Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:28:31 (1336211): wrapper (7.7.26015): starting
21:28:31 (1336211): wrapper: running run_atlas (--nthreads 12)
[2025-07-06 21:28:31] Arguments: --nthreads 12
[2025-07-06 21:28:31] Threads: 12
[2025-07-06 21:28:31] Checking for CVMFS
[2025-07-06 21:28:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-06 21:28:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-06 21:28:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-06 21:28:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-06 21:28:31] 2.11.5.0 139065 7736 231296 148030 3 302 37691752 45568000 16518 130560 0 64845735 99.775 39999291 30526 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-06 21:28:31] CVMFS is ok
[2025-07-06 21:28:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-06 21:28:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-06 21:28:31] Further information can be found at the LHC@home message board.
[2025-07-06 21:28:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-06 21:28:31] Checking for apptainer binary...
[2025-07-06 21:28:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-06 21:28:31] Running /usr/bin/apptainer --version
[2025-07-06 21:28:32] apptainer version 1.4.1-1.el9
[2025-07-06 21:28:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-06 21:28:32] wns0137.triumf.lcg
[2025-07-06 21:28:32] apptainer works
[2025-07-06 21:28:32] Set ATHENA_PROC_NUMBER=12
[2025-07-06 21:28:32] Set ATHENA_CORE_NUMBER=12
[2025-07-06 21:28:32] Starting ATLAS job with PandaID=6721168269
[2025-07-06 21:28:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-06 21:32:45]  *** The last 200 lines of the pilot log: ***
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | WARNING  | wrong length of table data, x=[1751862575.0], y=[1322.0] (must be same and length>=4)
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | could have reported an average CPU frequency of 2545 MHz (4 samples)
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | ..............................
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . Timing measurements:
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . get job = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . initial setup = 2 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . payload setup = 11 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . stage-in = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . payload execution = 37 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . stage-out = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . log creation = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,702 | INFO     | ..............................
[2025-07-06 21:32:45] 2025-07-07 04:32:13,702 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-06 21:32:45] 2025-07-07 04:32:13,702 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6721168269/pilotlog.txt
[2025-07-06 21:32:45] 2025-07-07 04:32:13,714 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-06 21:32:45] - Log from pilotlog.txt -
[2025-07-06 21:32:45] 2025-07-07 04:32:13,699 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6721168269/memory_monitor_summary.json (trf name=prmon)
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | INFO     | extracted standard info from prmon json
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | INFO     | extracted standard memory fields from prmon json
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | WARNING  | wrong length of table data, x=[1751862575.0], y=[1322.0] (must be same and length>=4)
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | could have reported an average CPU frequency of 2545 MHz (4 samples)
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | ..............................
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . Timing measurements:
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . get job = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . initial setup = 2 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . payload setup = 11 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . stage-in = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . payload execution = 37 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . stage-out = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . log creation = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,702 | INFO     | ..............................
[2025-07-06 21:32:45] 2025-07-07 04:32:13,702 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-06 21:32:45] 2025-07-07 04:32:13,702 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6721168269/pilotlog.txt
[2025-07-06 21:32:45] 2025-07-07 04:32:13,715 | WARNING  | 
[2025-07-06 21:32:45] [begin log extracts]
[2025-07-06 21:32:45] - Log from pilotlog.txt -
[2025-07-06 21:32:45] 2025-07-07 04:32:13,699 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6721168269/memory_monitor_summary.json (trf name=prmon)
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | INFO     | extracted standard info from prmon json
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | INFO     | extracted standard memory fields from prmon json
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-06 21:32:45] 2025-07-07 04:32:13,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | WARNING  | wrong length of table data, x=[1751862575.0], y=[1322.0] (must be same and length>=4)
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | could have reported an average CPU frequency of 2545 MHz (4 samples)
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | ..............................
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . Timing measurements:
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . get job = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . initial setup = 2 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . payload setup = 11 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . stage-in = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . payload execution = 37 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . stage-out = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,701 | INFO     | . log creation = 0 s
[2025-07-06 21:32:45] 2025-07-07 04:32:13,702 | INFO     | ..............................
