Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:33:10 (179834): wrapper (7.7.26015): starting
08:33:10 (179834): wrapper: running run_atlas (--nthreads 4)
[2025-07-05 08:33:10] Arguments: --nthreads 4
[2025-07-05 08:33:10] Threads: 4
[2025-07-05 08:33:10] Checking for CVMFS
[2025-07-05 08:33:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-05 08:33:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-05 08:33:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-05 08:33:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-05 08:33:10] 2.9.2.0 11224 616 72992 147954 0 56 26632417 36864000 0 130560 0 434179 99.986 19057 3778 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-05 08:33:10] CVMFS is ok
[2025-07-05 08:33:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-05 08:33:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-05 08:33:10] Further information can be found at the LHC@home message board.
[2025-07-05 08:33:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-05 08:33:10] Checking for apptainer binary...
[2025-07-05 08:33:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-05 08:33:10] Running /usr/bin/apptainer --version
[2025-07-05 08:33:10] apptainer version 1.4.1-1.1
[2025-07-05 08:33:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-05 08:33:10] thA373a
[2025-07-05 08:33:10] apptainer works
[2025-07-05 08:33:10] Set ATHENA_PROC_NUMBER=4
[2025-07-05 08:33:10] Set ATHENA_CORE_NUMBER=4
[2025-07-05 08:33:10] Starting ATLAS job with PandaID=6720535299
[2025-07-05 08:33:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-05 10:12:39]  *** The last 200 lines of the pilot log: ***
[2025-07-05 10:12:39]  lfn=log.45482040._001119.job.log.tgz.1
[2025-07-05 10:12:39]  mtime=0
[2025-07-05 10:12:39]  protocol_id=None
[2025-07-05 10:12:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-05 10:12:39]  replicas=None
[2025-07-05 10:12:39]  scope=mc23_13p6TeV
[2025-07-05 10:12:39]  status=None
[2025-07-05 10:12:39]  status_code=0
[2025-07-05 10:12:39]  storage_token=
[2025-07-05 10:12:39]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6720535299/log.45482040._001119.job.log.tgz.1
[2025-07-05 10:12:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/67/log.45482040._001119.job.log.tgz.1
[2025-07-05 10:12:39]  workdir=None
[2025-07-05 10:12:39] ]
[2025-07-05 10:12:39] 2025-07-05 08:12:02,026 | INFO     | monitor loop #455: job 0:6720535299 is in state 'stageout'
[2025-07-05 10:12:39] 2025-07-05 08:12:02,026 | WARNING  | aborting job monitor tasks since payload process 190165 is not running
[2025-07-05 10:12:39] 2025-07-05 08:12:02,036 | INFO     | transferring file log.45482040._001119.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6720535299/log.45482040._001119.job.log.tgz.1 to /local/data/boinc/
[2025-07-05 10:12:39] 2025-07-05 08:12:02,036 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6720535299/log.45482040._001119.job.log.tgz.1 /local/data/boinc/slots/0/log.45482040._0011
[2025-07-05 10:12:39] 2025-07-05 08:12:02,054 | INFO     | adding to output.list: log.45482040._001119.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/67/log.45482040._001119.job.log.tg
[2025-07-05 10:12:39] 2025-07-05 08:12:02,055 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-05 10:12:39] 2025-07-05 08:12:02,055 | INFO     | summary of transferred files:
[2025-07-05 10:12:39] 2025-07-05 08:12:02,055 | INFO     |  -- lfn=log.45482040._001119.job.log.tgz.1, status_code=0, status=transferred
[2025-07-05 10:12:39] 2025-07-05 08:12:02,055 | INFO     | stage-out finished correctly
[2025-07-05 10:12:39] 2025-07-05 08:12:02,092 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-05 10:12:39] 2025-07-05 08:12:04,530 | INFO     | monitor loop #456: job 0:6720535299 is in state 'finished'
