Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-11 23:06:16 (8316): Detected: vboxwrapper 26206
2025-07-11 23:06:16 (8316): Detected: BOINC client v8.0.2
2025-07-11 23:06:17 (8316): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-07-11 23:06:17 (8316): Successfully copied 'init_data.xml' to the shared directory.
2025-07-11 23:06:18 (8316): Create VM. (boinc_3e579c938cc98c49, slot#0)
2025-07-11 23:06:18 (8316): Setting Memory Size for VM. (4400MB)
2025-07-11 23:06:18 (8316): Setting CPU Count for VM. (4)
2025-07-11 23:06:19 (8316): Setting Chipset Options for VM.
2025-07-11 23:06:19 (8316): Setting Graphics Controller Options for VM.
2025-07-11 23:06:19 (8316): Setting Boot Options for VM.
2025-07-11 23:06:19 (8316): Setting Network Configuration for NAT.
2025-07-11 23:06:20 (8316): Enabling VM Network Access.
2025-07-11 23:06:20 (8316): Disabling USB Support for VM.
2025-07-11 23:06:20 (8316): Disabling COM Port Support for VM.
2025-07-11 23:06:20 (8316): Disabling LPT Port Support for VM.
2025-07-11 23:06:21 (8316): Disabling Audio Support for VM.
2025-07-11 23:06:21 (8316): Disabling Clipboard Support for VM.
2025-07-11 23:06:21 (8316): Disabling Drag and Drop Support for VM.
2025-07-11 23:06:21 (8316): Adding storage controller(s) to VM.
2025-07-11 23:06:22 (8316): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-11 23:06:22 (8316): Adding VirtualBox Guest Additions to VM.
2025-07-11 23:06:22 (8316): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-11 23:06:23 (8316): forwarding host port 58595 to guest port 80
2025-07-11 23:06:23 (8316): Enabling remote desktop for VM.
2025-07-11 23:06:23 (8316): Required extension pack not installed, remote desktop not enabled.
2025-07-11 23:06:23 (8316): Enabling shared directory for VM.
2025-07-11 23:06:24 (8316): Starting VM using VBoxManage interface. (boinc_3e579c938cc98c49, slot#0)
2025-07-11 23:06:28 (8316): Successfully started VM. (PID = '11200')
2025-07-11 23:06:28 (8316): Reporting VM Process ID to BOINC.
2025-07-11 23:06:28 (8316): Guest Log: BIOS: VirtualBox 6.1.34
2025-07-11 23:06:28 (8316): Guest Log: CPUID EDX: 0x178bfbff
2025-07-11 23:06:28 (8316): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-11 23:06:28 (8316): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-11 23:06:28 (8316): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-11 23:06:28 (8316): Detected: Web Application Enabled (http://localhost:58595)
2025-07-11 23:06:28 (8316): Preference change detected
2025-07-11 23:06:28 (8316): Setting CPU throttle for VM. (100%)
2025-07-11 23:06:28 (8316): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-11 23:06:30 (8316): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-11 23:06:30 (8316): Guest Log: BIOS: Booting from Hard Disk...
2025-07-11 23:06:33 (8316): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-11 23:06:33 (8316): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-11 23:06:33 (8316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-11 23:06:38 (8316): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-11 23:06:38 (8316): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-11 23:06:44 (8316): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-11 23:06:44 (8316): Guest Log: 00:00:00.000175 main     Log opened 2025-07-11T23:06:42.444308000Z
2025-07-11 23:06:44 (8316): Guest Log: 00:00:00.000277 main     OS Product: Linux
2025-07-11 23:06:44 (8316): Guest Log: 00:00:00.000303 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-11 23:06:44 (8316): Guest Log: 00:00:00.000324 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-11 23:06:44 (8316): Guest Log: 00:00:00.000345 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-11 23:06:44 (8316): Guest Log: 00:00:00.000346 main     Process ID: 1301
2025-07-11 23:06:44 (8316): Guest Log: 00:00:00.000346 main     Package type: LINUX_64BITS_GENERIC
2025-07-11 23:06:44 (8316): Guest Log: 00:00:00.001317 main     5.2.32 r132073 started. Verbose level = 0
2025-07-11 23:06:44 (8316): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-11 23:06:44 (8316): Guest Log: [INFO] Mounting shared directory
2025-07-11 23:06:44 (8316): Guest Log: [INFO] Checking for init_data.xml
2025-07-11 23:06:47 (8316): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-11 23:06:47 (8316): Guest Log: [INFO] Detected branch: prod
2025-07-11 23:06:47 (8316): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-11 23:06:47 (8316): Guest Log: Copying input files
2025-07-11 23:06:49 (8316): Guest Log: Copied input files into RunAtlas.
