Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:54:36 (40034): wrapper (7.7.26015): starting
23:54:36 (40034): wrapper: running run_atlas (--nthreads 8)
[2025-07-02 23:54:36] Arguments: --nthreads 8
[2025-07-02 23:54:36] Threads: 8
[2025-07-02 23:54:36] Checking for CVMFS
[2025-07-02 23:54:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-02 23:54:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-02 23:54:36] Running cvmfs_config stat atlas.cern.ch
[2025-07-02 23:54:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-02 23:54:36] 2.11.2.0 300311 13748 170228 147870 2 348 17078358 18432000 9937 130560 0 59015339 99.522 81729827 61019 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-02 23:54:36] CVMFS is ok
[2025-07-02 23:54:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-02 23:54:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-02 23:54:36] Further information can be found at the LHC@home message board.
[2025-07-02 23:54:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-02 23:54:36] Checking for apptainer binary...
[2025-07-02 23:54:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-02 23:54:36] Running /usr/bin/apptainer --version
[2025-07-02 23:54:36] apptainer version 1.3.2-1.el7
[2025-07-02 23:54:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-02 23:54:37] c-211-35-2.aglt2.org
[2025-07-02 23:54:37] apptainer works
[2025-07-02 23:54:37] Set ATHENA_PROC_NUMBER=8
[2025-07-02 23:54:37] Set ATHENA_CORE_NUMBER=8
[2025-07-02 23:54:37] Starting ATLAS job with PandaID=6718152452
[2025-07-02 23:54:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:40:10 (40034): BOINC client no longer exists - exiting
05:40:10 (40034): timer handler: client dead, exiting
05:47:57 (273710): wrapper (7.7.26015): starting
05:47:57 (273710): wrapper: running run_atlas (--nthreads 8)
[2025-07-03 05:47:57] Arguments: --nthreads 8
[2025-07-03 05:47:57] Threads: 8
[2025-07-03 05:47:57] This job has been restarted, cleaning up previous attempt
[2025-07-03 05:47:57] Checking for CVMFS
[2025-07-03 05:47:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-03 05:47:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-03 05:47:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-03 05:47:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-03 05:47:58] 2.11.2.0 300311 14102 175824 147878 1 61 17196522 18432001 14429 130560 0 61328935 99.540 81773327 61013 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-03 05:47:58] CVMFS is ok
[2025-07-03 05:47:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-03 05:47:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-03 05:47:58] Further information can be found at the LHC@home message board.
[2025-07-03 05:47:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-03 05:47:58] Checking for apptainer binary...
[2025-07-03 05:47:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-03 05:47:58] Running /usr/bin/apptainer --version
[2025-07-03 05:47:58] apptainer version 1.3.2-1.el7
[2025-07-03 05:47:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-03 05:48:00] c-211-35-2.aglt2.org
[2025-07-03 05:48:00] apptainer works
[2025-07-03 05:48:00] Set ATHENA_PROC_NUMBER=8
[2025-07-03 05:48:00] Set ATHENA_CORE_NUMBER=8
[2025-07-03 05:48:00] Starting ATLAS job with PandaID=6718152452
[2025-07-03 05:48:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-03 14:20:34]  *** The last 200 lines of the pilot log: ***
[2025-07-03 14:20:34] 2025-07-03 18:19:53,842 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-03 14:20:34] 2025-07-03 18:19:53,864 | INFO     | fitting pss+swap vs Time
[2025-07-03 14:20:34] 2025-07-03 18:19:53,873 | INFO     | sum of square deviations: 39227540491.98608
[2025-07-03 14:20:34] 2025-07-03 18:19:53,888 | INFO     | sum of deviations: 142566900657.2033
[2025-07-03 14:20:34] 2025-07-03 18:19:53,888 | INFO     | mean x: 1751551411.5836654
[2025-07-03 14:20:34] 2025-07-03 18:19:53,888 | INFO     | mean y: 2483720.780876494
[2025-07-03 14:20:34] 2025-07-03 18:19:53,888 | INFO     | -- intersect: -6363280050.267869
