Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-11 23:05:42 (9440): Detected: vboxwrapper 26206
2025-07-11 23:05:42 (9440): Detected: BOINC client v8.0.2
2025-07-11 23:05:43 (9440): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-07-11 23:05:43 (9440): Successfully copied 'init_data.xml' to the shared directory.
2025-07-11 23:05:43 (9440): Create VM. (boinc_1e3c118dea4a8851, slot#2)
2025-07-11 23:05:44 (9440): Setting Memory Size for VM. (4400MB)
2025-07-11 23:05:44 (9440): Setting CPU Count for VM. (4)
2025-07-11 23:05:44 (9440): Setting Chipset Options for VM.
2025-07-11 23:05:45 (9440): Setting Graphics Controller Options for VM.
2025-07-11 23:05:45 (9440): Setting Boot Options for VM.
2025-07-11 23:05:45 (9440): Setting Network Configuration for NAT.
2025-07-11 23:05:45 (9440): Enabling VM Network Access.
2025-07-11 23:05:46 (9440): Disabling USB Support for VM.
2025-07-11 23:05:46 (9440): Disabling COM Port Support for VM.
2025-07-11 23:05:46 (9440): Disabling LPT Port Support for VM.
2025-07-11 23:05:46 (9440): Disabling Audio Support for VM.
2025-07-11 23:05:47 (9440): Disabling Clipboard Support for VM.
2025-07-11 23:05:47 (9440): Disabling Drag and Drop Support for VM.
2025-07-11 23:05:47 (9440): Adding storage controller(s) to VM.
2025-07-11 23:05:47 (9440): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-11 23:05:48 (9440): Adding VirtualBox Guest Additions to VM.
2025-07-11 23:05:48 (9440): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-11 23:05:48 (9440): forwarding host port 58569 to guest port 80
2025-07-11 23:05:49 (9440): Enabling remote desktop for VM.
2025-07-11 23:05:49 (9440): Required extension pack not installed, remote desktop not enabled.
2025-07-11 23:05:49 (9440): Enabling shared directory for VM.
2025-07-11 23:05:49 (9440): Starting VM using VBoxManage interface. (boinc_1e3c118dea4a8851, slot#2)
2025-07-11 23:05:54 (9440): Successfully started VM. (PID = '4528')
2025-07-11 23:05:54 (9440): Reporting VM Process ID to BOINC.
2025-07-11 23:05:54 (9440): Guest Log: BIOS: VirtualBox 6.1.34
2025-07-11 23:05:54 (9440): Guest Log: CPUID EDX: 0x178bfbff
2025-07-11 23:05:54 (9440): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-11 23:05:54 (9440): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-11 23:05:54 (9440): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-11 23:05:54 (9440): Detected: Web Application Enabled (http://localhost:58569)
2025-07-11 23:05:54 (9440): Preference change detected
2025-07-11 23:05:54 (9440): Setting CPU throttle for VM. (100%)
2025-07-11 23:05:54 (9440): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-11 23:05:56 (9440): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-11 23:05:56 (9440): Guest Log: BIOS: Booting from Hard Disk...
2025-07-11 23:05:59 (9440): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-11 23:05:59 (9440): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-11 23:05:59 (9440): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-11 23:06:03 (9440): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-11 23:06:03 (9440): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-11 23:06:10 (9440): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-11 23:06:10 (9440): Guest Log: 00:00:00.000153 main     Log opened 2025-07-11T23:06:08.337630000Z
2025-07-11 23:06:10 (9440): Guest Log: 00:00:00.000249 main     OS Product: Linux
2025-07-11 23:06:10 (9440): Guest Log: 00:00:00.000273 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-11 23:06:10 (9440): Guest Log: 00:00:00.000293 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-11 23:06:10 (9440): Guest Log: 00:00:00.000313 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-11 23:06:10 (9440): Guest Log: 00:00:00.000314 main     Process ID: 1303
2025-07-11 23:06:10 (9440): Guest Log: 00:00:00.000314 main     Package type: LINUX_64BITS_GENERIC
2025-07-11 23:06:10 (9440): Guest Log: 00:00:00.001277 main     5.2.32 r132073 started. Verbose level = 0
2025-07-11 23:06:10 (9440): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-11 23:06:10 (9440): Guest Log: [INFO] Mounting shared directory
2025-07-11 23:06:10 (9440): Guest Log: [INFO] Checking for init_data.xml
2025-07-11 23:06:20 (9440): Guest Log: 00:00:10.002915 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 468 057 000ns (GuestNow=1 752 267 979 872 154 000 ns GuestLast=1 752 275 168 340 211 000 ns fSetTimeLastLoop=true )
2025-07-11 23:06:22 (9440): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-11 23:06:22 (9440): Guest Log: [INFO] Detected branch: prod
2025-07-11 23:06:22 (9440): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-11 23:06:22 (9440): Guest Log: Copying input files
2025-07-11 23:06:23 (9440): Guest Log: Copied input files into RunAtlas.
