Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
18:16:48 (947515): wrapper (7.7.26015): starting
18:16:48 (947515): wrapper: running run_atlas (--nthreads 4)
[2025-07-09 18:16:48] Arguments: --nthreads 4
[2025-07-09 18:16:48] Threads: 4
[2025-07-09 18:16:48] Checking for CVMFS
[2025-07-09 18:16:48] No cvmfs_config command found, will try listing directly
[2025-07-09 18:16:48] CVMFS is ok
[2025-07-09 18:16:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-09 18:16:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-09 18:16:48] Further information can be found at the LHC@home message board.
[2025-07-09 18:16:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-09 18:16:48] Checking for apptainer binary...
[2025-07-09 18:16:48] which: no apptainer in ((null))
[2025-07-09 18:16:48] apptainer is not installed, using version from CVMFS
[2025-07-09 18:16:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-09 18:16:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-07-09 18:16:49] apptainer works
[2025-07-09 18:16:49] Set ATHENA_PROC_NUMBER=4
[2025-07-09 18:16:49] Set ATHENA_CORE_NUMBER=4
[2025-07-09 18:16:49] Starting ATLAS job with PandaID=6721000726
[2025-07-09 18:16:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot76/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:44:18 (4021754): wrapper (7.7.26015): starting
23:44:18 (4021754): wrapper: running run_atlas (--nthreads 4)
[2025-07-10 23:44:18] Arguments: --nthreads 4
[2025-07-10 23:44:18] Threads: 4
[2025-07-10 23:44:18] This job has been restarted, cleaning up previous attempt
[2025-07-10 23:44:18] Checking for CVMFS
[2025-07-10 23:44:18] No cvmfs_config command found, will try listing directly
[2025-07-10 23:44:18] CVMFS is ok
[2025-07-10 23:44:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-10 23:44:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-10 23:44:18] Further information can be found at the LHC@home message board.
[2025-07-10 23:44:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-10 23:44:18] Checking for apptainer binary...
[2025-07-10 23:44:18] which: no apptainer in ((null))
[2025-07-10 23:44:18] apptainer is not installed, using version from CVMFS
[2025-07-10 23:44:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-10 23:44:18] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-07-10 23:44:18] apptainer works
[2025-07-10 23:44:18] Set ATHENA_PROC_NUMBER=4
[2025-07-10 23:44:18] Set ATHENA_CORE_NUMBER=4
[2025-07-10 23:44:18] Starting ATLAS job with PandaID=6721000726
[2025-07-10 23:44:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot76/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-10 23:49:10] Job failed
[2025-07-10 23:49:10] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-07-10 23:49:10] ++ pwd
[2025-07-10 23:49:10] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/0/
[2025-07-10 23:49:10] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/0/
[2025-07-10 23:49:10] + mv ATLAS.root_0 EVNT.45482146._000488.pool.root.1
[2025-07-10 23:49:10] mv: 'ATLAS.root_0' and 'EVNT.45482146._000488.pool.root.1' are the same file
[2025-07-10 23:49:10] + tar --strip-components=5 -xvf input.tar.gz
[2025-07-10 23:49:10] + umask 077
[2025-07-10 23:49:10] ++ date +%s
[2025-07-10 23:49:10] + ACCOUNTING_STARTTIME=1752183859
[2025-07-10 23:49:10] + echo 'Detecting resource accounting method available for the job.'
[2025-07-10 23:49:10] Detecting resource accounting method available for the job.
[2025-07-10 23:49:10] + JOB_ACCOUNTING=
[2025-07-10 23:49:10] + command -v arc-job-cgroup
[2025-07-10 23:49:10] + '[' -z '' ']'
[2025-07-10 23:49:10] + GNU_TIME=/usr/bin/time
[2025-07-10 23:49:10] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-07-10 23:49:10] Looking for /usr/bin/time tool for accounting measurements
[2025-07-10 23:49:10] + '[' '!' -z /usr/bin/time ']'
[2025-07-10 23:49:10] + /usr/bin/time --version
[2025-07-10 23:49:10] + echo 'GNU time found and will be used for job accounting.'
[2025-07-10 23:49:10] GNU time found and will be used for job accounting.
