Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-11 18:20:05 (14568): Detected: vboxwrapper 26206
2025-07-11 18:20:05 (14568): Detected: BOINC client v8.0.2
2025-07-11 18:20:06 (14568): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-07-11 18:20:06 (14568): Successfully copied 'init_data.xml' to the shared directory.
2025-07-11 18:20:07 (14568): Create VM. (boinc_9abe55af03e8b2e5, slot#2)
2025-07-11 18:20:08 (14568): Setting Memory Size for VM. (4800MB)
2025-07-11 18:20:08 (14568): Setting CPU Count for VM. (8)
2025-07-11 18:20:08 (14568): Setting Chipset Options for VM.
2025-07-11 18:20:08 (14568): Setting Graphics Controller Options for VM.
2025-07-11 18:20:09 (14568): Setting Boot Options for VM.
2025-07-11 18:20:09 (14568): Setting Network Configuration for NAT.
2025-07-11 18:20:09 (14568): Enabling VM Network Access.
2025-07-11 18:20:09 (14568): Disabling USB Support for VM.
2025-07-11 18:20:10 (14568): Disabling COM Port Support for VM.
2025-07-11 18:20:10 (14568): Disabling LPT Port Support for VM.
2025-07-11 18:20:10 (14568): Disabling Audio Support for VM.
2025-07-11 18:20:10 (14568): Disabling Clipboard Support for VM.
2025-07-11 18:20:11 (14568): Disabling Drag and Drop Support for VM.
2025-07-11 18:20:11 (14568): Adding storage controller(s) to VM.
2025-07-11 18:20:11 (14568): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-11 18:20:14 (14568): Adding VirtualBox Guest Additions to VM.
2025-07-11 18:20:14 (14568): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-11 18:20:14 (14568): forwarding host port 54380 to guest port 80
2025-07-11 18:20:15 (14568): Enabling remote desktop for VM.
2025-07-11 18:20:15 (14568): Required extension pack not installed, remote desktop not enabled.
2025-07-11 18:20:15 (14568): Enabling shared directory for VM.
2025-07-11 18:20:16 (14568): Starting VM using VBoxManage interface. (boinc_9abe55af03e8b2e5, slot#2)
2025-07-11 18:20:22 (14568): Successfully started VM. (PID = '15340')
2025-07-11 18:20:22 (14568): Reporting VM Process ID to BOINC.
2025-07-11 18:20:22 (14568): Guest Log: BIOS: VirtualBox 7.1.4
2025-07-11 18:20:22 (14568): Guest Log: CPUID EDX: 0x178bfbff
2025-07-11 18:20:22 (14568): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-11 18:20:22 (14568): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-11 18:20:22 (14568): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-11 18:20:22 (14568): Detected: Web Application Enabled (http://localhost:54380)
2025-07-11 18:20:22 (14568): Preference change detected
2025-07-11 18:20:22 (14568): Setting CPU throttle for VM. (100%)
2025-07-11 18:20:23 (14568): Setting network throttle for VM. (1536KB)
2025-07-11 18:20:23 (14568): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-11 18:20:24 (14568): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-11 18:20:24 (14568): Guest Log: BIOS: Booting from Hard Disk...
2025-07-11 18:20:28 (14568): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-11 18:20:28 (14568): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-11 18:20:28 (14568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-11 18:20:37 (14568): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-11 18:20:37 (14568): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-11 18:20:52 (14568): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-11 18:20:52 (14568): Guest Log: 00:00:00.000566 main     Log opened 2025-07-11T18:20:51.025431000Z
2025-07-11 18:20:52 (14568): Guest Log: 00:00:00.000998 main     OS Product: Linux
2025-07-11 18:20:52 (14568): Guest Log: 00:00:00.001110 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-11 18:20:52 (14568): Guest Log: 00:00:00.001206 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-11 18:20:52 (14568): Guest Log: 00:00:00.001314 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-11 18:20:52 (14568): Guest Log: 00:00:00.001318 main     Process ID: 1379
2025-07-11 18:20:52 (14568): Guest Log: 00:00:00.001321 main     Package type: LINUX_64BITS_GENERIC
2025-07-11 18:20:52 (14568): Guest Log: 00:00:00.004202 main     5.2.32 r132073 started. Verbose level = 0
2025-07-11 18:20:52 (14568): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-11 18:20:52 (14568): Guest Log: [INFO] Mounting shared directory
2025-07-11 18:20:52 (14568): Guest Log: [INFO] Checking for init_data.xml
2025-07-11 18:20:59 (14568): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-11 18:20:59 (14568): Guest Log: [INFO] Detected branch: prod
2025-07-11 18:20:59 (14568): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-11 18:20:59 (14568): Guest Log: Copying input files
2025-07-11 18:21:02 (14568): Guest Log: Copied input files into RunAtlas.