2025-07-11 23:06:24 (9440): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-11 23:06:24 (9440): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-11 23:06:24 (9440): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-11 23:06:24 (9440): Guest Log: Further information can be found at the LHC@home message board.
2025-07-11 23:06:33 (9440): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-11 23:06:34 (9440): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-11 23:06:34 (9440): Guest Log: 2.6.3.0 1581 0 32184 148217 4 1 3117618 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-11 23:06:34 (9440): Guest Log: copied the webapp to /var/www
2025-07-11 23:06:34 (9440): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-11 23:06:34 (9440): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-11 23:06:35 (9440): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-11 23:06:35 (9440): Guest Log:  *** Starting ATLAS job. (PandaID=6721085159 taskID=45482062) ***
2025-07-12 00:46:02 (9440): Status Report: Elapsed Time: '6000.000000'
2025-07-12 00:46:02 (9440): Status Report: CPU Time: '21951.875000'
2025-07-12 02:26:10 (9440): Status Report: Elapsed Time: '12000.000000'
2025-07-12 02:26:10 (9440): Status Report: CPU Time: '45636.343750'
2025-07-12 04:06:21 (9440): Status Report: Elapsed Time: '18000.000000'
2025-07-12 04:06:21 (9440): Status Report: CPU Time: '69310.234375'
2025-07-12 04:51:29 (9440): Guest Log:  *** Job finished ***
2025-07-12 04:51:29 (9440): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:12,428 | INFO     | [data] queue_monitor thread has finished
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:18,619 | INFO     | job.realtimelogging is not enabled
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:19,634 | INFO     | [payload] run_realtimelog thread has finished
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:20,637 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140235738175296)>', '<ExcThread(monitor, started 140235136542464)>']
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:21,620 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:21,621 | INFO     | [monitor] control thread has ended
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,639 | INFO     | all workflow threads have been joined
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,639 | INFO     | end of generic workflow (traces error code: 0)
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,639 | INFO     | traces error code: 0
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,735 [wrapper] ==== pilot stdout END ====
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,740 [wrapper] ==== wrapper stdout RESUME ====
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,744 [wrapper] pilotpid: 5902
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,749 [wrapper] Pilot exit status: 0
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,954 [wrapper] pandaids: 6721085159
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,985 [wrapper] cleanup supervisor_pilot 21603 5903
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,990 [wrapper] Test setup, not cleaning
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,994 [wrapper] apfmon messages muted
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:25,998 [wrapper] ==== wrapper stdout END ====
2025-07-12 04:51:29 (9440): Guest Log: 2025-07-12 02:51:26,002 [wrapper] ==== wrapper stderr END ====
2025-07-12 04:51:29 (9440): Guest Log:  *** Error codes and diagnostics ***
2025-07-12 04:51:29 (9440): Guest Log:     "exeErrorCode": 0,
2025-07-12 04:51:29 (9440): Guest Log:     "exeErrorDiag": "",
2025-07-12 04:51:29 (9440): Guest Log:     "pilotErrorCode": 0,
2025-07-12 04:51:29 (9440): Guest Log:     "pilotErrorDiag": "",
2025-07-12 04:51:29 (9440): Guest Log:  *** Listing of results directory ***
2025-07-12 04:51:29 (9440): Guest Log: total 263344
2025-07-12 04:51:29 (9440): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul  7 01:02 pilot3.tar.gz
2025-07-12 04:51:29 (9440): Guest Log: -rwx------. 1 atlas atlas     36292 Jul  7 01:22 runpilot2-wrapper.sh