[2025-07-10 23:49:10] + JOB_ACCOUNTING=gnutime
[2025-07-10 23:49:10] + '[' -z gnutime ']'
[2025-07-10 23:49:10] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-10 23:49:10] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-10 23:49:10] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-07-06/BOINC_MCORE/6721000726.out
[2025-07-10 23:49:10] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-07-06/BOINC_MCORE/6721000726.out
[2025-07-10 23:49:10] + export PILOT_NOKILL=YES
[2025-07-10 23:49:10] + PILOT_NOKILL=YES
[2025-07-10 23:49:10] + export GRID_GLOBAL_JOBID=vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm
[2025-07-10 23:49:10] + GRID_GLOBAL_JOBID=vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm
[2025-07-10 23:49:10] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm
[2025-07-10 23:49:10] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm
[2025-07-10 23:49:10] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-10 23:49:10] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-10 23:49:10] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-07-10 23:49:10] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-07-10 23:49:10] ++ pwd
[2025-07-10 23:49:10] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot76/slots/0
[2025-07-10 23:49:10] + RUNTIME_JOB_STDIN=/dev/null
[2025-07-10 23:49:10] ++ pwd
[2025-07-10 23:49:10] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot76/slots/0/log.45482148._012223.job.log.1
[2025-07-10 23:49:10] ++ pwd
[2025-07-10 23:49:10] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot76/slots/0/log.45482148._012223.job.log.1
[2025-07-10 23:49:10] ++ pwd
[2025-07-10 23:49:10] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/0.diag
[2025-07-10 23:49:10] + '[' '!' -z '' ']'
[2025-07-10 23:49:10] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-07-10 23:49:10] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-07-10 23:49:10] + RUNTIME_FRONTEND_SEES_NODE=
[2025-07-10 23:49:10] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-07-10 23:49:10] + '[' '!' -z '' ']'
[2025-07-10 23:49:10] + '[' -z yes ']'
[2025-07-10 23:49:10] ++ pwd
[2025-07-10 23:49:10] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/0/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm.diag
[2025-07-10 23:49:10] + runtimeenvironments=
[2025-07-10 23:49:10] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-10 23:49:10] + RTE_function_0 1
[2025-07-10 23:49:10] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-10 23:49:10] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-10 23:49:10] + export BOINC_APP=ATLAS
[2025-07-10 23:49:10] + BOINC_APP=ATLAS
[2025-07-10 23:49:10] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-10 23:49:10] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-10 23:49:10] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-10 23:49:10] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-10 23:49:10] + '[' -z 1 ']'
[2025-07-10 23:49:10] + '[' 1 == 1 ']'
[2025-07-10 23:49:10] + shift
[2025-07-10 23:49:10] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/0/
[2025-07-10 23:49:10] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/0/
[2025-07-10 23:49:10] + '[' 0 -ne 0 ']'
[2025-07-10 23:49:10] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-07-10 23:49:10] + '[' -f /etc/os-release ']'
[2025-07-10 23:49:10] +++ cat /etc/os-release
[2025-07-10 23:49:10] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-07-10 23:49:10] +++ NAME='CentOS Linux'
[2025-07-10 23:49:10] +++ VERSION='7 (Core)'
[2025-07-10 23:49:10] +++ ID=centos
[2025-07-10 23:49:10] +++ ID_LIKE='rhel fedora'
[2025-07-10 23:49:10] +++ VERSION_ID=7
[2025-07-10 23:49:10] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-07-10 23:49:10] +++ ANSI_COLOR='0;31'
[2025-07-10 23:49:10] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-07-10 23:49:10] +++ HOME_URL=https://www.centos.org/
[2025-07-10 23:49:10] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-07-10 23:49:10] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-07-10 23:49:10] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-07-10 23:49:10] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-07-10 23:49:10] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-07-10 23:49:10] ++ echo 'CentOS Linux 7 (Core)'
