Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:23:15 (559696): wrapper (7.7.26015): starting
07:23:15 (559696): wrapper: running run_atlas (--nthreads 12)
[2025-07-05 07:23:15] Arguments: --nthreads 12
[2025-07-05 07:23:15] Threads: 12
[2025-07-05 07:23:15] Checking for CVMFS
[2025-07-05 07:23:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-05 07:23:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-05 07:23:16] Running cvmfs_config stat atlas.cern.ch
[2025-07-05 07:23:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-05 07:23:18] 2.11.5.0 7126 5576 204068 147969 0 86 38123929 45568001 12124 130560 0 48474192 99.765 25333356 24769 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-05 07:23:18] CVMFS is ok
[2025-07-05 07:23:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-05 07:23:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-05 07:23:18] Further information can be found at the LHC@home message board.
[2025-07-05 07:23:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-05 07:23:18] Checking for apptainer binary...
[2025-07-05 07:23:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-05 07:23:18] Running /usr/bin/apptainer --version
[2025-07-05 07:23:18] apptainer version 1.4.1-1.el9
[2025-07-05 07:23:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-05 07:23:19] wns0062.triumf.lcg
[2025-07-05 07:23:19] apptainer works
[2025-07-05 07:23:19] Set ATHENA_PROC_NUMBER=12
[2025-07-05 07:23:19] Set ATHENA_CORE_NUMBER=12
[2025-07-05 07:23:19] Starting ATLAS job with PandaID=6720635319
[2025-07-05 07:23:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-05 07:29:42]  *** The last 200 lines of the pilot log: ***
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | INFO     | extracted standard memory fields from prmon json
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | WARNING  | wrong length of table data, x=[1751725569.0], y=[3584.0] (must be same and length>=4)
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | could have reported an average CPU frequency of 2595 MHz (4 samples)
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | ..............................
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . Timing measurements:
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . get job = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . initial setup = 7 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . payload setup = 30 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . stage-in = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . payload execution = 59 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . stage-out = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . log creation = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | ..............................
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6720635319/pilotlog.txt
[2025-07-05 07:29:42] 2025-07-05 14:29:06,555 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-05 07:29:42] - Log from pilotlog.txt -
[2025-07-05 07:29:42] 2025-07-05 14:29:06,542 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6720635319/memory_monitor_summary.json (trf name=prmon)
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | INFO     | extracted standard info from prmon json
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | INFO     | extracted standard memory fields from prmon json
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | WARNING  | wrong length of table data, x=[1751725569.0], y=[3584.0] (must be same and length>=4)
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | could have reported an average CPU frequency of 2595 MHz (4 samples)
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | ..............................
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . Timing measurements:
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . get job = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . initial setup = 7 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . payload setup = 30 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . stage-in = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . payload execution = 59 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . stage-out = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . log creation = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | ..............................
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6720635319/pilotlog.txt
[2025-07-05 07:29:42] 2025-07-05 14:29:06,555 | WARNING  | 
[2025-07-05 07:29:42] [begin log extracts]
[2025-07-05 07:29:42] - Log from pilotlog.txt -
[2025-07-05 07:29:42] 2025-07-05 14:29:06,542 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6720635319/memory_monitor_summary.json (trf name=prmon)
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | INFO     | extracted standard info from prmon json
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | INFO     | extracted standard memory fields from prmon json
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-05 07:29:42] 2025-07-05 14:29:06,543 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | WARNING  | wrong length of table data, x=[1751725569.0], y=[3584.0] (must be same and length>=4)
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | could have reported an average CPU frequency of 2595 MHz (4 samples)
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | ..............................
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . Timing measurements:
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . get job = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . initial setup = 7 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . payload setup = 30 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . stage-in = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . payload execution = 59 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . stage-out = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | . log creation = 0 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | ..............................