2025-07-11 23:06:49 (8316): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-11 23:06:49 (8316): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-11 23:06:49 (8316): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-11 23:06:49 (8316): Guest Log: Further information can be found at the LHC@home message board.
2025-07-11 23:06:54 (8316): Guest Log: 00:00:10.014122 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 961 752 000ns (GuestNow=1 752 268 013 485 732 000 ns GuestLast=1 752 275 202 447 484 000 ns fSetTimeLastLoop=true )
2025-07-11 23:06:58 (8316): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-11 23:06:58 (8316): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-11 23:06:58 (8316): Guest Log: 2.6.3.0 1577 0 30196 148217 3 1 3117618 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-11 23:07:00 (8316): Guest Log: copied the webapp to /var/www
2025-07-11 23:07:00 (8316): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-11 23:07:00 (8316): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-11 23:07:00 (8316): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-11 23:07:00 (8316): Guest Log:  *** Starting ATLAS job. (PandaID=6721085148 taskID=45482062) ***
2025-07-12 00:46:37 (8316): Status Report: Elapsed Time: '6000.000000'
2025-07-12 00:46:37 (8316): Status Report: CPU Time: '22075.359375'
2025-07-12 02:26:45 (8316): Status Report: Elapsed Time: '12000.000000'
2025-07-12 02:26:45 (8316): Status Report: CPU Time: '45726.046875'
2025-07-12 04:06:55 (8316): Status Report: Elapsed Time: '18000.000000'
2025-07-12 04:06:55 (8316): Status Report: CPU Time: '69371.140625'
2025-07-12 04:59:26 (8316): Guest Log:  *** Job finished ***
2025-07-12 04:59:26 (8316): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:12,768 | INFO     | all workflow threads have been joined
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:12,769 | INFO     | end of generic workflow (traces error code: 0)
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:12,769 | INFO     | traces error code: 0
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:12,769 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,046 | INFO     | PID=5899 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,047 | INFO     | found 0 job(s) in 20 queues
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,047 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,047 | INFO     | [monitor] control thread has ended
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,141 [wrapper] ==== pilot stdout END ====
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,146 [wrapper] ==== wrapper stdout RESUME ====
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,150 [wrapper] pilotpid: 5899
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,155 [wrapper] Pilot exit status: 0
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,203 [wrapper] pandaids: 6721085148
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,228 [wrapper] cleanup supervisor_pilot 24313 5900
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,233 [wrapper] Test setup, not cleaning
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,237 [wrapper] apfmon messages muted
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,241 [wrapper] ==== wrapper stdout END ====
2025-07-12 04:59:26 (8316): Guest Log: 2025-07-12 02:59:25,245 [wrapper] ==== wrapper stderr END ====
2025-07-12 04:59:26 (8316): Guest Log:  *** Error codes and diagnostics ***
2025-07-12 04:59:26 (8316): Guest Log:     "exeErrorCode": 0,
2025-07-12 04:59:26 (8316): Guest Log:     "exeErrorDiag": "",
2025-07-12 04:59:26 (8316): Guest Log:     "pilotErrorCode": 0,
2025-07-12 04:59:26 (8316): Guest Log:     "pilotErrorDiag": "",
2025-07-12 04:59:26 (8316): Guest Log:  *** Listing of results directory ***
2025-07-12 04:59:26 (8316): Guest Log: total 274008
2025-07-12 04:59:26 (8316): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul  7 01:02 pilot3.tar.gz
2025-07-12 04:59:26 (8316): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul  7 01:18 queuedata.json