[2025-07-05 10:12:39] 2025-07-05 08:12:04,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-05 10:12:39] 2025-07-05 08:12:04,541 | INFO     | job 6720535299 has state=finished
[2025-07-05 10:12:39] 2025-07-05 08:12:04,541 | INFO     | preparing for final server update for job 6720535299 in state='finished'
[2025-07-05 10:12:39] 2025-07-05 08:12:04,542 | INFO     | this job has now completed (state=finished)
[2025-07-05 10:12:39] 2025-07-05 08:12:04,542 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-05 10:12:39] 2025-07-05 08:12:04,542 | INFO     | log transfer has been attempted: DONE
[2025-07-05 10:12:39] 2025-07-05 08:12:04,542 | INFO     | job 6720535299 has finished - writing final server update
[2025-07-05 10:12:39] 2025-07-05 08:12:04,542 | INFO     | total number of processed events: 400 (read)
[2025-07-05 10:12:39] 2025-07-05 08:12:04,543 | INFO     | executing command: lscpu
[2025-07-05 10:12:39] 2025-07-05 08:12:04,564 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-05 10:12:39] 2025-07-05 08:12:05,419 | INFO     | PID=183543 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-05 10:12:39] 2025-07-05 08:12:07,033 | INFO     | monitor loop #457: job 0:6720535299 is in state 'finished'
[2025-07-05 10:12:39] 2025-07-05 08:12:07,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-05 10:12:39] 2025-07-05 08:12:07,962 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-05 10:12:39] 2025-07-05 08:12:07,963 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3727.6618125
[2025-07-05 10:12:39] 2025-07-05 08:12:07,965 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6720535299/memory_monitor_summary.json (trf name=prmon)
[2025-07-05 10:12:39] 2025-07-05 08:12:07,965 | INFO     | extracted standard info from prmon json
[2025-07-05 10:12:39] 2025-07-05 08:12:07,965 | INFO     | extracted standard memory fields from prmon json
[2025-07-05 10:12:39] 2025-07-05 08:12:07,965 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-05 10:12:39] 2025-07-05 08:12:07,965 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-05 10:12:39] 2025-07-05 08:12:07,965 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-05 10:12:39] 2025-07-05 08:12:07,966 | INFO     | fitting pss+swap vs Time
[2025-07-05 10:12:39] 2025-07-05 08:12:07,966 | INFO     | sum of square deviations: 226022842.5
[2025-07-05 10:12:39] 2025-07-05 08:12:07,966 | INFO     | sum of deviations: -2824855618.5
[2025-07-05 10:12:39] 2025-07-05 08:12:07,966 | INFO     | mean x: 1751700241.5
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | mean y: 2501847.6333333333
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | -- intersect: 21895422998.419598
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | intersect: 21895422998.419598
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | chi2: 0.028301691131391995
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | -- intersect: 21895422998.419598
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | current memory leak: -12.50 B/s (using 90 data points, chi2=0.03)
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | could have reported an average CPU frequency of 3782 MHz (7 samples)
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | ..............................
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | . Timing measurements:
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | . get job = 0 s
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | . initial setup = 1 s
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | . payload setup = 5 s
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | . stage-in = 0 s
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | . payload execution = 5900 s
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | . stage-out = 0 s
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | . log creation = 0 s
[2025-07-05 10:12:39] 2025-07-05 08:12:07,967 | INFO     | ..............................