[2025-07-03 14:20:34] 2025-07-03 18:19:53,889 | INFO     | intersect: -6363280050.267869
[2025-07-03 14:20:34] 2025-07-03 18:19:53,898 | INFO     | chi2: 2.4913260687159084
[2025-07-03 14:20:34] 2025-07-03 18:19:53,899 | INFO     | sum of square deviations: 38067057124.450554
[2025-07-03 14:20:34] 2025-07-03 18:19:53,923 | INFO     | sum of deviations: 174693610675.64798
[2025-07-03 14:20:34] 2025-07-03 18:19:53,923 | INFO     | mean x: 1751551259.084507
[2025-07-03 14:20:34] 2025-07-03 18:19:53,923 | INFO     | mean y: 2487906.0321931588
[2025-07-03 14:20:34] 2025-07-03 18:19:53,924 | INFO     | -- intersect: -8035559603.987045
[2025-07-03 14:20:34] 2025-07-03 18:19:53,924 | INFO     | intersect: -8035559603.987045
[2025-07-03 14:20:34] 2025-07-03 18:19:53,924 | INFO     | chi2: 1.6746374607361272
[2025-07-03 14:20:34] 2025-07-03 18:19:53,925 | INFO     | current chi2=1.6746374607361272 (change=32.7812813519317 %)
[2025-07-03 14:20:34] 2025-07-03 18:19:53,925 | INFO     | sum of square deviations: 36929690469.41449
[2025-07-03 14:20:34] 2025-07-03 18:19:53,943 | INFO     | sum of deviations: 171884607543.78043
[2025-07-03 14:20:34] 2025-07-03 18:19:53,944 | INFO     | mean x: 1751551106.5853658
[2025-07-03 14:20:34] 2025-07-03 18:19:53,944 | INFO     | mean y: 2487529.386178862
[2025-07-03 14:20:34] 2025-07-03 18:19:53,944 | INFO     | -- intersect: -8149887178.374897
[2025-07-03 14:20:34] 2025-07-03 18:19:53,944 | INFO     | intersect: -8149887178.374897
[2025-07-03 14:20:34] 2025-07-03 18:19:53,945 | INFO     | chi2: 1.6745976193515266
[2025-07-03 14:20:34] 2025-07-03 18:19:53,945 | INFO     | current chi2=1.6745976193515266 (change=0.002379105062121642 %)
[2025-07-03 14:20:34] 2025-07-03 18:19:53,945 | INFO     | right removable region: 491
[2025-07-03 14:20:34] 2025-07-03 18:19:53,956 | INFO     | sum of square deviations: 38067031504.450554
[2025-07-03 14:20:34] 2025-07-03 18:19:53,970 | INFO     | sum of deviations: 54354970976.11274
[2025-07-03 14:20:34] 2025-07-03 18:19:53,979 | INFO     | mean x: 1751551564.084507
[2025-07-03 14:20:34] 2025-07-03 18:19:53,979 | INFO     | mean y: 2495269.9496981893
[2025-07-03 14:20:34] 2025-07-03 18:19:53,979 | INFO     | -- intersect: -2498501804.588342
[2025-07-03 14:20:34] 2025-07-03 18:19:53,979 | INFO     | intersect: -2498501804.588342
[2025-07-03 14:20:34] 2025-07-03 18:19:53,980 | INFO     | chi2: 0.9135852234255114
[2025-07-03 14:20:34] 2025-07-03 18:19:53,981 | INFO     | current chi2=0.9135852234255114 (change=63.329359617049406 %)
[2025-07-03 14:20:34] 2025-07-03 18:19:53,981 | INFO     | sum of square deviations: 36929639229.41451
[2025-07-03 14:20:34] 2025-07-03 18:19:54,003 | INFO     | sum of deviations: 28468843149.80485
[2025-07-03 14:20:34] 2025-07-03 18:19:54,004 | INFO     | mean x: 1751551716.5853658
[2025-07-03 14:20:34] 2025-07-03 18:19:54,004 | INFO     | mean y: 2498740.7784552844
[2025-07-03 14:20:34] 2025-07-03 18:19:54,004 | INFO     | -- intersect: -1347762245.4843879
[2025-07-03 14:20:34] 2025-07-03 18:19:54,004 | INFO     | intersect: -1347762245.4843879
[2025-07-03 14:20:34] 2025-07-03 18:19:54,005 | INFO     | chi2: 0.8307945672517086
[2025-07-03 14:20:34] 2025-07-03 18:19:54,005 | INFO     | current chi2=0.8307945672517086 (change=9.062171109048487 %)
[2025-07-03 14:20:34] 2025-07-03 18:19:54,005 | INFO     | left removable region: 20
[2025-07-03 14:20:34] 2025-07-03 18:19:54,006 | INFO     | sum of square deviations: 32399834068.25462
[2025-07-03 14:20:34] 2025-07-03 18:19:54,029 | INFO     | sum of deviations: 53494182421.426796
[2025-07-03 14:20:34] 2025-07-03 18:19:54,029 | INFO     | mean x: 1751551686.089172
[2025-07-03 14:20:34] 2025-07-03 18:19:54,029 | INFO     | mean y: 2503707.966029724
[2025-07-03 14:20:34] 2025-07-03 18:19:54,029 | INFO     | -- intersect: -2889419294.4427094
[2025-07-03 14:20:34] 2025-07-03 18:19:54,029 | INFO     | intersect: -2889419294.4427094
[2025-07-03 14:20:34] 2025-07-03 18:19:54,030 | INFO     | chi2: 0.004057714007457723
