Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:03:34 (215783): wrapper (7.7.26015): starting
20:03:34 (215783): wrapper: running run_atlas (--nthreads 4)
[2025-07-11 20:03:34] Arguments: --nthreads 4
[2025-07-11 20:03:34] Threads: 4
[2025-07-11 20:03:34] Checking for CVMFS
[2025-07-11 20:03:34] No cvmfs_config command found, will try listing directly
[2025-07-11 20:03:34] CVMFS is ok
[2025-07-11 20:03:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-11 20:03:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-11 20:03:34] Further information can be found at the LHC@home message board.
[2025-07-11 20:03:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-11 20:03:34] Checking for apptainer binary...
[2025-07-11 20:03:34] which: no apptainer in ((null))
[2025-07-11 20:03:34] apptainer is not installed, using version from CVMFS
[2025-07-11 20:03:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-11 20:03:34] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2025-07-11 20:03:34] apptainer works
[2025-07-11 20:03:34] Set ATHENA_PROC_NUMBER=4
[2025-07-11 20:03:34] Set ATHENA_CORE_NUMBER=4
[2025-07-11 20:03:34] Starting ATLAS job with PandaID=6721083342
[2025-07-11 20:03:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:11:56 (339172): wrapper (7.7.26015): starting
22:11:56 (339172): wrapper: running run_atlas (--nthreads 4)
[2025-07-11 22:11:56] Arguments: --nthreads 4
[2025-07-11 22:11:56] Threads: 4
[2025-07-11 22:11:56] This job has been restarted, cleaning up previous attempt
[2025-07-11 22:11:57] Checking for CVMFS
[2025-07-11 22:11:57] No cvmfs_config command found, will try listing directly
[2025-07-11 22:11:57] CVMFS is ok
[2025-07-11 22:11:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-11 22:11:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-11 22:11:57] Further information can be found at the LHC@home message board.
[2025-07-11 22:11:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-11 22:11:57] Checking for apptainer binary...
[2025-07-11 22:11:57] which: no apptainer in ((null))
[2025-07-11 22:11:57] apptainer is not installed, using version from CVMFS
[2025-07-11 22:11:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-11 22:11:57] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2025-07-11 22:11:57] apptainer works
[2025-07-11 22:11:57] Set ATHENA_PROC_NUMBER=4
[2025-07-11 22:11:57] Set ATHENA_CORE_NUMBER=4
[2025-07-11 22:11:57] Starting ATLAS job with PandaID=6721083342
[2025-07-11 22:11:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-12 01:26:49]  *** The last 200 lines of the pilot log: ***
[2025-07-12 01:26:49] 2025-07-11 23:26:33,055 | INFO     | number of running child processes to parent process 349989: 1
[2025-07-12 01:26:49] 2025-07-11 23:26:33,055 | INFO     | maximum number of monitored processes: 6
[2025-07-12 01:26:49] 2025-07-11 23:26:35,558 | INFO     | monitor loop #874: job 0:6721083342 is in state 'finished'
[2025-07-12 01:26:49] 2025-07-11 23:26:35,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-12 01:26:49] 2025-07-11 23:26:36,629 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-12 01:26:49] 2025-07-11 23:26:36,633 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2785.1306250000007
[2025-07-12 01:26:49] 2025-07-11 23:26:36,638 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6721083342/memory_monitor_summary.json (trf name=prmon)
[2025-07-12 01:26:49] 2025-07-11 23:26:36,638 | INFO     | extracted standard info from prmon json
[2025-07-12 01:26:49] 2025-07-11 23:26:36,638 | INFO     | extracted standard memory fields from prmon json
[2025-07-12 01:26:49] 2025-07-11 23:26:36,638 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-12 01:26:49] 2025-07-11 23:26:36,639 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-12 01:26:49] 2025-07-11 23:26:36,639 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-12 01:26:49] 2025-07-11 23:26:36,641 | INFO     | fitting pss+swap vs Time
[2025-07-12 01:26:49] 2025-07-11 23:26:36,641 | INFO     | sum of square deviations: 2160561440.0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,642 | INFO     | sum of deviations: 23565239765.999992