[2025-07-05 10:12:39] 2025-07-05 08:12:08,008 | INFO     | 
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | job summary report
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | --------------------------------------------------
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | PanDA job id: 6720535299
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | task id: 45482040
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | errors: (none)
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | pilot state: finished 
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | transexitcode: 0
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | exeerrorcode: 0
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | exeerrordiag: 
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | exitcode: 0
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | exitmsg: OK
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | cpuconsumptiontime: 22582 s
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | nevents: 400
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | neventsw: 0
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | pid: 190165
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | pgrp: 190165
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | corecount: 4
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | event service: False
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | sizes: {0: 2366566, 4: 2366828, 11: 2366856, 5909: 2393741, 5910: 2402801, 5916: 2402939}
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | --------------------------------------------------
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | 
[2025-07-05 10:12:39] 2025-07-05 08:12:08,009 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,028 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-05 10:12:39] 2025-07-05 08:12:08,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,029 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-05 10:12:39] 2025-07-05 08:12:08,029 | INFO     | job 6720535299 has completed (purged errors)
[2025-07-05 10:12:39] 2025-07-05 08:12:08,029 | INFO     | overall cleanup function is called
[2025-07-05 10:12:39] 2025-07-05 08:12:09,036 | INFO     | --- collectZombieJob: --- 10, [190165]
[2025-07-05 10:12:39] 2025-07-05 08:12:09,036 | INFO     | zombie collector waiting for pid 190165
[2025-07-05 10:12:39] 2025-07-05 08:12:09,036 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-05 10:12:39] 2025-07-05 08:12:09,036 | INFO     | collected zombie processes
[2025-07-05 10:12:39] 2025-07-05 08:12:09,036 | INFO     | will attempt to kill all subprocesses of pid=190165
[2025-07-05 10:12:39] 2025-07-05 08:12:09,079 | INFO     | process IDs to be killed: [190165] (in reverse order)
[2025-07-05 10:12:39] 2025-07-05 08:12:09,112 | WARNING  | found no corresponding commands to process id(s)
[2025-07-05 10:12:39] 2025-07-05 08:12:09,112 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-05 10:12:39] 2025-07-05 08:12:09,114 | INFO     | did not find any defunct processes belonging to 190165
[2025-07-05 10:12:39] 2025-07-05 08:12:09,115 | INFO     | did not find any defunct processes belonging to 190165
[2025-07-05 10:12:39] 2025-07-05 08:12:09,115 | INFO     | ready for new job
[2025-07-05 10:12:39] 2025-07-05 08:12:09,115 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-05 10:12:39] 2025-07-05 08:12:09,116 | INFO     | ***************************************
[2025-07-05 10:12:39] 2025-07-05 08:12:09,116 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-05 10:12:39] 2025-07-05 08:12:09,116 | INFO     | ***************************************
[2025-07-05 10:12:39] 2025-07-05 08:12:09,116 | INFO     | 
[2025-07-05 10:12:39] 2025-07-05 08:12:09,116 | INFO     | architecture information:
[2025-07-05 10:12:39] 2025-07-05 08:12:09,117 | INFO     | executing command: cat /etc/os-release
[2025-07-05 10:12:39] 2025-07-05 08:12:09,130 | INFO     | cat /etc/os-release:
[2025-07-05 10:12:39] NAME="CentOS Linux"
[2025-07-05 10:12:39] VERSION="7 (Core)"
[2025-07-05 10:12:39] ID="centos"
[2025-07-05 10:12:39] ID_LIKE="rhel fedora"
[2025-07-05 10:12:39] VERSION_ID="7"
[2025-07-05 10:12:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-05 10:12:39] ANSI_COLOR="0;31"
[2025-07-05 10:12:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-05 10:12:39] HOME_URL="https://www.centos.org/"
[2025-07-05 10:12:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-05 10:12:39] 
[2025-07-05 10:12:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-05 10:12:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-05 10:12:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-05 10:12:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-05 10:12:39] 