[2025-07-10 23:49:10] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-07-10 23:49:10] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-07-10 23:49:10] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-07-10 23:49:10] + HOME=/scratch/boinc/var/slot76/slots/0
[2025-07-10 23:49:10] + export HOME
[2025-07-10 23:49:10] + cd /scratch/boinc/var/slot76/slots/0
[2025-07-10 23:49:10] + '[' '!' -z '' ']'
[2025-07-10 23:49:10] + '[' -z '' ']'
[2025-07-10 23:49:10] ++ /bin/hostname -f
[2025-07-10 23:49:10] + nodename=skurut10.grid.cesnet.cz
[2025-07-10 23:49:10] + echo nodename=skurut10.grid.cesnet.cz
[2025-07-10 23:49:10] + echo Processors=2
[2025-07-10 23:49:10] + echo Nodecount=1
[2025-07-10 23:49:10] + echo Benchmark=HEPSPEC:1.0
[2025-07-10 23:49:10] + executable=./runpilot2-wrapper.sh
[2025-07-10 23:49:10] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-07-10 23:49:10] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-07-10 23:49:10] ++ head -n 1
[2025-07-10 23:49:10] ++ tr -d '\0'
[2025-07-10 23:49:10] + line1='#!/bin/bash'
[2025-07-10 23:49:10] ++ echo '#!/bin/bash'
[2025-07-10 23:49:10] ++ sed -n 's/^#! *//p'
[2025-07-10 23:49:10] + shebang=/bin/bash
[2025-07-10 23:49:10] ++ echo /bin/bash
[2025-07-10 23:49:10] ++ awk '{print $1}'
[2025-07-10 23:49:10] + interpreter=/bin/bash
[2025-07-10 23:49:10] + '[' /bin/bash = /usr/bin/env ']'
[2025-07-10 23:49:10] + '[' x/bin/bash = x ']'
[2025-07-10 23:49:10] + type /bin/bash
[2025-07-10 23:49:10] + '[' xgnutime = xgnutime ']'
[2025-07-10 23:49:10] + /usr/bin/time -o /scratch/boinc/var/slot76/slots/0/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.4.12 -z -t --piloturl local --mute --container
[2025-07-10 23:49:10] + RESULT=2
[2025-07-10 23:49:10] + sed -i -e /nodename=/d /scratch/boinc/var/slot76/slots/0/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm.diag
[2025-07-10 23:49:10] ++ grep domain_name init_data.xml
[2025-07-10 23:49:10] ++ awk -F '>' '{print $2}'
[2025-07-10 23:49:10] ++ awk -F '<' '{print $1}'
[2025-07-10 23:49:10] ++ sed -e 's# #_#g'
[2025-07-10 23:49:10] + hostname=skurut10.grid.cesnet.cz
[2025-07-10 23:49:10] ++ grep user_name init_data.xml
[2025-07-10 23:49:10] ++ awk -F '>' '{print $2}'
[2025-07-10 23:49:10] ++ awk -F '<' '{print $1}'
[2025-07-10 23:49:10] ++ sed -e 's# #_#g'
[2025-07-10 23:49:10] + username=praguelcg2
[2025-07-10 23:49:10] + nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-07-10 23:49:10] + echo nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-07-10 23:49:10] + '[' -n 4 ']'
[2025-07-10 23:49:10] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot76/slots/0/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm.diag
[2025-07-10 23:49:10] + echo exitcode=2
[2025-07-10 23:49:10] + runtimeenvironments=
[2025-07-10 23:49:10] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-10 23:49:10] + RTE_function_0 2
[2025-07-10 23:49:10] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-10 23:49:10] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-10 23:49:10] + export BOINC_APP=ATLAS
[2025-07-10 23:49:10] + BOINC_APP=ATLAS
[2025-07-10 23:49:10] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-10 23:49:10] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-10 23:49:10] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-10 23:49:10] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-10 23:49:10] + '[' -z 2 ']'
[2025-07-10 23:49:10] + '[' 2 == 1 ']'
[2025-07-10 23:49:10] + '[' 0 -ne 0 ']'
[2025-07-10 23:49:10] + echo 'zip all output files'
[2025-07-10 23:49:10] + flist='*.diag '
[2025-07-10 23:49:10] + for f in ./heartbeat.json ./output.list ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1 ./gmlog/
[2025-07-10 23:49:10] + '[' -e ./heartbeat.json ']'
[2025-07-10 23:49:10] + flist='*.diag  ./heartbeat.json'
[2025-07-10 23:49:10] + for f in ./heartbeat.json ./output.list ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1 ./gmlog/
[2025-07-10 23:49:10] + '[' -e ./output.list ']'
[2025-07-10 23:49:10] + for f in ./heartbeat.json ./output.list ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1 ./gmlog/
[2025-07-10 23:49:10] + '[' -e ./log.45482148._012223.job.log.1 ']'
