Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
00:54:07 (114194): wrapper (7.7.26015): starting
00:54:07 (114194): wrapper: running run_atlas (--nthreads 12)
[2025-07-11 00:54:07] Arguments: --nthreads 12
[2025-07-11 00:54:07] Threads: 12
[2025-07-11 00:54:07] Checking for CVMFS
[2025-07-11 00:54:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-11 00:54:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-11 00:54:07] Running cvmfs_config stat atlas.cern.ch
[2025-07-11 00:54:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-11 00:54:08] 2.12.7.0 2923725 8932 66316 148176 0 187 3198169 4096000 903 130560 1 15442287 99.996 286400 107 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-11 00:54:08] CVMFS is ok
[2025-07-11 00:54:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-11 00:54:08] Checking for apptainer binary...
[2025-07-11 00:54:08] apptainer is not installed, using version from CVMFS
[2025-07-11 00:54:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-11 00:54:08] ryzen7
[2025-07-11 00:54:08] apptainer works
[2025-07-11 00:54:08] Set ATHENA_PROC_NUMBER=12
[2025-07-11 00:54:08] Set ATHENA_CORE_NUMBER=12
[2025-07-11 00:54:08] Starting ATLAS job with PandaID=6720585590
[2025-07-11 00:54:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31419/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-11 02:20:07]  *** The last 200 lines of the pilot log: ***
[2025-07-11 02:20:07]  is_altstaged=None
[2025-07-11 02:20:07]  is_tar=False
[2025-07-11 02:20:07]  lfn=log.45482062._001968.job.log.tgz.1
[2025-07-11 02:20:07]  mtime=0
[2025-07-11 02:20:07]  protocol_id=None
[2025-07-11 02:20:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-11 02:20:07]  replicas=None
[2025-07-11 02:20:07]  scope=mc23_13p6TeV
[2025-07-11 02:20:07]  status=None
[2025-07-11 02:20:07]  status_code=0
[2025-07-11 02:20:07]  storage_token=
[2025-07-11 02:20:07]  surl=/opt/boinc/instance_homes/boinc_31419/slots/0/PanDA_Pilot-6720585590/log.45482062._001968.job.log.tgz.1
[2025-07-11 02:20:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/76/log.45482062._001968.job.log.tgz.1
[2025-07-11 02:20:07]  workdir=None
[2025-07-11 02:20:07] ]
[2025-07-11 02:20:07] 2025-07-11 02:19:31,674 | INFO     | transferring file log.45482062._001968.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31419/slots/0/PanDA_Pilot-6720585590/log.45482062._001968.job.log.tgz.1 t
[2025-07-11 02:20:07] 2025-07-11 02:19:31,674 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31419/slots/0/PanDA_Pilot-6720585590/log.45482062._001968.job.log.tgz.1 /opt/boinc/instance_home
[2025-07-11 02:20:07] 2025-07-11 02:19:31,681 | INFO     | adding to output.list: log.45482062._001968.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/76/log.45482062._001968.job.log.tg
[2025-07-11 02:20:07] 2025-07-11 02:19:31,681 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-11 02:20:07] 2025-07-11 02:19:31,682 | INFO     | summary of transferred files:
[2025-07-11 02:20:07] 2025-07-11 02:19:31,682 | INFO     |  -- lfn=log.45482062._001968.job.log.tgz.1, status_code=0, status=transferred
[2025-07-11 02:20:07] 2025-07-11 02:19:31,682 | INFO     | stage-out finished correctly
[2025-07-11 02:20:07] 2025-07-11 02:19:31,709 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-11 02:20:07] 2025-07-11 02:19:31,774 | INFO     | monitor loop #382: job 0:6720585590 is in state 'finished'
[2025-07-11 02:20:07] 2025-07-11 02:19:31,774 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-11 02:20:07] 2025-07-11 02:19:34,277 | INFO     | monitor loop #383: job 0:6720585590 is in state 'finished'
[2025-07-11 02:20:07] 2025-07-11 02:19:34,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-11 02:20:07] 2025-07-11 02:19:34,444 | INFO     | job 6720585590 has state=finished
[2025-07-11 02:20:07] 2025-07-11 02:19:34,444 | INFO     | preparing for final server update for job 6720585590 in state='finished'
[2025-07-11 02:20:07] 2025-07-11 02:19:34,445 | INFO     | this job has now completed (state=finished)
[2025-07-11 02:20:07] 2025-07-11 02:19:34,445 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-11 02:20:07] 2025-07-11 02:19:34,445 | INFO     | log transfer has been attempted: DONE