2025-07-11 18:21:02 (14568): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-11 18:21:02 (14568): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-11 18:21:02 (14568): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-11 18:21:02 (14568): Guest Log: Further information can be found at the LHC@home message board.
2025-07-11 18:21:02 (14568): Guest Log: 00:00:10.008158 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 744 291 000ns (GuestNow=1 752 247 262 287 372 000 ns GuestLast=1 752 258 051 031 663 000 ns fSetTimeLastLoop=true )
2025-07-11 18:21:13 (14568): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-11 18:21:13 (14568): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-11 18:21:13 (14568): Guest Log: 2.6.3.0 1655 0 32224 148203 4 1 3117618 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-11 18:21:15 (14568): Guest Log: copied the webapp to /var/www
2025-07-11 18:21:15 (14568): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-11 18:21:15 (14568): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-11 18:21:15 (14568): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-11 18:21:15 (14568): Guest Log:  *** Starting ATLAS job. (PandaID=6720709147 taskID=45482148) ***
2025-07-11 20:00:27 (14568): Status Report: Elapsed Time: '6000.000000'
2025-07-11 20:00:27 (14568): Status Report: CPU Time: '38678.734375'
2025-07-11 21:40:32 (14568): Status Report: Elapsed Time: '12000.000000'
2025-07-11 21:40:32 (14568): Status Report: CPU Time: '85079.156250'
2025-07-11 22:56:23 (14568): Guest Log:  *** Job finished ***
2025-07-11 22:56:23 (14568): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:08,407 | INFO     | end of generic workflow (traces error code: 0)
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:08,407 | INFO     | traces error code: 0
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:08,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:19,068 | INFO     | 16421s have passed since pilot start - server update state is 'UPDATING_FINAL'
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,177 | INFO     | PID=6006 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,177 | INFO     | found 0 job(s) in 20 queues
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,177 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,177 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,178 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,178 | INFO     | [monitor] control thread has ended
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,387 [wrapper] ==== pilot stdout END ====
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,399 [wrapper] ==== wrapper stdout RESUME ====
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,412 [wrapper] pilotpid: 6006
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,422 [wrapper] Pilot exit status: 0
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,545 [wrapper] pandaids: 6720709147
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,621 [wrapper] cleanup supervisor_pilot 15238 6007
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,633 [wrapper] Test setup, not cleaning
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,644 [wrapper] apfmon messages muted
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,653 [wrapper] ==== wrapper stdout END ====
2025-07-11 22:56:23 (14568): Guest Log: 2025-07-11 19:56:20,661 [wrapper] ==== wrapper stderr END ====
2025-07-11 22:56:23 (14568): Guest Log:  *** Error codes and diagnostics ***
2025-07-11 22:56:23 (14568): Guest Log:     "exeErrorCode": 0,
2025-07-11 22:56:23 (14568): Guest Log:     "exeErrorDiag": "",
2025-07-11 22:56:23 (14568): Guest Log:     "pilotErrorCode": 0,
2025-07-11 22:56:23 (14568): Guest Log:     "pilotErrorDiag": "",
2025-07-11 22:56:23 (14568): Guest Log:  *** Listing of results directory ***
2025-07-11 22:56:23 (14568): Guest Log: total 265048
2025-07-11 22:56:23 (14568): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul  6 00:47 pilot3.tar.gz
2025-07-11 22:56:23 (14568): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul  6 00:48 queuedata.json