2025-07-12 04:51:29 (9440): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul  7 01:22 queuedata.json
2025-07-12 04:51:29 (9440): Guest Log: -rwxr-xr-x. 1 atlas atlas      9231 Jul 11 21:06 init_data.xml
2025-07-12 04:51:29 (9440): Guest Log: -rwxr-xr-x. 1 atlas atlas    542883 Jul 11 21:06 input.tar.gz
2025-07-12 04:51:29 (9440): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 11 21:06 start_atlas.sh
2025-07-12 04:51:29 (9440): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 11 21:06 EVNT.45482060._000539.pool.root.1 -> /data/./ATLAS.root_0
2025-07-12 04:51:29 (9440): Guest Log: -rw-r--r--. 1 atlas atlas      2534 Jul 11 21:06 pandaJob.out
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas    976207 Jul 11 21:07 agis_schedconf.cvmfs.json
2025-07-12 04:51:29 (9440): Guest Log: drwx------. 4 atlas atlas      4096 Jul 11 21:07 pilot3
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas 261742902 Jul 12 02:50 HITS.45482062._013463.pool.root.1
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas        95 Jul 12 02:50 pilot_heartbeat.json
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas      1032 Jul 12 02:50 memory_monitor_summary.json
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas   1588641 Jul 12 02:50 agis_ddmendpoints.agis.ALL.json
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas    366751 Jul 12 02:50 log.45482062._013463.job.log.tgz.1
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas      7823 Jul 12 02:51 heartbeat.json
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas      4612 Jul 12 02:51 pilotlog.txt
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas   1689505 Jul 12 02:51 log.45482062._013463.job.log.1
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas       357 Jul 12 02:51 output.list
2025-07-12 04:51:29 (9440): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 12 02:51 runtime_log
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas   2078720 Jul 12 02:51 result.tar.gz
2025-07-12 04:51:29 (9440): Guest Log: -rw-r--r--. 1 atlas atlas      8600 Jul 12 02:51 runtime_log.err
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas       659 Jul 12 02:51 N5PODmNkps7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmClDLDmxgkuxm.diag
2025-07-12 04:51:29 (9440): Guest Log: Looking for outputfile HITS.45482062._013463.pool.root.1
2025-07-12 04:51:29 (9440): Guest Log: HITS file was successfully produced
2025-07-12 04:51:29 (9440): Guest Log: -rw-------. 1 atlas atlas 261742902 Jul 12 02:50 /home/atlas/RunAtlas/HITS.45482062._013463.pool.root.1
2025-07-12 04:51:31 (9440): Guest Log: Successfully finished the ATLAS job!
2025-07-12 04:51:31 (9440): Guest Log: Copying the results back to the shared directory!
2025-07-12 04:51:31 (9440): Guest Log:  *** Contents of shared directory: ***
2025-07-12 04:51:31 (9440): Guest Log: total 570884
2025-07-12 04:51:31 (9440): Guest Log: -rwxrwxrwx. 1 root root 320181489 Jul 11 21:05 ATLAS.root_0
2025-07-12 04:51:31 (9440): Guest Log: -rwxrwxrwx. 1 root root 261742902 Jul 12 02:51 HITS.pool.root.1
2025-07-12 04:51:31 (9440): Guest Log: -rwxrwxrwx. 1 root root      9231 Jul 11 21:05 init_data.xml
2025-07-12 04:51:31 (9440): Guest Log: -rwxrwxrwx. 1 root root    542883 Jul  7 05:48 input.tar.gz
2025-07-12 04:51:31 (9440): Guest Log: -rwxrwxrwx. 1 root root   2078720 Jul 12 02:51 result.tar.gz
2025-07-12 04:51:31 (9440): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul  7 05:48 start_atlas.sh
2025-07-12 04:51:31 (9440): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-12 04:51:31 (9440): VM Completion File Detected.
2025-07-12 04:51:31 (9440): Powering off VM.
2025-07-12 04:51:31 (9440): Successfully stopped VM.
2025-07-12 04:51:31 (9440): Deregistering VM. (boinc_1e3c118dea4a8851, slot#2)
2025-07-12 04:51:31 (9440): Removing network bandwidth throttle group from VM.
2025-07-12 04:51:32 (9440): Removing VM from VirtualBox.
04:51:37 (9440): called boinc_finish(0)

</stderr_txt>
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