[2025-07-11 02:20:07] 2025-07-11 02:19:34,445 | INFO     | job 6720585590 has finished - writing final server update
[2025-07-11 02:20:07] 2025-07-11 02:19:34,445 | INFO     | total number of processed events: 400 (read)
[2025-07-11 02:20:07] 2025-07-11 02:19:34,445 | INFO     | executing command: lscpu
[2025-07-11 02:20:07] 2025-07-11 02:19:34,476 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-11 02:20:07] 2025-07-11 02:19:35,279 | INFO     | PID=117921 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-11 02:20:07] 2025-07-11 02:19:35,925 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-11 02:20:07] 2025-07-11 02:19:35,927 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3517.6115625
[2025-07-11 02:20:07] 2025-07-11 02:19:35,929 | INFO     | using path: /opt/boinc/instance_homes/boinc_31419/slots/0/PanDA_Pilot-6720585590/memory_monitor_summary.json (trf name=prmon)
[2025-07-11 02:20:07] 2025-07-11 02:19:35,929 | INFO     | extracted standard info from prmon json
[2025-07-11 02:20:07] 2025-07-11 02:19:35,929 | INFO     | extracted standard memory fields from prmon json
[2025-07-11 02:20:07] 2025-07-11 02:19:35,929 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-11 02:20:07] 2025-07-11 02:19:35,929 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-11 02:20:07] 2025-07-11 02:19:35,929 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-11 02:20:07] 2025-07-11 02:19:35,930 | INFO     | fitting pss+swap vs Time
[2025-07-11 02:20:07] 2025-07-11 02:19:35,930 | INFO     | sum of square deviations: 141539398.0
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | sum of deviations: -4105351667.0
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | mean x: 1752197892.0
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | mean y: 2796037.987012987
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | -- intersect: 50825313573.606926
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | intersect: 50825313573.606926
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | chi2: 0.02554581720739295
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | -- intersect: 50825313573.606926
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | current memory leak: -29.01 B/s (using 77 data points, chi2=0.03)
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | could have reported an average CPU frequency of 3696 MHz (6 samples)
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | ..............................
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | . Timing measurements:
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | . get job = 0 s
[2025-07-11 02:20:07] 2025-07-11 02:19:35,931 | INFO     | . initial setup = 1 s
[2025-07-11 02:20:07] 2025-07-11 02:19:35,932 | INFO     | . payload setup = 2 s
[2025-07-11 02:20:07] 2025-07-11 02:19:35,932 | INFO     | . stage-in = 0 s
[2025-07-11 02:20:07] 2025-07-11 02:19:35,932 | INFO     | . payload execution = 5100 s
[2025-07-11 02:20:07] 2025-07-11 02:19:35,932 | INFO     | . stage-out = 0 s
[2025-07-11 02:20:07] 2025-07-11 02:19:35,932 | INFO     | . log creation = 0 s
[2025-07-11 02:20:07] 2025-07-11 02:19:35,932 | INFO     | ..............................
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | 
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | job summary report
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | --------------------------------------------------
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | PanDA job id: 6720585590
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | task id: 45482062
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | errors: (none)
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | pilot state: finished 
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | transexitcode: 0
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | exeerrorcode: 0
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | exeerrordiag: 
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | exitcode: 0
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | exitmsg: OK
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | cpuconsumptiontime: 36466 s
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | nevents: 400