[2025-07-12 01:26:49] 2025-07-11 23:26:36,642 | INFO     | mean x: 1752270548.0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,642 | INFO     | mean y: 2401573.502617801
[2025-07-12 01:26:49] 2025-07-11 23:26:36,642 | INFO     | -- intersect: -19109610162.90984
[2025-07-12 01:26:49] 2025-07-11 23:26:36,642 | INFO     | intersect: -19109610162.90984
[2025-07-12 01:26:49] 2025-07-11 23:26:36,643 | INFO     | chi2: 1.505781756456478
[2025-07-12 01:26:49] 2025-07-11 23:26:36,643 | INFO     | sum of square deviations: 1995283922.5
[2025-07-12 01:26:49] 2025-07-11 23:26:36,644 | INFO     | sum of deviations: 22840175405.0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,644 | INFO     | mean x: 1752270395.5
[2025-07-12 01:26:49] 2025-07-11 23:26:36,644 | INFO     | mean y: 2400904.204301075
[2025-07-12 01:26:49] 2025-07-11 23:26:36,644 | INFO     | -- intersect: -20055979128.278885
[2025-07-12 01:26:49] 2025-07-11 23:26:36,644 | INFO     | intersect: -20055979128.278885
[2025-07-12 01:26:49] 2025-07-11 23:26:36,644 | INFO     | chi2: 1.5067083238147079
[2025-07-12 01:26:49] 2025-07-11 23:26:36,644 | INFO     | current chi2=1.5067083238147079 (change=-0.06153397424673313 %)
[2025-07-12 01:26:49] 2025-07-11 23:26:36,644 | INFO     | right removable region: 185
[2025-07-12 01:26:49] 2025-07-11 23:26:36,644 | INFO     | sum of square deviations: 1995283922.5
[2025-07-12 01:26:49] 2025-07-11 23:26:36,645 | INFO     | sum of deviations: -6331318862.500001
[2025-07-12 01:26:49] 2025-07-11 23:26:36,645 | INFO     | mean x: 1752270700.5
[2025-07-12 01:26:49] 2025-07-11 23:26:36,645 | INFO     | mean y: 2428899.0161290322
[2025-07-12 01:26:49] 2025-07-11 23:26:36,645 | INFO     | -- intersect: 5562632343.336591
[2025-07-12 01:26:49] 2025-07-11 23:26:36,645 | INFO     | intersect: 5562632343.336591
[2025-07-12 01:26:49] 2025-07-11 23:26:36,646 | INFO     | chi2: 0.08016661035064361
[2025-07-12 01:26:49] 2025-07-11 23:26:36,646 | INFO     | current chi2=0.08016661035064361 (change=94.67608038104422 %)
[2025-07-12 01:26:49] 2025-07-11 23:26:36,646 | INFO     | sum of square deviations: 1838657730.0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,647 | INFO     | sum of deviations: -8770918184.000002
[2025-07-12 01:26:49] 2025-07-11 23:26:36,647 | INFO     | mean x: 1752270853.0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,647 | INFO     | mean y: 2431259.591160221
[2025-07-12 01:26:49] 2025-07-11 23:26:36,647 | INFO     | -- intersect: 8361259570.649844
[2025-07-12 01:26:49] 2025-07-11 23:26:36,647 | INFO     | intersect: 8361259570.649844
[2025-07-12 01:26:49] 2025-07-11 23:26:36,647 | INFO     | chi2: 0.06699345248492694
[2025-07-12 01:26:49] 2025-07-11 23:26:36,647 | INFO     | current chi2=0.06699345248492694 (change=16.43222509732933 %)
[2025-07-12 01:26:49] 2025-07-11 23:26:36,647 | INFO     | left removable region: 20
[2025-07-12 01:26:49] 2025-07-11 23:26:36,648 | INFO     | sum of square deviations: 1392881930.0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,648 | INFO     | sum of deviations: -11531275421.999996
[2025-07-12 01:26:49] 2025-07-11 23:26:36,648 | INFO     | mean x: 1752270975.0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,648 | INFO     | mean y: 2434717.884848485
[2025-07-12 01:26:49] 2025-07-11 23:26:36,648 | INFO     | -- intersect: 14508990364.494081
[2025-07-12 01:26:49] 2025-07-11 23:26:36,648 | INFO     | intersect: 14508990364.494081
[2025-07-12 01:26:49] 2025-07-11 23:26:36,649 | INFO     | chi2: 0.052435779304530944
[2025-07-12 01:26:49] 2025-07-11 23:26:36,649 | INFO     | -- intersect: 14508990364.494081
[2025-07-12 01:26:49] 2025-07-11 23:26:36,649 | INFO     | current memory leak: -8.28 B/s (using 165 data points, chi2=0.05)
[2025-07-12 01:26:49] 2025-07-11 23:26:36,649 | INFO     | could have reported an average CPU frequency of 2672 MHz (10 samples)
[2025-07-12 01:26:49] 2025-07-11 23:26:36,649 | INFO     | ..............................