[2025-07-05 10:12:39] 2025-07-05 08:12:09,130 | INFO     | ***************************************
[2025-07-05 10:12:39] 2025-07-05 08:12:09,634 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-05 10:12:39] 2025-07-05 08:12:09,651 | INFO     | sufficient remaining disk space (328760033280 B)
[2025-07-05 10:12:39] 2025-07-05 08:12:09,652 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-05 10:12:39] 2025-07-05 08:12:09,652 | INFO     | current server update state: UPDATING_FINAL
[2025-07-05 10:12:39] 2025-07-05 08:12:09,652 | INFO     | update_server=False
[2025-07-05 10:12:39] 2025-07-05 08:12:09,652 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-05 10:12:39] 2025-07-05 08:12:09,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-05 10:12:39] 2025-07-05 08:12:10,033 | INFO     | all data control threads have been joined
[2025-07-05 10:12:39] 2025-07-05 08:12:10,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-05 10:12:39] 2025-07-05 08:12:10,542 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-05 10:12:39] 2025-07-05 08:12:10,542 | INFO     | aborting loop
[2025-07-05 10:12:39] 2025-07-05 08:12:10,614 | INFO     | all payload control threads have been joined
[2025-07-05 10:12:39] 2025-07-05 08:12:10,657 | INFO     | [job] queue monitor thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:10,657 | INFO     | [job] retrieve thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:10,663 | INFO     | [payload] validate_post thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:10,745 | INFO     | [payload] failed_post thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:11,039 | INFO     | [data] control thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:11,118 | INFO     | all job control threads have been joined
[2025-07-05 10:12:39] 2025-07-05 08:12:11,194 | INFO     | [data] copytool_in thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:11,548 | INFO     | [job] job monitor thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:11,619 | INFO     | [payload] control thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:11,633 | INFO     | [payload] execute_payloads thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:12,011 | INFO     | [job] validate thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:12,111 | INFO     | [data] copytool_out thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:12,124 | INFO     | [job] control thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:12,126 | INFO     | [job] create_data_payload thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:12,154 | INFO     | [payload] validate_pre thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:12,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-05 10:12:39] 2025-07-05 08:12:16,646 | INFO     | [data] queue_monitor thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:20,563 | INFO     | job.realtimelogging is not enabled
[2025-07-05 10:12:39] 2025-07-05 08:12:21,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-05 10:12:39] 2025-07-05 08:12:22,145 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139675946837824)>', '<ExcThread(monitor, started 139674953709312)>']
[2025-07-05 10:12:39] 2025-07-05 08:12:27,170 | INFO     | all workflow threads have been joined
[2025-07-05 10:12:39] 2025-07-05 08:12:27,171 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-05 10:12:39] 2025-07-05 08:12:27,171 | INFO     | traces error code: 0
[2025-07-05 10:12:39] 2025-07-05 08:12:27,171 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-05 10:12:39] 2025-07-05 08:12:39,553 | INFO     | PID=183543 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-05 10:12:39] 2025-07-05 08:12:39,553 | INFO     | found 0 job(s) in 20 queues
[2025-07-05 10:12:39] 2025-07-05 08:12:39,553 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-05 10:12:39] 2025-07-05 08:12:39,553 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-05 10:12:39] 2025-07-05 08:12:39,553 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-05 10:12:39] 2025-07-05 08:12:39,553 | INFO     | [monitor] control thread has ended
[2025-07-05 10:12:39] 2025-07-05 08:12:39,630 [wrapper] ==== pilot stdout END ====
[2025-07-05 10:12:39] 2025-07-05 08:12:39,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-05 10:12:39] 2025-07-05 08:12:39,638 [wrapper] pilotpid: 183543
[2025-07-05 10:12:39] 2025-07-05 08:12:39,642 [wrapper] Pilot exit status: 0
[2025-07-05 10:12:39] 2025-07-05 08:12:39,654 [wrapper] pandaids: 6720535299