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | neventsw: 0
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | pid: 124584
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | pgrp: 124584
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | corecount: 12
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | event service: False
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | sizes: {0: 2382129, 1: 2382391, 10: 2382419, 5106: 2417903, 5111: 2418041}
[2025-07-11 02:20:07] 2025-07-11 02:19:35,979 | INFO     | --------------------------------------------------
[2025-07-11 02:20:07] 2025-07-11 02:19:35,980 | INFO     | 
[2025-07-11 02:20:07] 2025-07-11 02:19:35,980 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31419/slots/0
[2025-07-11 02:20:07] 2025-07-11 02:19:35,987 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | job 6720585590 has completed (purged errors)
[2025-07-11 02:20:07] 2025-07-11 02:19:35,988 | INFO     | overall cleanup function is called
[2025-07-11 02:20:07] 2025-07-11 02:19:36,995 | INFO     | --- collectZombieJob: --- 10, [124584]
[2025-07-11 02:20:07] 2025-07-11 02:19:36,995 | INFO     | zombie collector waiting for pid 124584
[2025-07-11 02:20:07] 2025-07-11 02:19:36,995 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-11 02:20:07] 2025-07-11 02:19:36,995 | INFO     | collected zombie processes
[2025-07-11 02:20:07] 2025-07-11 02:19:36,995 | INFO     | will attempt to kill all subprocesses of pid=124584
[2025-07-11 02:20:07] 2025-07-11 02:19:37,039 | INFO     | process IDs to be killed: [124584] (in reverse order)
[2025-07-11 02:20:07] 2025-07-11 02:19:37,059 | WARNING  | found no corresponding commands to process id(s)
[2025-07-11 02:20:07] 2025-07-11 02:19:37,059 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-11 02:20:07] 2025-07-11 02:19:37,060 | INFO     | did not find any defunct processes belonging to 124584
[2025-07-11 02:20:07] 2025-07-11 02:19:37,061 | INFO     | did not find any defunct processes belonging to 124584
[2025-07-11 02:20:07] 2025-07-11 02:19:37,062 | INFO     | ready for new job
[2025-07-11 02:20:07] 2025-07-11 02:19:37,062 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-11 02:20:07] 2025-07-11 02:19:37,062 | INFO     | ***************************************
[2025-07-11 02:20:07] 2025-07-11 02:19:37,062 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-11 02:20:07] 2025-07-11 02:19:37,062 | INFO     | ***************************************
[2025-07-11 02:20:07] 2025-07-11 02:19:37,062 | INFO     | 
[2025-07-11 02:20:07] 2025-07-11 02:19:37,082 | INFO     | architecture information:
[2025-07-11 02:20:07] 2025-07-11 02:19:37,082 | INFO     | executing command: cat /etc/os-release
[2025-07-11 02:20:07] 2025-07-11 02:19:37,088 | INFO     | cat /etc/os-release:
[2025-07-11 02:20:07] NAME="CentOS Linux"
[2025-07-11 02:20:07] VERSION="7 (Core)"
[2025-07-11 02:20:07] ID="centos"
[2025-07-11 02:20:07] ID_LIKE="rhel fedora"
[2025-07-11 02:20:07] VERSION_ID="7"
[2025-07-11 02:20:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-11 02:20:07] ANSI_COLOR="0;31"
[2025-07-11 02:20:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-11 02:20:07] HOME_URL="https://www.centos.org/"
[2025-07-11 02:20:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-11 02:20:07] 
[2025-07-11 02:20:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-11 02:20:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-11 02:20:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-11 02:20:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-11 02:20:07] 
[2025-07-11 02:20:07] 2025-07-11 02:19:37,088 | INFO     | ***************************************
[2025-07-11 02:20:07] 2025-07-11 02:19:37,590 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31419/slots/0
[2025-07-11 02:20:07] 2025-07-11 02:19:37,597 | INFO     | sufficient remaining disk space (185449054208 B)
[2025-07-11 02:20:07] 2025-07-11 02:19:37,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-11 02:20:07] 2025-07-11 02:19:37,597 | INFO     | current server update state: UPDATING_FINAL
[2025-07-11 02:20:07] 2025-07-11 02:19:37,597 | INFO     | update_server=False