[2025-07-03 14:20:34] 2025-07-03 18:19:54,030 | INFO     | -- intersect: -2889419294.4427094
[2025-07-03 14:20:34] 2025-07-03 18:19:54,030 | INFO     | current memory leak: 1.65 B/s (using 471 data points, chi2=0.00)
[2025-07-03 14:20:34] 2025-07-03 18:19:54,031 | INFO     | could have reported an average CPU frequency of 2588 MHz (20 samples)
[2025-07-03 14:20:34] 2025-07-03 18:19:54,037 | INFO     | ..............................
[2025-07-03 14:20:34] 2025-07-03 18:19:54,037 | INFO     | . Timing measurements:
[2025-07-03 14:20:34] 2025-07-03 18:19:54,037 | INFO     | . get job = 0 s
[2025-07-03 14:20:34] 2025-07-03 18:19:54,037 | INFO     | . initial setup = 2 s
[2025-07-03 14:20:34] 2025-07-03 18:19:54,037 | INFO     | . payload setup = 10 s
[2025-07-03 14:20:34] 2025-07-03 18:19:54,038 | INFO     | . stage-in = 0 s
[2025-07-03 14:20:34] 2025-07-03 18:19:54,038 | INFO     | . payload execution = 30617 s
[2025-07-03 14:20:34] 2025-07-03 18:19:54,038 | INFO     | . stage-out = 4 s
[2025-07-03 14:20:34] 2025-07-03 18:19:54,038 | INFO     | . log creation = 1 s
[2025-07-03 14:20:34] 2025-07-03 18:19:54,038 | INFO     | ..............................
[2025-07-03 14:20:34] 2025-07-03 18:19:54,494 | INFO     | 
[2025-07-03 14:20:34] 2025-07-03 18:19:54,494 | INFO     | job summary report
[2025-07-03 14:20:34] 2025-07-03 18:19:54,494 | INFO     | --------------------------------------------------
[2025-07-03 14:20:34] 2025-07-03 18:19:54,494 | INFO     | PanDA job id: 6718152452
[2025-07-03 14:20:34] 2025-07-03 18:19:54,494 | INFO     | task id: 45436103
[2025-07-03 14:20:34] 2025-07-03 18:19:54,494 | INFO     | errors: (none)
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | pilot state: finished 
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | transexitcode: 0
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | exeerrorcode: 0
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | exeerrordiag: 
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | exitcode: 0
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | exitmsg: OK
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | cpuconsumptiontime: 121763 s
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | nevents: 400
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | neventsw: 0
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | pid: 7036
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | pgrp: 7036
[2025-07-03 14:20:34] 2025-07-03 18:19:54,495 | INFO     | corecount: 8
[2025-07-03 14:20:34] 2025-07-03 18:19:54,496 | INFO     | event service: False
[2025-07-03 14:20:34] 2025-07-03 18:19:54,496 | INFO     | sizes: {0: 2366510, 1: 2366709, 6: 2366971, 11: 2366999, 30631: 2405729, 30636: 2414724, 30637: 2414908, 30683: 2415102}
[2025-07-03 14:20:34] 2025-07-03 18:19:54,496 | INFO     | --------------------------------------------------
[2025-07-03 14:20:34] 2025-07-03 18:19:54,496 | INFO     | 
[2025-07-03 14:20:34] 2025-07-03 18:19:54,496 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-03 14:20:34] 2025-07-03 18:19:54,787 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,787 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,787 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,787 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,787 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,788 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,789 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-03 14:20:34] 2025-07-03 18:19:54,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,789 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-03 14:20:34] 2025-07-03 18:19:54,789 | INFO     | job 6718152452 has completed (purged errors)
[2025-07-03 14:20:34] 2025-07-03 18:19:54,789 | INFO     | overall cleanup function is called
[2025-07-03 14:20:34] 2025-07-03 18:19:55,802 | INFO     | --- collectZombieJob: --- 10, [7036]
[2025-07-03 14:20:34] 2025-07-03 18:19:55,802 | INFO     | zombie collector waiting for pid 7036
