Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:54:33 (36118): wrapper (7.7.26015): starting
23:54:33 (36118): wrapper: running run_atlas (--nthreads 8)
[2025-07-02 23:54:33] Arguments: --nthreads 8
[2025-07-02 23:54:33] Threads: 8
[2025-07-02 23:54:33] Checking for CVMFS
[2025-07-02 23:54:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-02 23:54:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-02 23:54:33] Running cvmfs_config stat atlas.cern.ch
[2025-07-02 23:54:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-02 23:54:33] 2.11.2.0 300311 13748 170212 147870 2 348 17078358 18432000 9939 130560 0 59000329 99.522 81729827 61019 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-02 23:54:33] CVMFS is ok
[2025-07-02 23:54:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-02 23:54:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-02 23:54:33] Further information can be found at the LHC@home message board.
[2025-07-02 23:54:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-02 23:54:33] Checking for apptainer binary...
[2025-07-02 23:54:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-02 23:54:33] Running /usr/bin/apptainer --version
[2025-07-02 23:54:33] apptainer version 1.3.2-1.el7
[2025-07-02 23:54:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-02 23:54:34] c-211-35-2.aglt2.org
[2025-07-02 23:54:34] apptainer works
[2025-07-02 23:54:34] Set ATHENA_PROC_NUMBER=8
[2025-07-02 23:54:34] Set ATHENA_CORE_NUMBER=8
[2025-07-02 23:54:34] Starting ATLAS job with PandaID=6718152454
[2025-07-02 23:54:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:40:05 (36118): BOINC client no longer exists - exiting
05:40:05 (36118): timer handler: client dead, exiting
05:47:57 (273709): wrapper (7.7.26015): starting
05:47:57 (273709): wrapper: running run_atlas (--nthreads 8)
[2025-07-03 05:47:57] Arguments: --nthreads 8
[2025-07-03 05:47:57] Threads: 8
[2025-07-03 05:47:57] This job has been restarted, cleaning up previous attempt
[2025-07-03 05:47:57] Checking for CVMFS
[2025-07-03 05:47:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-03 05:47:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-03 05:47:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-03 05:47:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-03 05:47:58] 2.11.2.0 300311 14102 175824 147878 1 61 17196522 18432001 14429 130560 0 61328935 99.540 81773327 61013 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-03 05:47:58] CVMFS is ok
[2025-07-03 05:47:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-03 05:47:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-03 05:47:58] Further information can be found at the LHC@home message board.
[2025-07-03 05:47:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-03 05:47:58] Checking for apptainer binary...
[2025-07-03 05:47:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-03 05:47:58] Running /usr/bin/apptainer --version
[2025-07-03 05:47:58] apptainer version 1.3.2-1.el7
[2025-07-03 05:47:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-03 05:48:00] c-211-35-2.aglt2.org
[2025-07-03 05:48:00] apptainer works
[2025-07-03 05:48:00] Set ATHENA_PROC_NUMBER=8
[2025-07-03 05:48:00] Set ATHENA_CORE_NUMBER=8
[2025-07-03 05:48:00] Starting ATLAS job with PandaID=6718152454
[2025-07-03 05:48:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-03 14:32:46]  *** The last 200 lines of the pilot log: ***
[2025-07-03 14:32:46] 2025-07-03 18:32:11,715 | INFO     | sum of deviations: 131708328235.32993
[2025-07-03 14:32:46] 2025-07-03 18:32:11,716 | INFO     | mean x: 1751551809.0970874
[2025-07-03 14:32:46] 2025-07-03 18:32:11,716 | INFO     | mean y: 2474943.353398058