[2025-07-11 02:20:07] 2025-07-11 02:19:37,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-11 02:20:07] 2025-07-11 02:19:37,597 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-11 02:20:07] 2025-07-11 02:19:37,597 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-11 02:20:07] 2025-07-11 02:19:37,645 | INFO     | all job control threads have been joined
[2025-07-11 02:20:07] 2025-07-11 02:19:37,746 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-11 02:20:07] 2025-07-11 02:19:37,786 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-11 02:20:07] 2025-07-11 02:19:37,786 | INFO     | aborting loop
[2025-07-11 02:20:07] 2025-07-11 02:19:37,847 | INFO     | all data control threads have been joined
[2025-07-11 02:20:07] 2025-07-11 02:19:38,038 | INFO     | all payload control threads have been joined
[2025-07-11 02:20:07] 2025-07-11 02:19:38,602 | INFO     | [job] queue monitor thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:38,602 | INFO     | [job] retrieve thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:38,651 | INFO     | [job] control thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:38,771 | INFO     | [payload] validate_post thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:38,791 | INFO     | [job] job monitor thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:38,830 | INFO     | [job] create_data_payload thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:38,850 | INFO     | [data] control thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:38,888 | INFO     | [data] copytool_in thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:39,043 | INFO     | [payload] control thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:39,314 | INFO     | [payload] failed_post thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:39,603 | INFO     | [data] copytool_out thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:39,826 | INFO     | [payload] execute_payloads thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:39,864 | INFO     | [job] validate thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:40,044 | INFO     | [payload] validate_pre thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:41,751 | INFO     | [data] queue_monitor thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:48,568 | INFO     | job.realtimelogging is not enabled
[2025-07-11 02:20:07] 2025-07-11 02:19:49,570 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-11 02:20:07] 2025-07-11 02:19:49,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140533866137408)>', '<ExcThread(monitor, started 140533569660672)>']
[2025-07-11 02:20:07] 2025-07-11 02:19:54,825 | INFO     | all workflow threads have been joined
[2025-07-11 02:20:07] 2025-07-11 02:19:54,825 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-11 02:20:07] 2025-07-11 02:19:54,826 | INFO     | traces error code: 0
[2025-07-11 02:20:07] 2025-07-11 02:19:54,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-11 02:20:07] 2025-07-11 02:20:07,409 | INFO     | PID=117921 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-11 02:20:07] 2025-07-11 02:20:07,409 | INFO     | found 0 job(s) in 20 queues
[2025-07-11 02:20:07] 2025-07-11 02:20:07,409 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-11 02:20:07] 2025-07-11 02:20:07,409 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-11 02:20:07] 2025-07-11 02:20:07,409 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-11 02:20:07] 2025-07-11 02:20:07,409 | INFO     | [monitor] control thread has ended
[2025-07-11 02:20:07] 2025-07-11 02:20:07,447 [wrapper] ==== pilot stdout END ====
[2025-07-11 02:20:07] 2025-07-11 02:20:07,448 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-11 02:20:07] 2025-07-11 02:20:07,449 [wrapper] pilotpid: 117921
[2025-07-11 02:20:07] 2025-07-11 02:20:07,450 [wrapper] Pilot exit status: 0
[2025-07-11 02:20:07] 2025-07-11 02:20:07,454 [wrapper] pandaids: 6720585590
[2025-07-11 02:20:07] 2025-07-11 02:20:07,467 [wrapper] cleanup supervisor_pilot  141871 117922
[2025-07-11 02:20:07] 2025-07-11 02:20:07,469 [wrapper] Test setup, not cleaning
[2025-07-11 02:20:07] 2025-07-11 02:20:07,470 [wrapper] apfmon messages muted