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-05 07:29:42] 2025-07-05 14:29:06,544 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6720635319/pilotlog.txt
[2025-07-05 07:29:42] [end log extracts]
[2025-07-05 07:29:42] 2025-07-05 14:29:06,555 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-05 07:29:42] 2025-07-05 14:29:06,556 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-05 07:29:42] 2025-07-05 14:29:06,969 | INFO     | 
[2025-07-05 07:29:42] 2025-07-05 14:29:06,969 | INFO     | job summary report
[2025-07-05 07:29:42] 2025-07-05 14:29:06,969 | INFO     | --------------------------------------------------
[2025-07-05 07:29:42] 2025-07-05 14:29:06,969 | INFO     | PanDA job id: 6720635319
[2025-07-05 07:29:42] 2025-07-05 14:29:06,969 | INFO     | task id: 45482148
[2025-07-05 07:29:42] 2025-07-05 14:29:06,969 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-05 07:26:41,632 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-05 07:29:42] 2025-07-05 14:29:06,969 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-05 07:29:42] 2025-07-05 14:29:06,969 | INFO     | pilot state: failed 
[2025-07-05 07:29:42] 2025-07-05 14:29:06,969 | INFO     | transexitcode: 65
[2025-07-05 07:29:42] 2025-07-05 14:29:06,969 | INFO     | exeerrorcode: 65
[2025-07-05 07:29:42] 2025-07-05 14:29:06,969 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | exitcode: 65
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | cpuconsumptiontime: 16 s
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | nevents: 0
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | neventsw: 0
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | pid: 569685
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | pgrp: 569685
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | corecount: 12
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | event service: False
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | sizes: {0: 2366404, 1: 2366488, 2: 2366659, 3: 2366715, 14: 2366715, 22: 2367005, 25: 2367161, 94: 2390443, 95: 2394735, 96: 2394763, 230: 2394929}
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | --------------------------------------------------
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | 
[2025-07-05 07:29:42] 2025-07-05 14:29:06,970 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-05 07:29:42] 2025-07-05 14:29:07,036 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,036 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,036 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,036 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,036 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,036 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | job 6720635319 has completed (purged errors)
[2025-07-05 07:29:42] 2025-07-05 14:29:07,037 | INFO     | overall cleanup function is called
[2025-07-05 07:29:42] 2025-07-05 14:29:08,047 | INFO     | --- collectZombieJob: --- 10, [569685]
[2025-07-05 07:29:42] 2025-07-05 14:29:08,047 | INFO     | zombie collector waiting for pid 569685
[2025-07-05 07:29:42] 2025-07-05 14:29:08,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-05 07:29:42] 2025-07-05 14:29:08,047 | INFO     | collected zombie processes
[2025-07-05 07:29:42] 2025-07-05 14:29:08,047 | INFO     | will attempt to kill all subprocesses of pid=569685
[2025-07-05 07:29:42] 2025-07-05 14:29:08,409 | INFO     | process IDs to be killed: [569685] (in reverse order)
[2025-07-05 07:29:42] 2025-07-05 14:29:08,664 | WARNING  | found no corresponding commands to process id(s)
[2025-07-05 07:29:42] 2025-07-05 14:29:08,664 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-05 07:29:42] 2025-07-05 14:29:08,676 | INFO     | did not find any defunct processes belonging to 569685
[2025-07-05 07:29:42] 2025-07-05 14:29:08,695 | INFO     | did not find any defunct processes belonging to 569685
[2025-07-05 07:29:42] 2025-07-05 14:29:08,695 | INFO     | ready for new job
[2025-07-05 07:29:42] 2025-07-05 14:29:08,695 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-05 07:29:42] 2025-07-05 14:29:08,696 | INFO     | ***************************************
[2025-07-05 07:29:42] 2025-07-05 14:29:08,696 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-05 07:29:42] 2025-07-05 14:29:08,696 | INFO     | ***************************************
[2025-07-05 07:29:42] 2025-07-05 14:29:08,696 | INFO     | 
[2025-07-05 07:29:42] 2025-07-05 14:29:08,708 | INFO     | architecture information:
[2025-07-05 07:29:42] 2025-07-05 14:29:08,708 | INFO     | executing command: cat /etc/os-release
[2025-07-05 07:29:42] 2025-07-05 14:29:08,798 | INFO     | cat /etc/os-release:
[2025-07-05 07:29:42] NAME="CentOS Linux"
[2025-07-05 07:29:42] VERSION="7 (Core)"
[2025-07-05 07:29:42] ID="centos"