[2025-07-12 01:26:49] 2025-07-11 23:26:36,649 | INFO     | . Timing measurements:
[2025-07-12 01:26:49] 2025-07-11 23:26:36,649 | INFO     | . get job = 0 s
[2025-07-12 01:26:49] 2025-07-11 23:26:36,649 | INFO     | . initial setup = 1 s
[2025-07-12 01:26:49] 2025-07-11 23:26:36,650 | INFO     | . payload setup = 6 s
[2025-07-12 01:26:49] 2025-07-11 23:26:36,650 | INFO     | . stage-in = 0 s
[2025-07-12 01:26:49] 2025-07-11 23:26:36,650 | INFO     | . payload execution = 11635 s
[2025-07-12 01:26:49] 2025-07-11 23:26:36,650 | INFO     | . stage-out = 0 s
[2025-07-12 01:26:49] 2025-07-11 23:26:36,650 | INFO     | . log creation = 0 s
[2025-07-12 01:26:49] 2025-07-11 23:26:36,650 | INFO     | ..............................
[2025-07-12 01:26:49] 2025-07-11 23:26:36,875 | INFO     | 11670s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-12 01:26:49] 2025-07-11 23:26:36,914 | INFO     | 
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | job summary report
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | --------------------------------------------------
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | PanDA job id: 6721083342
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | task id: 45482062
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | errors: (none)
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | pilot state: finished 
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | transexitcode: 0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | exeerrorcode: 0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | exeerrordiag: 
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | exitcode: 0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | exitmsg: OK
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | cpuconsumptiontime: 44861 s
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | nevents: 400
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | neventsw: 0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | pid: 349989
[2025-07-12 01:26:49] 2025-07-11 23:26:36,915 | INFO     | pgrp: 349989
[2025-07-12 01:26:49] 2025-07-11 23:26:36,916 | INFO     | corecount: 4
[2025-07-12 01:26:49] 2025-07-11 23:26:36,916 | INFO     | event service: False
[2025-07-12 01:26:49] 2025-07-11 23:26:36,916 | INFO     | sizes: {0: 2393333, 1: 2393532, 5: 2393794, 12: 2393850, 11646: 2423405, 11647: 2432425, 11650: 2432609, 11655: 2432803}
[2025-07-12 01:26:49] 2025-07-11 23:26:36,916 | INFO     | --------------------------------------------------
[2025-07-12 01:26:49] 2025-07-11 23:26:36,916 | INFO     | 
[2025-07-12 01:26:49] 2025-07-11 23:26:36,916 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2025-07-12 01:26:49] 2025-07-11 23:26:36,928 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,929 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,930 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,930 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-12 01:26:49] 2025-07-11 23:26:36,930 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,930 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-12 01:26:49] 2025-07-11 23:26:36,930 | INFO     | job 6721083342 has completed (purged errors)
[2025-07-12 01:26:49] 2025-07-11 23:26:36,930 | INFO     | overall cleanup function is called
[2025-07-12 01:26:49] 2025-07-11 23:26:37,937 | INFO     | --- collectZombieJob: --- 10, [349989]
[2025-07-12 01:26:49] 2025-07-11 23:26:37,937 | INFO     | zombie collector waiting for pid 349989
[2025-07-12 01:26:49] 2025-07-11 23:26:37,937 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-12 01:26:49] 2025-07-11 23:26:37,937 | INFO     | collected zombie processes
[2025-07-12 01:26:49] 2025-07-11 23:26:37,937 | INFO     | will attempt to kill all subprocesses of pid=349989