[2025-07-03 14:20:34] 2025-07-03 18:19:55,802 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-03 14:20:34] 2025-07-03 18:19:55,802 | INFO     | collected zombie processes
[2025-07-03 14:20:34] 2025-07-03 18:19:55,802 | INFO     | will attempt to kill all subprocesses of pid=7036
[2025-07-03 14:20:34] 2025-07-03 18:19:56,645 | INFO     | PID=295558 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-03 14:20:34] 2025-07-03 18:19:56,646 | INFO     | .. there are 18 such processes running
[2025-07-03 14:20:34] 2025-07-03 18:19:57,055 | INFO     | process IDs to be killed: [7036] (in reverse order)
[2025-07-03 14:20:34] 2025-07-03 18:19:57,709 | WARNING  | found no corresponding commands to process id(s)
[2025-07-03 14:20:34] 2025-07-03 18:19:57,710 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-03 14:20:34] 2025-07-03 18:19:57,723 | INFO     | did not find any defunct processes belonging to 7036
[2025-07-03 14:20:34] 2025-07-03 18:19:57,737 | INFO     | did not find any defunct processes belonging to 7036
[2025-07-03 14:20:34] 2025-07-03 18:19:57,738 | INFO     | ready for new job
[2025-07-03 14:20:34] 2025-07-03 18:19:57,738 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-03 14:20:34] 2025-07-03 18:19:57,742 | INFO     | ***************************************
[2025-07-03 14:20:34] 2025-07-03 18:19:57,742 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-03 14:20:34] 2025-07-03 18:19:57,742 | INFO     | ***************************************
[2025-07-03 14:20:34] 2025-07-03 18:19:57,742 | INFO     | 
[2025-07-03 14:20:34] 2025-07-03 18:19:57,748 | INFO     | architecture information:
[2025-07-03 14:20:34] 2025-07-03 18:19:57,749 | INFO     | executing command: cat /etc/os-release
[2025-07-03 14:20:34] 2025-07-03 18:19:57,796 | INFO     | cat /etc/os-release:
[2025-07-03 14:20:34] NAME="CentOS Linux"
[2025-07-03 14:20:34] VERSION="7 (Core)"
[2025-07-03 14:20:34] ID="centos"
[2025-07-03 14:20:34] ID_LIKE="rhel fedora"
[2025-07-03 14:20:34] VERSION_ID="7"
[2025-07-03 14:20:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-03 14:20:34] ANSI_COLOR="0;31"
[2025-07-03 14:20:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-03 14:20:34] HOME_URL="https://www.centos.org/"
[2025-07-03 14:20:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-03 14:20:34] 
[2025-07-03 14:20:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-03 14:20:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-03 14:20:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-03 14:20:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-03 14:20:34] 
[2025-07-03 14:20:34] 2025-07-03 18:19:57,797 | INFO     | ***************************************
[2025-07-03 14:20:34] 2025-07-03 18:19:58,300 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-03 14:20:34] 2025-07-03 18:19:58,499 | INFO     | sufficient remaining disk space (102628327424 B)
[2025-07-03 14:20:34] 2025-07-03 18:19:58,500 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-03 14:20:34] 2025-07-03 18:19:58,504 | INFO     | current server update state: UPDATING_FINAL
[2025-07-03 14:20:34] 2025-07-03 18:19:58,504 | INFO     | update_server=False
[2025-07-03 14:20:34] 2025-07-03 18:19:58,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-03 14:20:34] 2025-07-03 18:19:58,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-03 14:20:34] 2025-07-03 18:19:58,832 | INFO     | all data control threads have been joined
[2025-07-03 14:20:34] 2025-07-03 18:19:58,962 | INFO     | all payload control threads have been joined
[2025-07-03 14:20:34] 2025-07-03 18:19:59,044 | INFO     | all job control threads have been joined
[2025-07-03 14:20:34] 2025-07-03 18:19:59,370 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-03 14:20:34] 2025-07-03 18:19:59,430 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-03 14:20:34] 2025-07-03 18:19:59,430 | INFO     | aborting loop