2025-07-11 22:56:23 (14568): Guest Log: -rwx------. 1 atlas atlas     36292 Jul  6 00:49 runpilot2-wrapper.sh
2025-07-11 22:56:23 (14568): Guest Log: -rwxr-xr-x. 1 atlas atlas      9104 Jul 11 15:21 init_data.xml
2025-07-11 22:56:23 (14568): Guest Log: -rwxr-xr-x. 1 atlas atlas    542912 Jul 11 15:21 input.tar.gz
2025-07-11 22:56:23 (14568): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 11 15:21 start_atlas.sh
2025-07-11 22:56:23 (14568): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 11 15:21 EVNT.45482146._000350.pool.root.1 -> /data/./ATLAS.root_0
2025-07-11 22:56:23 (14568): Guest Log: -rw-r--r--. 1 atlas atlas      2615 Jul 11 15:21 pandaJob.out
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas    976931 Jul 11 15:22 agis_schedconf.cvmfs.json
2025-07-11 22:56:23 (14568): Guest Log: drwx------. 4 atlas atlas      4096 Jul 11 15:22 pilot3
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas 264148583 Jul 11 19:54 HITS.45482148._008739.pool.root.1
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas      1048 Jul 11 19:55 memory_monitor_summary.json
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas   1588641 Jul 11 19:55 agis_ddmendpoints.agis.ALL.json
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas    394030 Jul 11 19:55 log.45482148._008739.job.log.tgz.1
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas        95 Jul 11 19:55 pilot_heartbeat.json
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas      7800 Jul 11 19:55 heartbeat.json
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas       860 Jul 11 19:56 pilotlog.txt
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas   1333421 Jul 11 19:56 log.45482148._008739.job.log.1
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas       357 Jul 11 19:56 output.list
2025-07-11 22:56:23 (14568): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 11 19:56 runtime_log
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas   1751040 Jul 11 19:56 result.tar.gz
2025-07-11 22:56:23 (14568): Guest Log: -rw-r--r--. 1 atlas atlas      8566 Jul 11 19:56 runtime_log.err
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas       652 Jul 11 19:56 EKlLDmNkSs7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsfBLDmqaEoXo.diag
2025-07-11 22:56:23 (14568): Guest Log: Looking for outputfile HITS.45482148._008739.pool.root.1
2025-07-11 22:56:23 (14568): Guest Log: HITS file was successfully produced
2025-07-11 22:56:23 (14568): Guest Log: -rw-------. 1 atlas atlas 264148583 Jul 11 19:54 /home/atlas/RunAtlas/HITS.45482148._008739.pool.root.1
2025-07-11 22:56:26 (14568): Guest Log: Successfully finished the ATLAS job!
2025-07-11 22:56:26 (14568): Guest Log: Copying the results back to the shared directory!
2025-07-11 22:56:26 (14568): Guest Log:  *** Contents of shared directory: ***
2025-07-11 22:56:26 (14568): Guest Log: total 570488
2025-07-11 22:56:26 (14568): Guest Log: -rwxrwxrwx. 1 root root 317690611 Jul 11 15:20 ATLAS.root_0
2025-07-11 22:56:26 (14568): Guest Log: -rwxrwxrwx. 1 root root 264148583 Jul 11 19:56 HITS.pool.root.1
2025-07-11 22:56:26 (14568): Guest Log: -rwxrwxrwx. 1 root root      9104 Jul 11 15:20 init_data.xml
2025-07-11 22:56:26 (14568): Guest Log: -rwxrwxrwx. 1 root root    542912 Jul  6 12:39 input.tar.gz
2025-07-11 22:56:26 (14568): Guest Log: -rwxrwxrwx. 1 root root   1751040 Jul 11 19:56 result.tar.gz
2025-07-11 22:56:26 (14568): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul  6 12:39 start_atlas.sh
2025-07-11 22:56:26 (14568): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-11 22:56:26 (14568): VM Completion File Detected.
2025-07-11 22:56:26 (14568): Powering off VM.
2025-07-11 22:56:27 (14568): Successfully stopped VM.
2025-07-11 22:56:27 (14568): Deregistering VM. (boinc_9abe55af03e8b2e5, slot#2)
2025-07-11 22:56:27 (14568): Removing network bandwidth throttle group from VM.
2025-07-11 22:56:27 (14568): Removing VM from VirtualBox.
22:56:32 (14568): called boinc_finish(0)

</stderr_txt>
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