[2025-07-12 01:26:49] 2025-07-11 23:26:38,065 | INFO     | process IDs to be killed: [349989] (in reverse order)
[2025-07-12 01:26:49] 2025-07-11 23:26:38,103 | WARNING  | found no corresponding commands to process id(s)
[2025-07-12 01:26:49] 2025-07-11 23:26:38,103 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-12 01:26:49] 2025-07-11 23:26:38,107 | INFO     | did not find any defunct processes belonging to 349989
[2025-07-12 01:26:49] 2025-07-11 23:26:38,110 | INFO     | did not find any defunct processes belonging to 349989
[2025-07-12 01:26:49] 2025-07-11 23:26:38,110 | INFO     | ready for new job
[2025-07-12 01:26:49] 2025-07-11 23:26:38,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-12 01:26:49] 2025-07-11 23:26:38,112 | INFO     | ***************************************
[2025-07-12 01:26:49] 2025-07-11 23:26:38,112 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-12 01:26:49] 2025-07-11 23:26:38,112 | INFO     | ***************************************
[2025-07-12 01:26:49] 2025-07-11 23:26:38,112 | INFO     | 
[2025-07-12 01:26:49] 2025-07-11 23:26:38,114 | INFO     | architecture information:
[2025-07-12 01:26:49] 2025-07-11 23:26:38,114 | INFO     | executing command: cat /etc/os-release
[2025-07-12 01:26:49] 2025-07-11 23:26:38,122 | INFO     | cat /etc/os-release:
[2025-07-12 01:26:49] NAME="CentOS Linux"
[2025-07-12 01:26:49] VERSION="7 (Core)"
[2025-07-12 01:26:49] ID="centos"
[2025-07-12 01:26:49] ID_LIKE="rhel fedora"
[2025-07-12 01:26:49] VERSION_ID="7"
[2025-07-12 01:26:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-12 01:26:49] ANSI_COLOR="0;31"
[2025-07-12 01:26:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-12 01:26:49] HOME_URL="https://www.centos.org/"
[2025-07-12 01:26:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-12 01:26:49] 
[2025-07-12 01:26:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-12 01:26:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-12 01:26:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-12 01:26:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-12 01:26:49] 
[2025-07-12 01:26:49] 2025-07-11 23:26:38,122 | INFO     | ***************************************
[2025-07-12 01:26:49] 2025-07-11 23:26:38,625 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2025-07-12 01:26:49] 2025-07-11 23:26:38,634 | INFO     | sufficient remaining disk space (1676077432832 B)
[2025-07-12 01:26:49] 2025-07-11 23:26:38,634 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-12 01:26:49] 2025-07-11 23:26:38,634 | INFO     | current server update state: UPDATING_FINAL
[2025-07-12 01:26:49] 2025-07-11 23:26:38,635 | INFO     | update_server=False
[2025-07-12 01:26:49] 2025-07-11 23:26:38,635 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-12 01:26:49] 2025-07-11 23:26:38,635 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-12 01:26:49] 2025-07-11 23:26:38,635 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-12 01:26:49] 2025-07-11 23:26:38,635 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-12 01:26:49] 2025-07-11 23:26:38,636 | INFO     | found 0 job(s) in 20 queues
[2025-07-12 01:26:49] 2025-07-11 23:26:38,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-12 01:26:49] 2025-07-11 23:26:38,636 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-12 01:26:49] 2025-07-11 23:26:38,841 | INFO     | all payload control threads have been joined
[2025-07-12 01:26:49] 2025-07-11 23:26:39,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-12 01:26:49] 2025-07-11 23:26:39,066 | INFO     | aborting loop
[2025-07-12 01:26:49] 2025-07-11 23:26:39,559 | INFO     | all data control threads have been joined