[2025-07-10 23:49:10] + flist='*.diag  ./heartbeat.json ./log.45482148._012223.job.log.1'
[2025-07-10 23:49:10] + for f in ./heartbeat.json ./output.list ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1 ./gmlog/
[2025-07-10 23:49:10] + '[' -e ./log.45482148._012223.job.log.1 ']'
[2025-07-10 23:49:10] + flist='*.diag  ./heartbeat.json ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1'
[2025-07-10 23:49:10] + for f in ./heartbeat.json ./output.list ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1 ./gmlog/
[2025-07-10 23:49:10] + '[' -e ./gmlog/ ']'
[2025-07-10 23:49:10] + '[' -f output.list ']'
[2025-07-10 23:49:10] + tar cvf result.tar.gz vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm.diag ./heartbeat.json ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1
[2025-07-10 23:49:10] + '[' xgnutime = xcgroup ']'
[2025-07-10 23:49:10] + '[' -n '' ']'
[2025-07-10 23:49:10] + '[' -n '' ']'
[2025-07-10 23:49:10] ++ date +%s
[2025-07-10 23:49:10] + ACCOUNTING_ENDTIME=1752184048
[2025-07-10 23:49:10] ++ date -d '1970-01-01 UTC 1752183859 seconds' +%Y%m%d%H%M%SZ
[2025-07-10 23:49:10] + echo LRMSStartTime=20250710234419Z
[2025-07-10 23:49:10] ++ date -d '1970-01-01 UTC 1752184048 seconds' +%Y%m%d%H%M%SZ
[2025-07-10 23:49:10] + echo LRMSEndTime=20250710234728Z
[2025-07-10 23:49:10] + echo walltime=189
[2025-07-10 23:49:10] + echo exitcode=2
[2025-07-10 23:49:10] + exit 2
[2025-07-10 23:49:10] ./pilotlog.txt
[2025-07-10 23:49:10] ./log.45482148._012223.job.log.1
[2025-07-10 23:49:10] ./runtime_log
[2025-07-10 23:49:10] ./PanDA_Pilot-6721000726/pilotlog.txt
[2025-07-10 23:49:10] ./PanDA_Pilot-6721000726/log.EVNTtoHITS
[2025-07-10 23:49:10] ./PanDA_Pilot-6721000726/PoolFileCatalog.xml
[2025-07-10 23:49:10] ./PanDA_Pilot-6721000726/prmon.log
[2025-07-10 23:49:10] ./runtime_log.err
[2025-07-10 23:49:10] ./pilot3/pilot/util/realtimelogger.py
[2025-07-10 23:49:10] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-07-10 23:49:10] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-07-10 23:49:10] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-07-10 23:49:10] ./pilot3/pilot/util/loggingsupport.py
[2025-07-10 23:49:10] ./pilot3/pilot/util/lokirealtimelogger.py
20:16:37 (959792): wrapper (7.7.26015): starting
20:16:37 (959792): wrapper: running run_atlas (--nthreads 4)
[2025-07-11 20:16:37] Arguments: --nthreads 4
[2025-07-11 20:16:37] Threads: 4
[2025-07-11 20:16:37] This job has been restarted, cleaning up previous attempt
[2025-07-11 20:16:37] Checking for CVMFS
[2025-07-11 20:16:37] No cvmfs_config command found, will try listing directly
[2025-07-11 20:16:37] CVMFS is ok
[2025-07-11 20:16:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-11 20:16:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-11 20:16:37] Further information can be found at the LHC@home message board.
[2025-07-11 20:16:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-11 20:16:37] Checking for apptainer binary...
[2025-07-11 20:16:37] which: no apptainer in ((null))
[2025-07-11 20:16:37] apptainer is not installed, using version from CVMFS
[2025-07-11 20:16:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-11 20:16:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-07-11 20:16:38] apptainer works
[2025-07-11 20:16:38] Set ATHENA_PROC_NUMBER=4
[2025-07-11 20:16:38] Set ATHENA_CORE_NUMBER=4
[2025-07-11 20:16:38] Starting ATLAS job with PandaID=6721000726
[2025-07-11 20:16:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot76/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-11 20:21:00] Job failed
[2025-07-11 20:21:00] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-07-11 20:21:00] ++ pwd
[2025-07-11 20:21:00] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/0/
[2025-07-11 20:21:00] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot76/slots/0/
[2025-07-11 20:21:00] + mv ATLAS.root_0 EVNT.45482146._000488.pool.root.1
[2025-07-11 20:21:00] mv: 'ATLAS.root_0' and 'EVNT.45482146._000488.pool.root.1' are the same file
[2025-07-11 20:21:00] + tar --strip-components=5 -xvf input.tar.gz
[2025-07-11 20:21:00] + umask 077
[2025-07-11 20:21:00] ++ date +%s
[2025-07-11 20:21:00] + ACCOUNTING_STARTTIME=1752257798
[2025-07-11 20:21:00] + echo 'Detecting resource accounting method available for the job.'