[2025-07-11 02:20:07] 2025-07-11 02:20:07,471 [wrapper] ==== wrapper stdout END ====
[2025-07-11 02:20:07] 2025-07-11 02:20:07,472 [wrapper] ==== wrapper stderr END ====
[2025-07-11 02:20:07]  *** Error codes and diagnostics ***
[2025-07-11 02:20:07]     "exeErrorCode": 0,
[2025-07-11 02:20:07]     "exeErrorDiag": "",
[2025-07-11 02:20:07]     "pilotErrorCode": 0,
[2025-07-11 02:20:07]     "pilotErrorDiag": "",
[2025-07-11 02:20:07]  *** Listing of results directory ***
[2025-07-11 02:20:07] total 577868
[2025-07-11 02:20:07] -rw-r--r-- 1 boinc boinc      5112 Jul  4 22:11 queuedata.json
[2025-07-11 02:20:07] -rw-r--r-- 1 boinc boinc    530466 Jul  4 22:13 pilot3.tar.gz
[2025-07-11 02:20:07] -rwx------ 1 boinc boinc     36292 Jul  4 22:14 runpilot2-wrapper.sh
[2025-07-11 02:20:07] -rw-rw-r-- 1 boinc boinc       100 Jul 11 00:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-11 02:20:07] -rwxr-xr-x 1 boinc boinc      7986 Jul 11 00:54 run_atlas
[2025-07-11 02:20:07] -rw-rw-r-- 1 boinc boinc       105 Jul 11 00:54 job.xml
[2025-07-11 02:20:07] -rw-r--r-- 2 boinc boinc     15095 Jul 11 00:54 start_atlas.sh
[2025-07-11 02:20:07] drwxrwx--x 2 boinc boinc      4096 Jul 11 00:54 shared
[2025-07-11 02:20:07] -rw-r--r-- 2 boinc boinc    542885 Jul 11 00:54 input.tar.gz
[2025-07-11 02:20:07] -rw-rw-r-- 1 boinc boinc      9685 Jul 11 00:54 init_data.xml
[2025-07-11 02:20:07] -rw-r--r-- 2 boinc boinc 320490263 Jul 11 00:54 EVNT.45482060._000079.pool.root.1
[2025-07-11 02:20:07] -rw-rw-r-- 1 boinc boinc         0 Jul 11 00:54 boinc_lockfile
[2025-07-11 02:20:07] -rw-rw-r-- 1 boinc boinc      2531 Jul 11 00:54 pandaJob.out
[2025-07-11 02:20:07] -rw------- 1 boinc boinc    975880 Jul 11 00:54 agis_schedconf.cvmfs.json
[2025-07-11 02:20:07] -rw------- 1 boinc boinc   1583028 Jul 11 00:54 agis_ddmendpoints.agis.ALL.json
[2025-07-11 02:20:07] drwx------ 4 boinc boinc      4096 Jul 11 00:54 pilot3
[2025-07-11 02:20:07] -rw-rw-r-- 1 boinc boinc       530 Jul 11 02:19 boinc_task_state.xml
[2025-07-11 02:20:07] -rw------- 1 boinc boinc 265588454 Jul 11 02:19 HITS.45482062._001968.pool.root.1
[2025-07-11 02:20:07] -rw------- 1 boinc boinc        95 Jul 11 02:19 pilot_heartbeat.json
[2025-07-11 02:20:07] -rw------- 1 boinc boinc      1027 Jul 11 02:19 memory_monitor_summary.json
[2025-07-11 02:20:07] -rw------- 1 boinc boinc    374288 Jul 11 02:19 log.45482062._001968.job.log.tgz.1
[2025-07-11 02:20:07] -rw------- 1 boinc boinc      7726 Jul 11 02:19 heartbeat.json
[2025-07-11 02:20:07] -rw-rw-r-- 1 boinc boinc      8192 Jul 11 02:20 boinc_mmap_file
[2025-07-11 02:20:07] -rw-rw-r-- 1 boinc boinc        27 Jul 11 02:20 wrapper_checkpoint.txt
[2025-07-11 02:20:07] -rw------- 1 boinc boinc       746 Jul 11 02:20 pilotlog.txt
[2025-07-11 02:20:07] -rw------- 1 boinc boinc    520896 Jul 11 02:20 log.45482062._001968.job.log.1
[2025-07-11 02:20:07] -rw------- 1 boinc boinc       357 Jul 11 02:20 output.list
[2025-07-11 02:20:07] -rw-rw-r-- 1 boinc boinc       620 Jul 11 02:20 runtime_log
[2025-07-11 02:20:07] -rw------- 1 boinc boinc    911360 Jul 11 02:20 result.tar.gz
[2025-07-11 02:20:07] -rw------- 1 boinc boinc       648 Jul 11 02:20 xUnLDm5q3r7n9Rq4apOajLDm4fhM0noT9bVof3QYDmQJoKDmAhIrjn.diag
[2025-07-11 02:20:07] -rw-rw-r-- 1 boinc boinc      8954 Jul 11 02:20 runtime_log.err
[2025-07-11 02:20:07] -rw-rw-r-- 1 boinc boinc     21375 Jul 11 02:20 stderr.txt
[2025-07-11 02:20:07] HITS file was successfully produced:
[2025-07-11 02:20:07] -rw------- 1 boinc boinc 265588454 Jul 11 02:19 shared/HITS.pool.root.1
[2025-07-11 02:20:07]  *** Contents of shared directory: ***
[2025-07-11 02:20:07] total 573792
[2025-07-11 02:20:07] -rw-r--r-- 2 boinc boinc     15095 Jul 11 00:54 start_atlas.sh
[2025-07-11 02:20:07] -rw-r--r-- 2 boinc boinc    542885 Jul 11 00:54 input.tar.gz
[2025-07-11 02:20:07] -rw-r--r-- 2 boinc boinc 320490263 Jul 11 00:54 ATLAS.root_0
[2025-07-11 02:20:07] -rw------- 1 boinc boinc 265588454 Jul 11 02:19 HITS.pool.root.1
[2025-07-11 02:20:07] -rw------- 1 boinc boinc    911360 Jul 11 02:20 result.tar.gz
02:20:08 (114194): run_atlas exited; CPU time 36491.724388
02:20:08 (114194): called boinc_finish(0)

</stderr_txt>
]]>

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