[2025-07-06 21:32:45] 2025-07-07 04:32:13,702 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-06 21:32:45] 2025-07-07 04:32:13,702 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6721168269/pilotlog.txt
[2025-07-06 21:32:45] [end log extracts]
[2025-07-06 21:32:45] 2025-07-07 04:32:13,715 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-06 21:32:45] 2025-07-07 04:32:13,716 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-06 21:32:45] 2025-07-07 04:32:14,064 | INFO     | 
[2025-07-06 21:32:45] 2025-07-07 04:32:14,064 | INFO     | job summary report
[2025-07-06 21:32:45] 2025-07-07 04:32:14,064 | INFO     | --------------------------------------------------
[2025-07-06 21:32:45] 2025-07-07 04:32:14,064 | INFO     | PanDA job id: 6721168269
[2025-07-06 21:32:45] 2025-07-07 04:32:14,064 | INFO     | task id: 45482137
[2025-07-06 21:32:45] 2025-07-07 04:32:14,064 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-06 21:29:58,170 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-06 21:32:45] 2025-07-07 04:32:14,064 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-06 21:32:45] 2025-07-07 04:32:14,064 | INFO     | pilot state: failed 
[2025-07-06 21:32:45] 2025-07-07 04:32:14,064 | INFO     | transexitcode: 65
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | exeerrorcode: 65
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | exitcode: 65
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | cpuconsumptiontime: 16 s
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | nevents: 0
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | neventsw: 0
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | pid: 1347253
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | pgrp: 1347253
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | corecount: 12
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | event service: False
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | sizes: {0: 2366511, 8: 2366773, 11: 2366801, 53: 2390141, 55: 2394433, 56: 2394461, 181: 2394755}
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | --------------------------------------------------
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | 
[2025-07-06 21:32:45] 2025-07-07 04:32:14,065 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-06 21:32:45] 2025-07-07 04:32:14,101 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,102 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-06 21:32:45] 2025-07-07 04:32:14,103 | INFO     | job 6721168269 has completed (purged errors)
[2025-07-06 21:32:45] 2025-07-07 04:32:14,103 | INFO     | overall cleanup function is called
[2025-07-06 21:32:45] 2025-07-07 04:32:15,109 | INFO     | --- collectZombieJob: --- 10, [1347253]
[2025-07-06 21:32:45] 2025-07-07 04:32:15,109 | INFO     | zombie collector waiting for pid 1347253
[2025-07-06 21:32:45] 2025-07-07 04:32:15,109 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-06 21:32:45] 2025-07-07 04:32:15,109 | INFO     | collected zombie processes
[2025-07-06 21:32:45] 2025-07-07 04:32:15,109 | INFO     | will attempt to kill all subprocesses of pid=1347253
[2025-07-06 21:32:45] 2025-07-07 04:32:15,380 | INFO     | process IDs to be killed: [1347253] (in reverse order)
[2025-07-06 21:32:45] 2025-07-07 04:32:15,461 | WARNING  | found no corresponding commands to process id(s)
[2025-07-06 21:32:45] 2025-07-07 04:32:15,461 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-06 21:32:45] 2025-07-07 04:32:15,472 | INFO     | did not find any defunct processes belonging to 1347253
[2025-07-06 21:32:45] 2025-07-07 04:32:15,478 | INFO     | did not find any defunct processes belonging to 1347253
[2025-07-06 21:32:45] 2025-07-07 04:32:15,479 | INFO     | ready for new job
[2025-07-06 21:32:45] 2025-07-07 04:32:15,479 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-06 21:32:45] 2025-07-07 04:32:15,480 | INFO     | ***************************************
[2025-07-06 21:32:45] 2025-07-07 04:32:15,480 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-06 21:32:45] 2025-07-07 04:32:15,480 | INFO     | ***************************************
[2025-07-06 21:32:45] 2025-07-07 04:32:15,480 | INFO     | 
[2025-07-06 21:32:45] 2025-07-07 04:32:15,482 | INFO     | architecture information:
[2025-07-06 21:32:45] 2025-07-07 04:32:15,482 | INFO     | executing command: cat /etc/os-release
[2025-07-06 21:32:45] 2025-07-07 04:32:15,501 | INFO     | cat /etc/os-release:
[2025-07-06 21:32:45] NAME="CentOS Linux"
[2025-07-06 21:32:45] VERSION="7 (Core)"
[2025-07-06 21:32:45] ID="centos"
[2025-07-06 21:32:45] ID_LIKE="rhel fedora"
[2025-07-06 21:32:45] VERSION_ID="7"
[2025-07-06 21:32:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-06 21:32:45] ANSI_COLOR="0;31"