[2025-07-12 01:26:49] 2025-07-11 23:26:39,640 | INFO     | [job] retrieve thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:39,641 | INFO     | [job] queue monitor thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:39,656 | INFO     | [job] validate thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:39,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-12 01:26:49] 2025-07-11 23:26:39,811 | INFO     | [payload] execute_payloads thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:39,847 | INFO     | [data] copytool_in thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:39,847 | INFO     | [payload] control thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:39,980 | INFO     | all job control threads have been joined
[2025-07-12 01:26:49] 2025-07-11 23:26:40,072 | INFO     | [job] job monitor thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:40,190 | INFO     | [job] create_data_payload thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:40,521 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:40,564 | INFO     | [data] control thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:40,573 | INFO     | [payload] validate_post thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:40,812 | INFO     | [payload] validate_pre thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:40,986 | INFO     | [job] control thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:41,228 | INFO     | [payload] failed_post thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:41,723 | INFO     | [data] copytool_out thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:42,641 | INFO     | [data] queue_monitor thread has finished
[2025-07-12 01:26:49] 2025-07-11 23:26:44,363 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23295353055040)>', '<ExcThread(monitor, started 23295109838592)>']
[2025-07-12 01:26:49] 2025-07-11 23:26:44,666 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-12 01:26:49] 2025-07-11 23:26:44,667 | INFO     | [monitor] control thread has ended
[2025-07-12 01:26:49] 2025-07-11 23:26:49,376 | INFO     | all workflow threads have been joined
[2025-07-12 01:26:49] 2025-07-11 23:26:49,377 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-12 01:26:49] 2025-07-11 23:26:49,377 | INFO     | traces error code: 0
[2025-07-12 01:26:49] 2025-07-11 23:26:49,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-12 01:26:49] 2025-07-11 23:26:49,457 [wrapper] ==== pilot stdout END ====
[2025-07-12 01:26:49] 2025-07-11 23:26:49,459 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-12 01:26:49] 2025-07-11 23:26:49,461 [wrapper] pilotpid: 343153
[2025-07-12 01:26:49] 2025-07-11 23:26:49,463 [wrapper] Pilot exit status: 0
[2025-07-12 01:26:49] 2025-07-11 23:26:49,470 [wrapper] pandaids: 6721083342 6721083342
[2025-07-12 01:26:49] 2025-07-11 23:26:49,495 [wrapper] cleanup supervisor_pilot  484975 343154
[2025-07-12 01:26:49] 2025-07-11 23:26:49,497 [wrapper] Test setup, not cleaning
[2025-07-12 01:26:49] 2025-07-11 23:26:49,498 [wrapper] apfmon messages muted
[2025-07-12 01:26:49] 2025-07-11 23:26:49,500 [wrapper] ==== wrapper stdout END ====
[2025-07-12 01:26:49] 2025-07-11 23:26:49,502 [wrapper] ==== wrapper stderr END ====
[2025-07-12 01:26:49]  *** Error codes and diagnostics ***
[2025-07-12 01:26:49]     "exeErrorCode": 0,
[2025-07-12 01:26:49]     "exeErrorDiag": "",
[2025-07-12 01:26:49]     "pilotErrorCode": 0,
[2025-07-12 01:26:49]     "pilotErrorDiag": "",
[2025-07-12 01:26:49]  *** Listing of results directory ***
[2025-07-12 01:26:49] total 874772
[2025-07-12 01:26:49] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc    530466 Jul  7 01:36 pilot3.tar.gz