[2025-07-11 20:21:00] Detecting resource accounting method available for the job.
[2025-07-11 20:21:00] + JOB_ACCOUNTING=
[2025-07-11 20:21:00] + command -v arc-job-cgroup
[2025-07-11 20:21:00] + '[' -z '' ']'
[2025-07-11 20:21:00] + GNU_TIME=/usr/bin/time
[2025-07-11 20:21:00] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-07-11 20:21:00] Looking for /usr/bin/time tool for accounting measurements
[2025-07-11 20:21:00] + '[' '!' -z /usr/bin/time ']'
[2025-07-11 20:21:00] + /usr/bin/time --version
[2025-07-11 20:21:00] + echo 'GNU time found and will be used for job accounting.'
[2025-07-11 20:21:00] GNU time found and will be used for job accounting.
[2025-07-11 20:21:00] + JOB_ACCOUNTING=gnutime
[2025-07-11 20:21:00] + '[' -z gnutime ']'
[2025-07-11 20:21:00] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-11 20:21:00] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-07-11 20:21:00] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-07-06/BOINC_MCORE/6721000726.out
[2025-07-11 20:21:00] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-07-06/BOINC_MCORE/6721000726.out
[2025-07-11 20:21:00] + export PILOT_NOKILL=YES
[2025-07-11 20:21:00] + PILOT_NOKILL=YES
[2025-07-11 20:21:00] + export GRID_GLOBAL_JOBID=vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm
[2025-07-11 20:21:00] + GRID_GLOBAL_JOBID=vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm
[2025-07-11 20:21:00] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm
[2025-07-11 20:21:00] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm
[2025-07-11 20:21:00] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-11 20:21:00] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-07-11 20:21:00] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-07-11 20:21:00] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-07-11 20:21:00] ++ pwd
[2025-07-11 20:21:00] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot76/slots/0
[2025-07-11 20:21:00] + RUNTIME_JOB_STDIN=/dev/null
[2025-07-11 20:21:00] ++ pwd
[2025-07-11 20:21:00] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot76/slots/0/log.45482148._012223.job.log.1
[2025-07-11 20:21:00] ++ pwd
[2025-07-11 20:21:00] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot76/slots/0/log.45482148._012223.job.log.1
[2025-07-11 20:21:00] ++ pwd
[2025-07-11 20:21:00] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/0.diag
[2025-07-11 20:21:00] + '[' '!' -z '' ']'
[2025-07-11 20:21:00] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-07-11 20:21:00] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-07-11 20:21:00] + RUNTIME_FRONTEND_SEES_NODE=
[2025-07-11 20:21:00] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-07-11 20:21:00] + '[' '!' -z '' ']'
[2025-07-11 20:21:00] + '[' -z yes ']'
[2025-07-11 20:21:00] ++ pwd
[2025-07-11 20:21:00] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot76/slots/0/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm.diag
[2025-07-11 20:21:00] + runtimeenvironments=
[2025-07-11 20:21:00] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-11 20:21:00] + RTE_function_0 1
[2025-07-11 20:21:00] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 20:21:00] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 20:21:00] + export BOINC_APP=ATLAS
[2025-07-11 20:21:00] + BOINC_APP=ATLAS
[2025-07-11 20:21:00] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 20:21:00] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 20:21:00] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 20:21:00] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 20:21:00] + '[' -z 1 ']'
[2025-07-11 20:21:00] + '[' 1 == 1 ']'
[2025-07-11 20:21:00] + shift
[2025-07-11 20:21:00] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/0/
[2025-07-11 20:21:00] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot76/slots/0/
[2025-07-11 20:21:00] + '[' 0 -ne 0 ']'