[2025-07-06 21:32:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-06 21:32:45] HOME_URL="https://www.centos.org/"
[2025-07-06 21:32:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-06 21:32:45] 
[2025-07-06 21:32:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-06 21:32:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-06 21:32:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-06 21:32:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-06 21:32:45] 
[2025-07-06 21:32:45] 2025-07-07 04:32:15,501 | INFO     | ***************************************
[2025-07-06 21:32:45] 2025-07-07 04:32:16,005 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-06 21:32:45] 2025-07-07 04:32:16,027 | INFO     | sufficient remaining disk space (1738606116864 B)
[2025-07-06 21:32:45] 2025-07-07 04:32:16,027 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-06 21:32:45] 2025-07-07 04:32:16,028 | INFO     | current server update state: UPDATING_FINAL
[2025-07-06 21:32:45] 2025-07-07 04:32:16,028 | INFO     | update_server=False
[2025-07-06 21:32:45] 2025-07-07 04:32:16,028 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-06 21:32:45] 2025-07-07 04:32:16,029 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-06 21:32:45] 2025-07-07 04:32:16,029 | INFO     | aborting loop
[2025-07-06 21:32:45] 2025-07-07 04:32:16,036 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-06 21:32:45] 2025-07-07 04:32:16,207 | INFO     | all payload control threads have been joined
[2025-07-06 21:32:45] 2025-07-07 04:32:16,855 | INFO     | all data control threads have been joined
[2025-07-06 21:32:45] 2025-07-07 04:32:17,034 | INFO     | [job] retrieve thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:17,039 | INFO     | [job] job monitor thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:17,055 | INFO     | all job control threads have been joined
[2025-07-06 21:32:45] 2025-07-07 04:32:17,214 | INFO     | [payload] control thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:17,228 | INFO     | [payload] validate_post thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:17,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-06 21:32:45] 2025-07-07 04:32:17,726 | INFO     | [payload] execute_payloads thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:17,861 | INFO     | [data] control thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:17,920 | INFO     | [data] copytool_in thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:18,045 | INFO     | [data] copytool_out thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:18,056 | INFO     | [job] validate thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:18,061 | INFO     | [job] control thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:18,375 | INFO     | [job] create_data_payload thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:18,412 | INFO     | [payload] validate_pre thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:18,495 | INFO     | [payload] failed_post thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:18,503 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:18,939 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-06 21:32:45] 2025-07-07 04:32:19,945 | INFO     | [job] queue monitor thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:21,320 | INFO     | [data] queue_monitor thread has finished
[2025-07-06 21:32:45] 2025-07-07 04:32:21,729 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140250365302592)>', '<ExcThread(monitor, started 140249455908608)>']
[2025-07-06 21:32:45] 2025-07-07 04:32:26,756 | INFO     | all workflow threads have been joined
[2025-07-06 21:32:45] 2025-07-07 04:32:26,756 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-06 21:32:45] 2025-07-07 04:32:26,756 | INFO     | traces error code: 0
[2025-07-06 21:32:45] 2025-07-07 04:32:26,757 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-06 21:32:45] 2025-07-07 04:32:45,534 | INFO     | PID=1340138 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-06 21:32:45] 2025-07-07 04:32:45,534 | INFO     | .. there are 21 such processes running
[2025-07-06 21:32:45] 2025-07-07 04:32:45,534 | INFO     | found 0 job(s) in 20 queues
[2025-07-06 21:32:45] 2025-07-07 04:32:45,534 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-06 21:32:45] 2025-07-07 04:32:45,534 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-06 21:32:45] 2025-07-07 04:32:45,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-06 21:32:45] 2025-07-07 04:32:45,535 | CRITICAL | thread 'MainThread' is not alive
[2025-07-06 21:32:45] 2025-07-07 04:32:45,535 | INFO     | [monitor] control thread has ended
[2025-07-06 21:32:45] 2025-07-07 04:32:45,673 [wrapper] ==== pilot stdout END ====