[2025-07-03 14:20:34] 2025-07-03 18:19:59,510 | INFO     | [job] retrieve thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:19:59,766 | INFO     | [payload] execute_payloads thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:19:59,838 | INFO     | [data] control thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:19:59,898 | INFO     | [payload] failed_post thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:19:59,953 | INFO     | [job] validate thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:19:59,968 | INFO     | [payload] control thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:19:59,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-03 14:20:34] 2025-07-03 18:20:00,050 | INFO     | [job] control thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:20:00,376 | INFO     | [job] queue monitor thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:20:00,439 | INFO     | [job] job monitor thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:20:00,525 | INFO     | [data] copytool_out thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:20:00,549 | INFO     | [payload] validate_post thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:20:00,950 | INFO     | [data] copytool_in thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:20:00,951 | INFO     | [payload] validate_pre thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:20:00,951 | INFO     | [job] create_data_payload thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:20:04,000 | INFO     | [data] queue_monitor thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:20:09,441 | INFO     | job.realtimelogging is not enabled
[2025-07-03 14:20:34] 2025-07-03 18:20:10,447 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-03 14:20:34] 2025-07-03 18:20:12,375 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140541804918592)>', '<ExcThread(monitor, started 140541354288896)>']
[2025-07-03 14:20:34] 2025-07-03 18:20:17,401 | INFO     | all workflow threads have been joined
[2025-07-03 14:20:34] 2025-07-03 18:20:17,401 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-03 14:20:34] 2025-07-03 18:20:17,401 | INFO     | traces error code: 0
[2025-07-03 14:20:34] 2025-07-03 18:20:17,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-03 14:20:34] 2025-07-03 18:20:31,124 | INFO     | PID=295558 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-03 14:20:34] 2025-07-03 18:20:31,140 | INFO     | .. there are 18 such processes running
[2025-07-03 14:20:34] 2025-07-03 18:20:31,141 | INFO     | found 0 job(s) in 20 queues
[2025-07-03 14:20:34] 2025-07-03 18:20:31,141 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-03 14:20:34] 2025-07-03 18:20:31,141 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-03 14:20:34] 2025-07-03 18:20:31,141 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-03 14:20:34] 2025-07-03 18:20:31,141 | INFO     | [monitor] control thread has ended
[2025-07-03 14:20:34] 2025-07-03 18:20:31,604 [wrapper] ==== pilot stdout END ====
[2025-07-03 14:20:34] 2025-07-03 18:20:31,649 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-03 14:20:34] 2025-07-03 18:20:31,694 [wrapper] pilotpid: 295558
[2025-07-03 14:20:34] 2025-07-03 18:20:31,738 [wrapper] Pilot exit status: 0
[2025-07-03 14:20:34] 2025-07-03 18:20:31,892 [wrapper] pandaids: 6718152452 6718152452
[2025-07-03 14:20:34] 2025-07-03 18:20:32,448 [wrapper] cleanup supervisor_pilot 224342 295559
[2025-07-03 14:20:34] 2025-07-03 18:20:32,494 [wrapper] Test setup, not cleaning
[2025-07-03 14:20:34] 2025-07-03 18:20:32,532 [wrapper] apfmon messages muted
[2025-07-03 14:20:34] 2025-07-03 18:20:32,581 [wrapper] ==== wrapper stdout END ====
[2025-07-03 14:20:34] 2025-07-03 18:20:32,623 [wrapper] ==== wrapper stderr END ====
[2025-07-03 14:20:34]  *** Error codes and diagnostics ***
[2025-07-03 14:20:34]     "exeErrorCode": 0,
[2025-07-03 14:20:34]     "exeErrorDiag": "",
[2025-07-03 14:20:34]     "pilotErrorCode": 0,
[2025-07-03 14:20:34]     "pilotErrorDiag": "",
[2025-07-03 14:20:34]  *** Listing of results directory ***
[2025-07-03 14:20:34] total 746112