[2025-07-05 07:29:42] ID_LIKE="rhel fedora"
[2025-07-05 07:29:42] VERSION_ID="7"
[2025-07-05 07:29:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-05 07:29:42] ANSI_COLOR="0;31"
[2025-07-05 07:29:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-05 07:29:42] HOME_URL="https://www.centos.org/"
[2025-07-05 07:29:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-05 07:29:42] 
[2025-07-05 07:29:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-05 07:29:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-05 07:29:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-05 07:29:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-05 07:29:42] 
[2025-07-05 07:29:42] 2025-07-05 14:29:08,798 | INFO     | ***************************************
[2025-07-05 07:29:42] 2025-07-05 14:29:09,302 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-05 07:29:42] 2025-07-05 14:29:09,314 | INFO     | sufficient remaining disk space (2089736470528 B)
[2025-07-05 07:29:42] 2025-07-05 14:29:09,314 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-05 07:29:42] 2025-07-05 14:29:09,314 | INFO     | current server update state: UPDATING_FINAL
[2025-07-05 07:29:42] 2025-07-05 14:29:09,314 | INFO     | update_server=False
[2025-07-05 07:29:42] 2025-07-05 14:29:09,314 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-05 07:29:42] 2025-07-05 14:29:09,314 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-05 07:29:42] 2025-07-05 14:29:09,314 | INFO     | aborting loop
[2025-07-05 07:29:42] 2025-07-05 14:29:09,725 | INFO     | all data control threads have been joined
[2025-07-05 07:29:42] 2025-07-05 14:29:09,856 | INFO     | all payload control threads have been joined
[2025-07-05 07:29:42] 2025-07-05 14:29:09,873 | INFO     | all job control threads have been joined
[2025-07-05 07:29:42] 2025-07-05 14:29:10,267 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-05 07:29:42] 2025-07-05 14:29:10,320 | INFO     | [job] retrieve thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:10,320 | INFO     | [job] job monitor thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:10,414 | INFO     | [payload] validate_pre thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:10,414 | INFO     | [data] copytool_in thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:10,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-05 07:29:42] 2025-07-05 14:29:10,481 | INFO     | [job] create_data_payload thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:10,731 | INFO     | [data] control thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:10,862 | INFO     | [payload] control thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:10,879 | INFO     | [job] control thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:11,105 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:11,377 | INFO     | [payload] validate_post thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:11,530 | INFO     | [job] validate thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:11,633 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-05 07:29:42] 2025-07-05 14:29:11,720 | INFO     | [payload] execute_payloads thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:11,748 | INFO     | [payload] failed_post thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:12,475 | INFO     | [data] copytool_out thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:12,639 | INFO     | [job] queue monitor thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:14,281 | INFO     | [data] queue_monitor thread has finished
[2025-07-05 07:29:42] 2025-07-05 14:29:16,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139911574107968)>', '<ExcThread(monitor, started 139910228993792)>']
[2025-07-05 07:29:42] 2025-07-05 14:29:21,094 | INFO     | all workflow threads have been joined
[2025-07-05 07:29:42] 2025-07-05 14:29:21,094 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-05 07:29:42] 2025-07-05 14:29:21,094 | INFO     | traces error code: 0
[2025-07-05 07:29:42] 2025-07-05 14:29:21,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-05 07:29:42] 2025-07-05 14:29:40,605 | INFO     | PID=563311 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-05 07:29:42] 2025-07-05 14:29:40,606 | INFO     | .. there are 21 such processes running
[2025-07-05 07:29:42] 2025-07-05 14:29:40,606 | INFO     | found 0 job(s) in 20 queues
[2025-07-05 07:29:42] 2025-07-05 14:29:40,606 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-05 07:29:42] 2025-07-05 14:29:40,606 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-05 07:29:42] 2025-07-05 14:29:40,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-05 07:29:42] 2025-07-05 14:29:40,607 | INFO     | [monitor] control thread has ended
[2025-07-05 07:29:42] 2025-07-05 14:29:41,361 [wrapper] ==== pilot stdout END ====
[2025-07-05 07:29:42] 2025-07-05 14:29:41,390 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-05 07:29:42] 2025-07-05 14:29:41,399 [wrapper] pilotpid: 563311
[2025-07-05 07:29:42] 2025-07-05 14:29:41,404 [wrapper] Pilot exit status: 0
[2025-07-05 07:29:42] 2025-07-05 14:29:41,532 [wrapper] pandaids: 6720635319
[2025-07-05 07:29:42] 2025-07-05 14:29:41,988 [wrapper] cleanup supervisor_pilot  563317 563312
[2025-07-05 07:29:42] 2025-07-05 14:29:42,003 [wrapper] Test setup, not cleaning
[2025-07-05 07:29:42] 2025-07-05 14:29:42,015 [wrapper] apfmon messages muted
[2025-07-05 07:29:42] 2025-07-05 14:29:42,025 [wrapper] ==== wrapper stdout END ====
[2025-07-05 07:29:42] 2025-07-05 14:29:42,037 [wrapper] ==== wrapper stderr END ====
[2025-07-05 07:29:42]  *** Error codes and diagnostics ***
[2025-07-05 07:29:42]     "exeErrorCode": 65,
[2025-07-05 07:29:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-05 07:29:42]     "pilotErrorCode": 1305,
[2025-07-05 07:29:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-05 07:29:42]  *** Listing of results directory ***
[2025-07-05 07:29:42] total 315136
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc    530466 Jul  5 03:49 pilot3.tar.gz
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc      5112 Jul  5 03:51 queuedata.json
[2025-07-05 07:29:42] -rwx------. 1 boinc boinc     36292 Jul  5 03:52 runpilot2-wrapper.sh
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc       100 Jul  5 07:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-05 07:29:42] -rwxr-xr-x. 1 boinc boinc      7986 Jul  5 07:23 run_atlas
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc       105 Jul  5 07:23 job.xml
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc      6598 Jul  5 07:23 init_data.xml
[2025-07-05 07:29:42] -rw-r--r--. 2 boinc boinc 318643645 Jul  5 07:23 EVNT.45482146._000258.pool.root.1
[2025-07-05 07:29:42] -rw-r--r--. 2 boinc boinc     15095 Jul  5 07:23 start_atlas.sh
[2025-07-05 07:29:42] drwxrwx--x. 2 boinc boinc      4096 Jul  5 07:23 shared
[2025-07-05 07:29:42] -rw-r--r--. 2 boinc boinc    542915 Jul  5 07:23 input.tar.gz
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc         0 Jul  5 07:23 boinc_lockfile
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc      2614 Jul  5 07:23 pandaJob.out
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc    970033 Jul  5 07:24 agis_schedconf.cvmfs.json
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc   1574083 Jul  5 07:24 agis_ddmendpoints.agis.ALL.json
[2025-07-05 07:29:42] drwx------. 4 boinc boinc      4096 Jul  5 07:24 pilot3
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc       523 Jul  5 07:26 boinc_task_state.xml
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc       961 Jul  5 07:26 memory_monitor_summary.json
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc     21128 Jul  5 07:26 log.45482148._006430.job.log.tgz.1
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc      8408 Jul  5 07:29 heartbeat.json
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc       822 Jul  5 07:29 pilotlog.txt
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc        95 Jul  5 07:29 pilot_heartbeat.json
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc      8192 Jul  5 07:29 boinc_mmap_file
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc        22 Jul  5 07:29 wrapper_checkpoint.txt
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc     82280 Jul  5 07:29 log.45482148._006430.job.log.1
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc       188 Jul  5 07:29 output.list
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc       620 Jul  5 07:29 runtime_log
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc    122880 Jul  5 07:29 result.tar.gz
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc       646 Jul  5 07:29 vtzMDmngFs7n9Rq4apOajLDm4fhM0noT9bVof3QYDmNNpKDmIFbf9m.diag
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc      8485 Jul  5 07:29 runtime_log.err
[2025-07-05 07:29:42] -rw-r--r--. 1 boinc boinc     21825 Jul  5 07:29 stderr.txt
[2025-07-05 07:29:42] No HITS result produced
[2025-07-05 07:29:42]  *** Contents of shared directory: ***
[2025-07-05 07:29:42] total 311848
[2025-07-05 07:29:42] -rw-r--r--. 2 boinc boinc 318643645 Jul  5 07:23 ATLAS.root_0
[2025-07-05 07:29:42] -rw-r--r--. 2 boinc boinc     15095 Jul  5 07:23 start_atlas.sh
[2025-07-05 07:29:42] -rw-r--r--. 2 boinc boinc    542915 Jul  5 07:23 input.tar.gz
[2025-07-05 07:29:42] -rw-------. 1 boinc boinc    122880 Jul  5 07:29 result.tar.gz
07:29:44 (559696): run_atlas exited; CPU time 28.752169
07:29:44 (559696): called boinc_finish(0)

</stderr_txt>
]]>

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