:18 (893153): called boinc_finish(0)

</stderr_txt>
]]>

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