[2025-07-11 20:21:00] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-07-11 20:21:00] + '[' -f /etc/os-release ']'
[2025-07-11 20:21:00] +++ cat /etc/os-release
[2025-07-11 20:21:00] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-07-11 20:21:00] +++ NAME='CentOS Linux'
[2025-07-11 20:21:00] +++ VERSION='7 (Core)'
[2025-07-11 20:21:00] +++ ID=centos
[2025-07-11 20:21:00] +++ ID_LIKE='rhel fedora'
[2025-07-11 20:21:00] +++ VERSION_ID=7
[2025-07-11 20:21:00] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-07-11 20:21:00] +++ ANSI_COLOR='0;31'
[2025-07-11 20:21:00] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-07-11 20:21:00] +++ HOME_URL=https://www.centos.org/
[2025-07-11 20:21:00] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-07-11 20:21:00] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-07-11 20:21:00] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-07-11 20:21:00] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-07-11 20:21:00] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-07-11 20:21:00] ++ echo 'CentOS Linux 7 (Core)'
[2025-07-11 20:21:00] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-07-11 20:21:00] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-07-11 20:21:00] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-07-11 20:21:00] + HOME=/scratch/boinc/var/slot76/slots/0
[2025-07-11 20:21:00] + export HOME
[2025-07-11 20:21:00] + cd /scratch/boinc/var/slot76/slots/0
[2025-07-11 20:21:00] + '[' '!' -z '' ']'
[2025-07-11 20:21:00] + '[' -z '' ']'
[2025-07-11 20:21:00] ++ /bin/hostname -f
[2025-07-11 20:21:00] + nodename=skurut10.grid.cesnet.cz
[2025-07-11 20:21:00] + echo nodename=skurut10.grid.cesnet.cz
[2025-07-11 20:21:00] + echo Processors=2
[2025-07-11 20:21:00] + echo Nodecount=1
[2025-07-11 20:21:00] + echo Benchmark=HEPSPEC:1.0
[2025-07-11 20:21:00] + executable=./runpilot2-wrapper.sh
[2025-07-11 20:21:00] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-07-11 20:21:00] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-07-11 20:21:00] ++ head -n 1
[2025-07-11 20:21:00] ++ tr -d '\0'
[2025-07-11 20:21:00] + line1='#!/bin/bash'
[2025-07-11 20:21:00] ++ echo '#!/bin/bash'
[2025-07-11 20:21:00] ++ sed -n 's/^#! *//p'
[2025-07-11 20:21:00] + shebang=/bin/bash
[2025-07-11 20:21:00] ++ echo /bin/bash
[2025-07-11 20:21:00] ++ awk '{print $1}'
[2025-07-11 20:21:00] + interpreter=/bin/bash
[2025-07-11 20:21:00] + '[' /bin/bash = /usr/bin/env ']'
[2025-07-11 20:21:00] + '[' x/bin/bash = x ']'
[2025-07-11 20:21:00] + type /bin/bash
[2025-07-11 20:21:00] + '[' xgnutime = xgnutime ']'
[2025-07-11 20:21:00] + /usr/bin/time -o /scratch/boinc/var/slot76/slots/0/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.4.12 -z -t --piloturl local --mute --container
[2025-07-11 20:21:00] + RESULT=2
[2025-07-11 20:21:00] + sed -i -e /nodename=/d /scratch/boinc/var/slot76/slots/0/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm.diag
[2025-07-11 20:21:00] ++ grep domain_name init_data.xml
[2025-07-11 20:21:00] ++ awk -F '>' '{print $2}'
[2025-07-11 20:21:00] ++ awk -F '<' '{print $1}'
[2025-07-11 20:21:00] ++ sed -e 's# #_#g'
[2025-07-11 20:21:00] + hostname=skurut10.grid.cesnet.cz
[2025-07-11 20:21:00] ++ grep user_name init_data.xml
[2025-07-11 20:21:00] ++ awk -F '>' '{print $2}'
[2025-07-11 20:21:00] ++ awk -F '<' '{print $1}'
[2025-07-11 20:21:00] ++ sed -e 's# #_#g'
[2025-07-11 20:21:00] + username=praguelcg2
[2025-07-11 20:21:00] + nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-07-11 20:21:00] + echo nodename=praguelcg2@skurut10.grid.cesnet.cz
[2025-07-11 20:21:00] + '[' -n 4 ']'
[2025-07-11 20:21:00] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot76/slots/0/vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm.diag
[2025-07-11 20:21:00] + echo exitcode=2
[2025-07-11 20:21:00] + runtimeenvironments=