2025-07-12 04:59:26 (8316): Guest Log: -rwx------. 1 atlas atlas     36292 Jul  7 01:19 runpilot2-wrapper.sh
2025-07-12 04:59:26 (8316): Guest Log: -rwxr-xr-x. 1 atlas atlas      9231 Jul 11 21:06 init_data.xml
2025-07-12 04:59:26 (8316): Guest Log: -rwxr-xr-x. 1 atlas atlas    542884 Jul 11 21:06 input.tar.gz
2025-07-12 04:59:26 (8316): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 11 21:06 start_atlas.sh
2025-07-12 04:59:26 (8316): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 11 21:06 EVNT.45482060._000538.pool.root.1 -> /data/./ATLAS.root_0
2025-07-12 04:59:26 (8316): Guest Log: -rw-r--r--. 1 atlas atlas      2534 Jul 11 21:06 pandaJob.out
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas    976207 Jul 11 21:07 agis_schedconf.cvmfs.json
2025-07-12 04:59:26 (8316): Guest Log: drwx------. 4 atlas atlas      4096 Jul 11 21:07 pilot3
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas 272542981 Jul 12 02:58 HITS.45482062._013452.pool.root.1
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas      1033 Jul 12 02:58 memory_monitor_summary.json
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas   1588641 Jul 12 02:58 agis_ddmendpoints.agis.ALL.json
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas    387912 Jul 12 02:58 log.45482062._013452.job.log.tgz.1
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas      7826 Jul 12 02:58 heartbeat.json
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas        95 Jul 12 02:58 pilot_heartbeat.json
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas       744 Jul 12 02:59 pilotlog.txt
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas   1736146 Jul 12 02:59 log.45482062._013452.job.log.1
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas       357 Jul 12 02:59 output.list
2025-07-12 04:59:26 (8316): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 12 02:59 runtime_log
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas   2140160 Jul 12 02:59 result.tar.gz
2025-07-12 04:59:26 (8316): Guest Log: -rw-r--r--. 1 atlas atlas      8600 Jul 12 02:59 runtime_log.err
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas       659 Jul 12 02:59 1adLDmIhps7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgkDLDmne2uxn.diag
2025-07-12 04:59:26 (8316): Guest Log: Looking for outputfile HITS.45482062._013452.pool.root.1
2025-07-12 04:59:26 (8316): Guest Log: HITS file was successfully produced
2025-07-12 04:59:26 (8316): Guest Log: -rw-------. 1 atlas atlas 272542981 Jul 12 02:58 /home/atlas/RunAtlas/HITS.45482062._013452.pool.root.1
2025-07-12 04:59:27 (8316): Guest Log: Successfully finished the ATLAS job!
2025-07-12 04:59:27 (8316): Guest Log: Copying the results back to the shared directory!
2025-07-12 04:59:27 (8316): Guest Log:  *** Contents of shared directory: ***
2025-07-12 04:59:27 (8316): Guest Log: total 583064
2025-07-12 04:59:27 (8316): Guest Log: -rwxrwxrwx. 1 root root 321795296 Jul 11 21:06 ATLAS.root_0
2025-07-12 04:59:27 (8316): Guest Log: -rwxrwxrwx. 1 root root 272542981 Jul 12 02:59 HITS.pool.root.1
2025-07-12 04:59:27 (8316): Guest Log: -rwxrwxrwx. 1 root root      9231 Jul 11 21:06 init_data.xml
2025-07-12 04:59:27 (8316): Guest Log: -rwxrwxrwx. 1 root root    542884 Jul  7 05:51 input.tar.gz
2025-07-12 04:59:27 (8316): Guest Log: -rwxrwxrwx. 1 root root   2140160 Jul 12 02:59 result.tar.gz
2025-07-12 04:59:27 (8316): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul  7 05:51 start_atlas.sh
2025-07-12 04:59:27 (8316): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-12 04:59:27 (8316): VM Completion File Detected.
2025-07-12 04:59:27 (8316): Powering off VM.
2025-07-12 04:59:28 (8316): Successfully stopped VM.
2025-07-12 04:59:28 (8316): Deregistering VM. (boinc_3e579c938cc98c49, slot#0)
2025-07-12 04:59:28 (8316): Removing network bandwidth throttle group from VM.
2025-07-12 04:59:28 (8316): Removing VM from VirtualBox.
04:59:33 (8316): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN