Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:47:06 (933145): wrapper (7.7.26015): starting
05:47:06 (933145): wrapper: running run_atlas (--nthreads 12)
[2025-07-05 05:47:06] Arguments: --nthreads 12
[2025-07-05 05:47:06] Threads: 12
[2025-07-05 05:47:06] Checking for CVMFS
[2025-07-05 05:47:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-05 05:47:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-05 05:47:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-05 05:47:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-05 05:47:06] 2.11.5.0 11915 5330 231280 147966 1 237 38989630 45568001 10133 130560 0 33717023 99.552 40541562 20994 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-05 05:47:06] CVMFS is ok
[2025-07-05 05:47:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-05 05:47:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-05 05:47:06] Further information can be found at the LHC@home message board.
[2025-07-05 05:47:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-05 05:47:06] Checking for apptainer binary...
[2025-07-05 05:47:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-05 05:47:06] Running /usr/bin/apptainer --version
[2025-07-05 05:47:06] apptainer version 1.4.1-1.el9
[2025-07-05 05:47:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-05 05:47:07] wns0101.triumf.lcg
[2025-07-05 05:47:07] apptainer works
[2025-07-05 05:47:07] Set ATHENA_PROC_NUMBER=12
[2025-07-05 05:47:07] Set ATHENA_CORE_NUMBER=12
[2025-07-05 05:47:07] Starting ATLAS job with PandaID=6720617977
[2025-07-05 05:47:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-05 05:51:55]  *** The last 200 lines of the pilot log: ***
[2025-07-05 05:51:55] 2025-07-05 12:51:22,569 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-05 05:51:55] 2025-07-05 12:51:22,570 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-05 05:51:55] 2025-07-05 12:51:22,570 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | WARNING  | wrong length of table data, x=[1751719742.0], y=[662.0] (must be same and length>=4)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | could have reported an average CPU frequency of 2075 MHz (4 samples)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | ..............................
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . Timing measurements:
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . get job = 1 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . initial setup = 10 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . payload setup = 19 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . stage-in = 0 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | . payload execution = 28 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | . stage-out = 0 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | . log creation = 0 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | ..............................
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6720617977/pilotlog.txt
[2025-07-05 05:51:55] 2025-07-05 12:51:22,584 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-05 05:51:55] - Log from pilotlog.txt -
[2025-07-05 05:51:55] 2025-07-05 12:51:22,568 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6720617977/memory_monitor_summary.json (trf name=prmon)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,569 | INFO     | extracted standard info from prmon json
[2025-07-05 05:51:55] 2025-07-05 12:51:22,569 | INFO     | extracted standard memory fields from prmon json
[2025-07-05 05:51:55] 2025-07-05 12:51:22,569 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-05 05:51:55] 2025-07-05 12:51:22,570 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-05 05:51:55] 2025-07-05 12:51:22,570 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | WARNING  | wrong length of table data, x=[1751719742.0], y=[662.0] (must be same and length>=4)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | could have reported an average CPU frequency of 2075 MHz (4 samples)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | ..............................
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . Timing measurements:
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . get job = 1 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . initial setup = 10 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . payload setup = 19 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . stage-in = 0 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | . payload execution = 28 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | . stage-out = 0 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | . log creation = 0 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | ..............................
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6720617977/pilotlog.txt
[2025-07-05 05:51:55] 2025-07-05 12:51:22,585 | WARNING  | 
[2025-07-05 05:51:55] [begin log extracts]
[2025-07-05 05:51:55] - Log from pilotlog.txt -
[2025-07-05 05:51:55] 2025-07-05 12:51:22,568 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6720617977/memory_monitor_summary.json (trf name=prmon)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,569 | INFO     | extracted standard info from prmon json
[2025-07-05 05:51:55] 2025-07-05 12:51:22,569 | INFO     | extracted standard memory fields from prmon json
[2025-07-05 05:51:55] 2025-07-05 12:51:22,569 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-05 05:51:55] 2025-07-05 12:51:22,570 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-05 05:51:55] 2025-07-05 12:51:22,570 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | WARNING  | wrong length of table data, x=[1751719742.0], y=[662.0] (must be same and length>=4)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | could have reported an average CPU frequency of 2075 MHz (4 samples)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | ..............................
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . Timing measurements:
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . get job = 1 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . initial setup = 10 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . payload setup = 19 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,571 | INFO     | . stage-in = 0 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | . payload execution = 28 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | . stage-out = 0 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | . log creation = 0 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | ..............................
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-05 05:51:55] 2025-07-05 12:51:22,572 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6720617977/pilotlog.txt
[2025-07-05 05:51:55] [end log extracts]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,585 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,586 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-05 05:51:55] 2025-07-05 12:51:22,937 | INFO     | 
[2025-07-05 05:51:55] 2025-07-05 12:51:22,937 | INFO     | job summary report
[2025-07-05 05:51:55] 2025-07-05 12:51:22,937 | INFO     | --------------------------------------------------
[2025-07-05 05:51:55] 2025-07-05 12:51:22,937 | INFO     | PanDA job id: 6720617977
[2025-07-05 05:51:55] 2025-07-05 12:51:22,937 | INFO     | task id: 45482040
[2025-07-05 05:51:55] 2025-07-05 12:51:22,937 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-05 05:49:13,142 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-05 05:51:55] 2025-07-05 12:51:22,937 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | pilot state: failed 
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | transexitcode: 65
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | exeerrorcode: 65
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | exitcode: 65
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | cpuconsumptiontime: 19 s
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | nevents: 0
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | neventsw: 0
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | pid: 943059
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | pgrp: 943059
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | corecount: 12
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | event service: False
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | sizes: {0: 2366391, 1: 2366590, 2: 2366618, 13: 2366618, 15: 2366936, 24: 2366964, 50: 2390343, 51: 2390319, 53: 2394639, 54: 2394667, 173: 2394833}
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | --------------------------------------------------
[2025-07-05 05:51:55] 2025-07-05 12:51:22,938 | INFO     | 
[2025-07-05 05:51:55] 2025-07-05 12:51:22,939 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-05 05:51:55] 2025-07-05 12:51:22,957 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,958 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,959 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,959 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,959 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,959 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,959 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,959 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-05 05:51:55] 2025-07-05 12:51:22,959 | INFO     | job 6720617977 has completed (purged errors)
[2025-07-05 05:51:55] 2025-07-05 12:51:22,959 | INFO     | overall cleanup function is called
[2025-07-05 05:51:55] 2025-07-05 12:51:23,965 | INFO     | --- collectZombieJob: --- 10, [943059]
[2025-07-05 05:51:55] 2025-07-05 12:51:23,965 | INFO     | zombie collector waiting for pid 943059
[2025-07-05 05:51:55] 2025-07-05 12:51:23,965 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-05 05:51:55] 2025-07-05 12:51:23,966 | INFO     | collected zombie processes
[2025-07-05 05:51:55] 2025-07-05 12:51:23,966 | INFO     | will attempt to kill all subprocesses of pid=943059
[2025-07-05 05:51:55] 2025-07-05 12:51:24,144 | INFO     | process IDs to be killed: [943059] (in reverse order)
[2025-07-05 05:51:55] 2025-07-05 12:51:24,210 | WARNING  | found no corresponding commands to process id(s)
[2025-07-05 05:51:55] 2025-07-05 12:51:24,210 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-05 05:51:55] 2025-07-05 12:51:24,217 | INFO     | did not find any defunct processes belonging to 943059
[2025-07-05 05:51:55] 2025-07-05 12:51:24,224 | INFO     | did not find any defunct processes belonging to 943059
[2025-07-05 05:51:55] 2025-07-05 12:51:24,224 | INFO     | ready for new job
[2025-07-05 05:51:55] 2025-07-05 12:51:24,224 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-05 05:51:55] 2025-07-05 12:51:24,226 | INFO     | ***************************************
[2025-07-05 05:51:55] 2025-07-05 12:51:24,226 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-05 05:51:55] 2025-07-05 12:51:24,226 | INFO     | ***************************************
[2025-07-05 05:51:55] 2025-07-05 12:51:24,226 | INFO     | 
[2025-07-05 05:51:55] 2025-07-05 12:51:24,229 | INFO     | architecture information:
[2025-07-05 05:51:55] 2025-07-05 12:51:24,229 | INFO     | executing command: cat /etc/os-release
[2025-07-05 05:51:55] 2025-07-05 12:51:24,242 | INFO     | cat /etc/os-release:
[2025-07-05 05:51:55] NAME="CentOS Linux"
[2025-07-05 05:51:55] VERSION="7 (Core)"
[2025-07-05 05:51:55] ID="centos"
[2025-07-05 05:51:55] ID_LIKE="rhel fedora"
[2025-07-05 05:51:55] VERSION_ID="7"
[2025-07-05 05:51:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-05 05:51:55] ANSI_COLOR="0;31"
[2025-07-05 05:51:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-05 05:51:55] HOME_URL="https://www.centos.org/"
[2025-07-05 05:51:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-05 05:51:55] 
[2025-07-05 05:51:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-05 05:51:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-05 05:51:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-05 05:51:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-05 05:51:55] 
[2025-07-05 05:51:55] 2025-07-05 12:51:24,243 | INFO     | ***************************************
[2025-07-05 05:51:55] 2025-07-05 12:51:24,746 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-05 05:51:55] 2025-07-05 12:51:24,759 | INFO     | sufficient remaining disk space (2122013736960 B)
[2025-07-05 05:51:55] 2025-07-05 12:51:24,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-05 05:51:55] 2025-07-05 12:51:24,759 | INFO     | current server update state: UPDATING_FINAL
[2025-07-05 05:51:55] 2025-07-05 12:51:24,760 | INFO     | update_server=False
[2025-07-05 05:51:55] 2025-07-05 12:51:24,760 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-05 05:51:55] 2025-07-05 12:51:24,760 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-05 05:51:55] 2025-07-05 12:51:25,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-05 05:51:55] 2025-07-05 12:51:25,138 | INFO     | aborting loop
[2025-07-05 05:51:55] 2025-07-05 12:51:25,353 | INFO     | all data control threads have been joined
[2025-07-05 05:51:55] 2025-07-05 12:51:25,366 | INFO     | all payload control threads have been joined
[2025-07-05 05:51:55] 2025-07-05 12:51:25,479 | INFO     | all job control threads have been joined
[2025-07-05 05:51:55] 2025-07-05 12:51:25,765 | INFO     | [job] retrieve thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:26,042 | INFO     | [job] validate thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:26,103 | INFO     | [payload] validate_pre thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:26,146 | INFO     | [job] job monitor thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:26,153 | INFO     | [payload] execute_payloads thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:26,358 | INFO     | [data] control thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:26,370 | INFO     | [payload] control thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:26,484 | INFO     | [job] control thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:26,546 | INFO     | [job] create_data_payload thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:26,577 | INFO     | [data] copytool_in thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:26,627 | INFO     | [payload] validate_post thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:26,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-05 05:51:55] 2025-07-05 12:51:26,765 | INFO     | [data] copytool_out thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:27,038 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:27,179 | INFO     | [payload] failed_post thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:27,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-05 05:51:55] 2025-07-05 12:51:28,682 | INFO     | [job] queue monitor thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:30,637 | INFO     | [data] queue_monitor thread has finished
[2025-07-05 05:51:55] 2025-07-05 12:51:31,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955142121280)>', '<ExcThread(monitor, started 139954814420736)>']
[2025-07-05 05:51:55] 2025-07-05 12:51:36,347 | INFO     | all workflow threads have been joined
[2025-07-05 05:51:55] 2025-07-05 12:51:36,347 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-05 05:51:55] 2025-07-05 12:51:36,347 | INFO     | traces error code: 0
[2025-07-05 05:51:55] 2025-07-05 12:51:36,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-05 05:51:55] 2025-07-05 12:51:55,305 | INFO     | PID=936712 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-05 05:51:55] 2025-07-05 12:51:55,306 | INFO     | .. there are 14 such processes running
[2025-07-05 05:51:55] 2025-07-05 12:51:55,306 | INFO     | found 0 job(s) in 20 queues
[2025-07-05 05:51:55] 2025-07-05 12:51:55,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-05 05:51:55] 2025-07-05 12:51:55,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-05 05:51:55] 2025-07-05 12:51:55,307 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-05 05:51:55] 2025-07-05 12:51:55,307 | CRITICAL | thread 'MainThread' is not alive
[2025-07-05 05:51:55] 2025-07-05 12:51:55,307 | INFO     | [monitor] control thread has ended
[2025-07-05 05:51:55] 2025-07-05 12:51:55,438 [wrapper] ==== pilot stdout END ====
[2025-07-05 05:51:55] 2025-07-05 12:51:55,441 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-05 05:51:55] 2025-07-05 12:51:55,443 [wrapper] pilotpid: 936712
[2025-07-05 05:51:55] 2025-07-05 12:51:55,445 [wrapper] Pilot exit status: 0
[2025-07-05 05:51:55] 2025-07-05 12:51:55,454 [wrapper] pandaids: 6720617977
[2025-07-05 05:51:55] 2025-07-05 12:51:55,496 [wrapper] cleanup supervisor_pilot  936718 936713
[2025-07-05 05:51:55] 2025-07-05 12:51:55,499 [wrapper] Test setup, not cleaning
[2025-07-05 05:51:55] 2025-07-05 12:51:55,501 [wrapper] apfmon messages muted
[2025-07-05 05:51:55] 2025-07-05 12:51:55,503 [wrapper] ==== wrapper stdout END ====
[2025-07-05 05:51:55] 2025-07-05 12:51:55,505 [wrapper] ==== wrapper stderr END ====
[2025-07-05 05:51:55]  *** Error codes and diagnostics ***
[2025-07-05 05:51:55]     "exeErrorCode": 65,
[2025-07-05 05:51:55]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-05 05:51:55]     "pilotErrorCode": 1305,
[2025-07-05 05:51:55]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-05 05:51:55]  *** Listing of results directory ***
[2025-07-05 05:51:55] total 308568
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc    530466 Jul  5 02:13 pilot3.tar.gz
[2025-07-05 05:51:55] -rwx------. 1 boinc boinc     36292 Jul  5 02:22 runpilot2-wrapper.sh
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc      5112 Jul  5 02:22 queuedata.json
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc       100 Jul  5 05:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-05 05:51:55] -rwxr-xr-x. 1 boinc boinc      7986 Jul  5 05:47 run_atlas
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc       105 Jul  5 05:47 job.xml
[2025-07-05 05:51:55] -rw-r--r--. 2 boinc boinc 311919989 Jul  5 05:47 EVNT.45482038._000215.pool.root.1
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc      6593 Jul  5 05:47 init_data.xml
[2025-07-05 05:51:55] -rw-r--r--. 2 boinc boinc     15095 Jul  5 05:47 start_atlas.sh
[2025-07-05 05:51:55] drwxrwx--x. 2 boinc boinc      4096 Jul  5 05:47 shared
[2025-07-05 05:51:55] -rw-r--r--. 2 boinc boinc    542881 Jul  5 05:47 input.tar.gz
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc         0 Jul  5 05:47 boinc_lockfile
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc      2544 Jul  5 05:47 pandaJob.out
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc    970033 Jul  5 05:47 agis_schedconf.cvmfs.json
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc   1574083 Jul  5 05:47 agis_ddmendpoints.agis.ALL.json
[2025-07-05 05:51:55] drwx------. 4 boinc boinc      4096 Jul  5 05:47 pilot3
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc       523 Jul  5 05:49 boinc_task_state.xml
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc       943 Jul  5 05:49 memory_monitor_summary.json
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc     21435 Jul  5 05:49 log.45482040._005366.job.log.tgz.1
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc      8382 Jul  5 05:51 heartbeat.json
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc      8192 Jul  5 05:51 boinc_mmap_file
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc        22 Jul  5 05:51 wrapper_checkpoint.txt
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc       892 Jul  5 05:51 pilotlog.txt
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc        95 Jul  5 05:51 pilot_heartbeat.json
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc     78503 Jul  5 05:51 log.45482040._005366.job.log.1
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc       188 Jul  5 05:51 output.list
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc       620 Jul  5 05:51 runtime_log
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc    122880 Jul  5 05:51 result.tar.gz
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc      8485 Jul  5 05:51 runtime_log.err
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc       645 Jul  5 05:51 2J1MDm2GEs7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2OALDmu7SLPo.diag
[2025-07-05 05:51:55] -rw-r--r--. 1 boinc boinc     21812 Jul  5 05:51 stderr.txt
[2025-07-05 05:51:55] No HITS result produced
[2025-07-05 05:51:55]  *** Contents of shared directory: ***
[2025-07-05 05:51:55] total 305284
[2025-07-05 05:51:55] -rw-r--r--. 2 boinc boinc 311919989 Jul  5 05:47 ATLAS.root_0
[2025-07-05 05:51:55] -rw-r--r--. 2 boinc boinc     15095 Jul  5 05:47 start_atlas.sh
[2025-07-05 05:51:55] -rw-r--r--. 2 boinc boinc    542881 Jul  5 05:47 input.tar.gz
[2025-07-05 05:51:55] -rw-------. 1 boinc boinc    122880 Jul  5 05:51 result.tar.gz
05:51:56 (933145): run_atlas exited; CPU time 27.738313
05:51:56 (933145): called boinc_finish(0)

</stderr_txt>
]]>

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