[2025-07-06 21:32:45] 2025-07-07 04:32:45,675 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-06 21:32:45] 2025-07-07 04:32:45,676 [wrapper] pilotpid: 1340138
[2025-07-06 21:32:45] 2025-07-07 04:32:45,678 [wrapper] Pilot exit status: 0
[2025-07-06 21:32:45] 2025-07-07 04:32:45,686 [wrapper] pandaids: 6721168269
[2025-07-06 21:32:45] 2025-07-07 04:32:45,727 [wrapper] cleanup supervisor_pilot 1340144 1340139
[2025-07-06 21:32:45] 2025-07-07 04:32:45,729 [wrapper] Test setup, not cleaning
[2025-07-06 21:32:45] 2025-07-07 04:32:45,731 [wrapper] apfmon messages muted
[2025-07-06 21:32:45] 2025-07-07 04:32:45,733 [wrapper] ==== wrapper stdout END ====
[2025-07-06 21:32:45] 2025-07-07 04:32:45,734 [wrapper] ==== wrapper stderr END ====
[2025-07-06 21:32:45]  *** Error codes and diagnostics ***
[2025-07-06 21:32:45]     "exeErrorCode": 65,
[2025-07-06 21:32:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-06 21:32:45]     "pilotErrorCode": 1305,
[2025-07-06 21:32:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-06 21:32:45]  *** Listing of results directory ***
[2025-07-06 21:32:45] total 311820
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc    530466 Jul  6 19:03 pilot3.tar.gz
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc      5112 Jul  6 19:21 queuedata.json
[2025-07-06 21:32:45] -rwx------. 1 boinc boinc     36292 Jul  6 19:21 runpilot2-wrapper.sh
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc       100 Jul  6 21:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-06 21:32:45] -rwxr-xr-x. 1 boinc boinc      7986 Jul  6 21:28 run_atlas
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc       105 Jul  6 21:28 job.xml
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc      6598 Jul  6 21:28 init_data.xml
[2025-07-06 21:32:45] -rw-r--r--. 2 boinc boinc 315249322 Jul  6 21:28 EVNT.45482135._000324.pool.root.1
[2025-07-06 21:32:45] -rw-r--r--. 2 boinc boinc     15095 Jul  6 21:28 start_atlas.sh
[2025-07-06 21:32:45] drwxrwx--x. 2 boinc boinc      4096 Jul  6 21:28 shared
[2025-07-06 21:32:45] -rw-r--r--. 2 boinc boinc    542883 Jul  6 21:28 input.tar.gz
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc         0 Jul  6 21:28 boinc_lockfile
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc      2543 Jul  6 21:28 pandaJob.out
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc    970025 Jul  6 21:28 agis_schedconf.cvmfs.json
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc   1574083 Jul  6 21:28 agis_ddmendpoints.agis.ALL.json
[2025-07-06 21:32:45] drwx------. 4 boinc boinc      4096 Jul  6 21:28 pilot3
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc       981 Jul  6 21:30 memory_monitor_summary.json
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc     21183 Jul  6 21:30 log.45482137._008086.job.log.tgz.1
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc       524 Jul  6 21:30 boinc_task_state.xml
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc        95 Jul  6 21:31 pilot_heartbeat.json
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc      8422 Jul  6 21:32 heartbeat.json
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc      8192 Jul  6 21:32 boinc_mmap_file
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc        22 Jul  6 21:32 wrapper_checkpoint.txt
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc       893 Jul  6 21:32 pilotlog.txt
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc     78418 Jul  6 21:32 log.45482137._008086.job.log.1
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc       188 Jul  6 21:32 output.list
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc       620 Jul  6 21:32 runtime_log
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc    122880 Jul  6 21:32 result.tar.gz
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc      8485 Jul  6 21:32 runtime_log.err
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc       644 Jul  6 21:32 p4aMDmOfqs7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjtDLDmGqA9fn.diag
[2025-07-06 21:32:45] -rw-r--r--. 1 boinc boinc     21774 Jul  6 21:32 stderr.txt
[2025-07-06 21:32:45] No HITS result produced
[2025-07-06 21:32:45]  *** Contents of shared directory: ***
[2025-07-06 21:32:45] total 308536
[2025-07-06 21:32:45] -rw-r--r--. 2 boinc boinc 315249322 Jul  6 21:28 ATLAS.root_0
[2025-07-06 21:32:45] -rw-r--r--. 2 boinc boinc     15095 Jul  6 21:28 start_atlas.sh
[2025-07-06 21:32:45] -rw-r--r--. 2 boinc boinc    542883 Jul  6 21:28 input.tar.gz
[2025-07-06 21:32:45] -rw-------. 1 boinc boinc    122880 Jul  6 21:32 result.tar.gz
21:32:47 (1336211): run_atlas exited; CPU time 22.742072
21:32:47 (1336211): called boinc_finish(0)

</stderr_txt>
]]>

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