[2025-07-11 20:21:00] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-07-11 20:21:00] + RTE_function_0 2
[2025-07-11 20:21:00] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 20:21:00] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-07-11 20:21:00] + export BOINC_APP=ATLAS
[2025-07-11 20:21:00] + BOINC_APP=ATLAS
[2025-07-11 20:21:00] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 20:21:00] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-07-11 20:21:00] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 20:21:00] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-07-11 20:21:00] + '[' -z 2 ']'
[2025-07-11 20:21:00] + '[' 2 == 1 ']'
[2025-07-11 20:21:00] + '[' 0 -ne 0 ']'
[2025-07-11 20:21:00] + echo 'zip all output files'
[2025-07-11 20:21:00] + flist='*.diag '
[2025-07-11 20:21:00] + for f in ./heartbeat.json ./output.list ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1 ./gmlog/
[2025-07-11 20:21:00] + '[' -e ./heartbeat.json ']'
[2025-07-11 20:21:00] + flist='*.diag  ./heartbeat.json'
[2025-07-11 20:21:00] + for f in ./heartbeat.json ./output.list ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1 ./gmlog/
[2025-07-11 20:21:00] + '[' -e ./output.list ']'
[2025-07-11 20:21:00] + for f in ./heartbeat.json ./output.list ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1 ./gmlog/
[2025-07-11 20:21:00] + '[' -e ./log.45482148._012223.job.log.1 ']'
[2025-07-11 20:21:00] + flist='*.diag  ./heartbeat.json ./log.45482148._012223.job.log.1'
[2025-07-11 20:21:00] + for f in ./heartbeat.json ./output.list ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1 ./gmlog/
[2025-07-11 20:21:00] + '[' -e ./log.45482148._012223.job.log.1 ']'
[2025-07-11 20:21:00] + flist='*.diag  ./heartbeat.json ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1'
[2025-07-11 20:21:00] + for f in ./heartbeat.json ./output.list ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1 ./gmlog/
[2025-07-11 20:21:00] + '[' -e ./gmlog/ ']'
[2025-07-11 20:21:00] + '[' -f output.list ']'
[2025-07-11 20:21:00] + tar cvf result.tar.gz vYtNDm75ks7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0DrKDmENkQnm.diag ./heartbeat.json ./log.45482148._012223.job.log.1 ./log.45482148._012223.job.log.1
[2025-07-11 20:21:00] + '[' xgnutime = xcgroup ']'
[2025-07-11 20:21:00] + '[' -n '' ']'
[2025-07-11 20:21:00] + '[' -n '' ']'
[2025-07-11 20:21:00] ++ date +%s
[2025-07-11 20:21:00] + ACCOUNTING_ENDTIME=1752257989
[2025-07-11 20:21:00] ++ date -d '1970-01-01 UTC 1752257798 seconds' +%Y%m%d%H%M%SZ
[2025-07-11 20:21:00] + echo LRMSStartTime=20250711201638Z
[2025-07-11 20:21:00] ++ date -d '1970-01-01 UTC 1752257989 seconds' +%Y%m%d%H%M%SZ
[2025-07-11 20:21:00] + echo LRMSEndTime=20250711201949Z
[2025-07-11 20:21:00] + echo walltime=191
[2025-07-11 20:21:00] + echo exitcode=2
[2025-07-11 20:21:00] + exit 2
[2025-07-11 20:21:00] ./pilotlog.txt
[2025-07-11 20:21:00] ./log.45482148._012223.job.log.1
[2025-07-11 20:21:00] ./runtime_log
[2025-07-11 20:21:00] ./PanDA_Pilot-6721000726/pilotlog.txt
[2025-07-11 20:21:00] ./PanDA_Pilot-6721000726/log.EVNTtoHITS
[2025-07-11 20:21:00] ./PanDA_Pilot-6721000726/PoolFileCatalog.xml
[2025-07-11 20:21:00] ./PanDA_Pilot-6721000726/prmon.log
[2025-07-11 20:21:00] ./runtime_log.err
[2025-07-11 20:21:00] ./pilot3/pilot/util/realtimelogger.py
[2025-07-11 20:21:00] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-07-11 20:21:00] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-07-11 20:21:00] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-07-11 20:21:00] ./pilot3/pilot/util/loggingsupport.py
[2025-07-11 20:21:00] ./pilot3/pilot/util/lokirealtimelogger.py
20:39:17 (959792): run_atlas exited; CPU time 17.616893
20:39:17 (959792): app exit status: 0x1
20:39:17 (959792): called boinc_finish(195)

</stderr_txt>
]]>

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