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc      5112 Jul  7 01:57 queuedata.json
[2025-07-12 01:26:49] -rwx------ 1 boinc boinc     36292 Jul  7 01:57 runpilot2-wrapper.sh
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc       100 Jul 11 19:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-12 01:26:49] -rwxr-xr-x 1 boinc boinc      7986 Jul 11 19:15 run_atlas
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc       105 Jul 11 19:15 job.xml
[2025-07-12 01:26:49] -rw-r--r-- 3 boinc boinc 314962870 Jul 11 20:03 EVNT.45482060._000504.pool.root.1
[2025-07-12 01:26:49] -rw-r--r-- 3 boinc boinc 314962870 Jul 11 20:03 ATLAS.root_0
[2025-07-12 01:26:49] drwxrwx--x 2 boinc boinc      4096 Jul 11 20:03 shared
[2025-07-12 01:26:49] -rw-r--r-- 2 boinc boinc    542880 Jul 11 20:03 input.tar.gz
[2025-07-12 01:26:49] -rw-r--r-- 2 boinc boinc     15095 Jul 11 20:03 start_atlas.sh
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc         0 Jul 11 20:03 boinc_lockfile
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc      2534 Jul 11 22:11 pandaJob.out
[2025-07-12 01:26:49] -rw------- 1 boinc boinc    976215 Jul 11 22:12 agis_schedconf.cvmfs.json
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc      6427 Jul 11 22:13 init_data.xml
[2025-07-12 01:26:49] -rw------- 1 boinc boinc 259112275 Jul 12 01:25 HITS.45482062._012603.pool.root.1
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc       531 Jul 12 01:26 boinc_task_state.xml
[2025-07-12 01:26:49] -rw------- 1 boinc boinc      1035 Jul 12 01:26 memory_monitor_summary.json
[2025-07-12 01:26:49] -rw------- 1 boinc boinc   1588641 Jul 12 01:26 agis_ddmendpoints.agis.ALL.json
[2025-07-12 01:26:49] -rw------- 1 boinc boinc    322244 Jul 12 01:26 log.45482062._012603.job.log.tgz.1
[2025-07-12 01:26:49] -rw------- 1 boinc boinc        97 Jul 12 01:26 pilot_heartbeat.json
[2025-07-12 01:26:49] -rw------- 1 boinc boinc      7835 Jul 12 01:26 heartbeat.json
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc        28 Jul 12 01:26 wrapper_checkpoint.txt
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc      8192 Jul 12 01:26 boinc_mmap_file
[2025-07-12 01:26:49] -rw------- 1 boinc boinc      4491 Jul 12 01:26 pilotlog.txt
[2025-07-12 01:26:49] -rw------- 1 boinc boinc   1098665 Jul 12 01:26 log.45482062._012603.job.log.1
[2025-07-12 01:26:49] -rw------- 1 boinc boinc       357 Jul 12 01:26 output.list
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc       620 Jul 12 01:26 runtime_log
[2025-07-12 01:26:49] -rw------- 1 boinc boinc   1443840 Jul 12 01:26 result.tar.gz
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc      9104 Jul 12 01:26 runtime_log.err
[2025-07-12 01:26:49] -rw------- 1 boinc boinc       789 Jul 12 01:26 TTNLDm9Pos7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5aDLDmL2Tqqm.diag
[2025-07-12 01:26:49] -rw-r--r-- 1 boinc boinc     22808 Jul 12 01:26 stderr.txt
[2025-07-12 01:26:49] HITS file was successfully produced:
[2025-07-12 01:26:49] -rw------- 1 boinc boinc 259112275 Jul 12 01:25 shared/HITS.pool.root.1
[2025-07-12 01:26:49]  *** Contents of shared directory: ***
[2025-07-12 01:26:49] total 562592
[2025-07-12 01:26:49] -rw-r--r-- 3 boinc boinc 314962870 Jul 11 20:03 ATLAS.root_0
[2025-07-12 01:26:49] -rw-r--r-- 2 boinc boinc    542880 Jul 11 20:03 input.tar.gz
[2025-07-12 01:26:49] -rw-r--r-- 2 boinc boinc     15095 Jul 11 20:03 start_atlas.sh
[2025-07-12 01:26:49] -rw------- 1 boinc boinc 259112275 Jul 12 01:25 HITS.pool.root.1
[2025-07-12 01:26:49] -rw------- 1 boinc boinc   1443840 Jul 12 01:26 result.tar.gz
01:26:51 (339172): run_atlas exited; CPU time 45127.406221
01:26:51 (339172): called boinc_finish(0)

</stderr_txt>
]]>

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