[2025-07-05 10:12:39] 2025-07-05 08:12:39,676 [wrapper] cleanup supervisor_pilot  202627 183544
[2025-07-05 10:12:39] 2025-07-05 08:12:39,680 [wrapper] Test setup, not cleaning
[2025-07-05 10:12:39] 2025-07-05 08:12:39,683 [wrapper] apfmon messages muted
[2025-07-05 10:12:39] 2025-07-05 08:12:39,687 [wrapper] ==== wrapper stdout END ====
[2025-07-05 10:12:39] 2025-07-05 08:12:39,691 [wrapper] ==== wrapper stderr END ====
[2025-07-05 10:12:39]  *** Error codes and diagnostics ***
[2025-07-05 10:12:39]     "exeErrorCode": 0,
[2025-07-05 10:12:39]     "exeErrorDiag": "",
[2025-07-05 10:12:39]     "pilotErrorCode": 0,
[2025-07-05 10:12:39]     "pilotErrorDiag": "",
[2025-07-05 10:12:39]  *** Listing of results directory ***
[2025-07-05 10:12:39] total 574116
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc      5112 Jul  4 22:23 queuedata.json
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc    530466 Jul  4 22:23 pilot3.tar.gz
[2025-07-05 10:12:39] -rwx------ 1 boinc boinc     36292 Jul  4 22:23 runpilot2-wrapper.sh
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc       100 Jul  5 08:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-05 10:12:39] -rwxr-xr-x 1 boinc boinc      7986 Jul  5 08:33 run_atlas
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc       105 Jul  5 08:33 job.xml
[2025-07-05 10:12:39] -rw-r--r-- 2 boinc boinc 320590212 Jul  5 08:33 EVNT.45482038._000045.pool.root.1
[2025-07-05 10:12:39] -rw-r--r-- 2 boinc boinc    542884 Jul  5 08:33 input.tar.gz
[2025-07-05 10:12:39] -rw-r--r-- 2 boinc boinc     15095 Jul  5 08:33 start_atlas.sh
[2025-07-05 10:12:39] drwxrwx--x 2 boinc boinc      4096 Jul  5 08:33 shared
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc         0 Jul  5 08:33 boinc_setup_complete
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc      6380 Jul  5 08:33 init_data.xml
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc         0 Jul  5 08:33 boinc_lockfile
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc      2543 Jul  5 08:33 pandaJob.out
[2025-07-05 10:12:39] -rw------- 1 boinc boinc    966201 Jul  5 08:33 agis_schedconf.cvmfs.json
[2025-07-05 10:12:39] -rw------- 1 boinc boinc   1574083 Jul  5 08:33 agis_ddmendpoints.agis.ALL.json
[2025-07-05 10:12:39] drwx------ 4 boinc boinc      4096 Jul  5 08:33 pilot3
[2025-07-05 10:12:39] -rw------- 1 boinc boinc 261794261 Jul  5 10:11 HITS.45482040._001119.pool.root.1
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc       529 Jul  5 10:11 boinc_task_state.xml
[2025-07-05 10:12:39] -rw------- 1 boinc boinc        95 Jul  5 10:11 pilot_heartbeat.json
[2025-07-05 10:12:39] -rw------- 1 boinc boinc      1024 Jul  5 10:11 memory_monitor_summary.json
[2025-07-05 10:12:39] -rw------- 1 boinc boinc    263725 Jul  5 10:12 log.45482040._001119.job.log.tgz.1
[2025-07-05 10:12:39] -rw------- 1 boinc boinc      7771 Jul  5 10:12 heartbeat.json
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc      8192 Jul  5 10:12 boinc_mmap_file
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc        27 Jul  5 10:12 wrapper_checkpoint.txt
[2025-07-05 10:12:39] -rw------- 1 boinc boinc       746 Jul  5 10:12 pilotlog.txt
[2025-07-05 10:12:39] -rw------- 1 boinc boinc    567922 Jul  5 10:12 log.45482040._001119.job.log.1
[2025-07-05 10:12:39] -rw------- 1 boinc boinc       357 Jul  5 10:12 output.list
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc       620 Jul  5 10:12 runtime_log
[2025-07-05 10:12:39] -rw------- 1 boinc boinc    849920 Jul  5 10:12 result.tar.gz
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc      8739 Jul  5 10:12 runtime_log.err
[2025-07-05 10:12:39] -rw------- 1 boinc boinc       660 Jul  5 10:12 idCNDmo71r7n9Rq4apOajLDm4fhM0noT9bVof3QYDmVwnKDmQcCYcn.diag
[2025-07-05 10:12:39] -rw-r--r-- 1 boinc boinc     21715 Jul  5 10:12 stderr.txt
[2025-07-05 10:12:39] HITS file was successfully produced:
[2025-07-05 10:12:39] -rw------- 1 boinc boinc 261794261 Jul  5 10:11 shared/HITS.pool.root.1
[2025-07-05 10:12:39]  *** Contents of shared directory: ***
[2025-07-05 10:12:39] total 570128
[2025-07-05 10:12:39] -rw-r--r-- 2 boinc boinc 320590212 Jul  5 08:33 ATLAS.root_0
[2025-07-05 10:12:39] -rw-r--r-- 2 boinc boinc    542884 Jul  5 08:33 input.tar.gz
[2025-07-05 10:12:39] -rw-r--r-- 2 boinc boinc     15095 Jul  5 08:33 start_atlas.sh
[2025-07-05 10:12:39] -rw------- 1 boinc boinc 261794261 Jul  5 10:11 HITS.pool.root.1
[2025-07-05 10:12:39] -rw------- 1 boinc boinc    849920 Jul  5 10:12 result.tar.gz
10:12:41 (179834): run_atlas exited; CPU time 22600.690472
10:12:41 (179834): called boinc_finish(0)

</stderr_txt>
]]>

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