[2025-07-03 14:20:34] drwx------ 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas    530466 Jul  2 23:39 pilot3.tar.gz
[2025-07-03 14:20:34] -rwx------ 1 boincer umatlas     36292 Jul  2 23:52 runpilot2-wrapper.sh
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas      5112 Jul  2 23:52 queuedata.json
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas       100 Jul  2 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-03 14:20:34] -rwxr-xr-x 1 boincer umatlas      7986 Jul  2 23:54 run_atlas
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas       105 Jul  2 23:54 job.xml
[2025-07-03 14:20:34] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 EVNT.45436099._000005.pool.root.1
[2025-07-03 14:20:34] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 ATLAS.root_0
[2025-07-03 14:20:34] -rw-r--r-- 2 boincer umatlas     15095 Jul  2 23:54 start_atlas.sh
[2025-07-03 14:20:34] drwxrwx--x 2 boincer umatlas      4096 Jul  2 23:54 shared
[2025-07-03 14:20:34] -rw-r--r-- 2 boincer umatlas    542901 Jul  2 23:54 input.tar.gz
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas         0 Jul  2 23:54 boinc_lockfile
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas      2627 Jul  3 05:48 pandaJob.out
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas    969766 Jul  3 05:48 agis_schedconf.cvmfs.json
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas      6386 Jul  3 14:09 init_data.xml
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas 209016906 Jul  3 14:17 HITS.45436103._000114.pool.root.1
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas       533 Jul  3 14:17 boinc_task_state.xml
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas      1064 Jul  3 14:18 memory_monitor_summary.json
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas   1574083 Jul  3 14:19 agis_ddmendpoints.agis.ALL.json
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas    547080 Jul  3 14:19 log.45436103._000114.job.log.tgz.1
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas        96 Jul  3 14:19 pilot_heartbeat.json
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas      7863 Jul  3 14:19 heartbeat.json
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas       822 Jul  3 14:20 pilotlog.txt
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas      8192 Jul  3 14:20 boinc_mmap_file
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas   2649173 Jul  3 14:20 log.45436103._000114.job.log.1
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas        29 Jul  3 14:20 wrapper_checkpoint.txt
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas       357 Jul  3 14:20 output.list
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas       620 Jul  3 14:20 runtime_log
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas   3215360 Jul  3 14:20 result.tar.gz
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas      8756 Jul  3 14:20 runtime_log.err
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas       791 Jul  3 14:20 8U5NDmBBQr7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmR46KDmg6qL3n.diag
[2025-07-03 14:20:34] -rw-r--r-- 1 boincer umatlas     23357 Jul  3 14:20 stderr.txt
[2025-07-03 14:20:34] HITS file was successfully produced:
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas 209016906 Jul  3 14:17 shared/HITS.pool.root.1
[2025-07-03 14:20:34]  *** Contents of shared directory: ***
[2025-07-03 14:20:34] total 473812
[2025-07-03 14:20:34] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 ATLAS.root_0
[2025-07-03 14:20:34] -rw-r--r-- 2 boincer umatlas     15095 Jul  2 23:54 start_atlas.sh
[2025-07-03 14:20:34] -rw-r--r-- 2 boincer umatlas    542901 Jul  2 23:54 input.tar.gz
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas 209016906 Jul  3 14:17 HITS.pool.root.1
[2025-07-03 14:20:34] -rw------- 1 boincer umatlas   3215360 Jul  3 14:20 result.tar.gz
14:20:36 (273710): run_atlas exited; CPU time 122932.978378
14:20:36 (273710): called boinc_finish(0)

</stderr_txt>
]]>

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