[2025-07-03 14:32:46] 2025-07-03 18:32:11,716 | INFO     | -- intersect: -5444235816.620061
[2025-07-03 14:32:46] 2025-07-03 18:32:11,716 | INFO     | intersect: -5444235816.620061
[2025-07-03 14:32:46] 2025-07-03 18:32:11,717 | INFO     | chi2: 2.4814650019728903
[2025-07-03 14:32:46] 2025-07-03 18:32:11,717 | INFO     | sum of square deviations: 41133056670.59823
[2025-07-03 14:32:46] 2025-07-03 18:32:11,723 | INFO     | sum of deviations: 164498876863.8725
[2025-07-03 14:32:46] 2025-07-03 18:32:11,723 | INFO     | mean x: 1751551656.5980392
[2025-07-03 14:32:46] 2025-07-03 18:32:11,723 | INFO     | mean y: 2479002.2725490197
[2025-07-03 14:32:46] 2025-07-03 18:32:11,724 | INFO     | -- intersect: -7002307502.820467
[2025-07-03 14:32:46] 2025-07-03 18:32:11,724 | INFO     | intersect: -7002307502.820467
[2025-07-03 14:32:46] 2025-07-03 18:32:11,724 | INFO     | chi2: 1.6774989470150388
[2025-07-03 14:32:46] 2025-07-03 18:32:11,724 | INFO     | current chi2=1.6774989470150388 (change=32.39884722608048 %)
[2025-07-03 14:32:46] 2025-07-03 18:32:11,725 | INFO     | sum of square deviations: 39935105273.04965
[2025-07-03 14:32:46] 2025-07-03 18:32:11,731 | INFO     | sum of deviations: 162328168133.6831
[2025-07-03 14:32:46] 2025-07-03 18:32:11,731 | INFO     | mean x: 1751551504.09901
[2025-07-03 14:32:46] 2025-07-03 18:32:11,731 | INFO     | mean y: 2478725.9663366335
[2025-07-03 14:32:46] 2025-07-03 18:32:11,731 | INFO     | -- intersect: -7117225732.257995
[2025-07-03 14:32:46] 2025-07-03 18:32:11,731 | INFO     | intersect: -7117225732.257995
[2025-07-03 14:32:46] 2025-07-03 18:32:11,732 | INFO     | chi2: 1.67739812992526
[2025-07-03 14:32:46] 2025-07-03 18:32:11,732 | INFO     | current chi2=1.67739812992526 (change=0.006009964415066274 %)
[2025-07-03 14:32:46] 2025-07-03 18:32:11,732 | INFO     | right removable region: 504
[2025-07-03 14:32:46] 2025-07-03 18:32:11,733 | INFO     | sum of square deviations: 41133026170.598236
[2025-07-03 14:32:46] 2025-07-03 18:32:11,738 | INFO     | sum of deviations: 40180535991.67642
[2025-07-03 14:32:46] 2025-07-03 18:32:11,739 | INFO     | mean x: 1751551961.5980392
[2025-07-03 14:32:46] 2025-07-03 18:32:11,739 | INFO     | mean y: 2486329.6764705884
[2025-07-03 14:32:46] 2025-07-03 18:32:11,739 | INFO     | -- intersect: -1708506105.9977043
[2025-07-03 14:32:46] 2025-07-03 18:32:11,739 | INFO     | intersect: -1708506105.9977043
[2025-07-03 14:32:46] 2025-07-03 18:32:11,740 | INFO     | chi2: 0.8968962503833008
[2025-07-03 14:32:46] 2025-07-03 18:32:11,740 | INFO     | current chi2=0.8968962503833008 (change=63.856179729707144 %)
[2025-07-03 14:32:46] 2025-07-03 18:32:11,741 | INFO     | sum of square deviations: 39935044273.049644
[2025-07-03 14:32:46] 2025-07-03 18:32:11,746 | INFO     | sum of deviations: 14295197615.514862
[2025-07-03 14:32:46] 2025-07-03 18:32:11,747 | INFO     | mean x: 1751552114.09901
[2025-07-03 14:32:46] 2025-07-03 18:32:11,747 | INFO     | mean y: 2489624.82970297
[2025-07-03 14:32:46] 2025-07-03 18:32:11,747 | INFO     | -- intersect: -624498126.4225405
[2025-07-03 14:32:46] 2025-07-03 18:32:11,747 | INFO     | intersect: -624498126.4225405
[2025-07-03 14:32:46] 2025-07-03 18:32:11,747 | INFO     | chi2: 0.8150692923435181
[2025-07-03 14:32:46] 2025-07-03 18:32:11,748 | INFO     | current chi2=0.8150692923435181 (change=9.123347098932884 %)
[2025-07-03 14:32:46] 2025-07-03 18:32:11,748 | INFO     | monitor loop #2120: job 0:6718152454 is in state 'finished'
[2025-07-03 14:32:46] 2025-07-03 18:32:11,748 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-03 14:32:46] 2025-07-03 18:32:11,748 | INFO     | left removable region: 20
[2025-07-03 14:32:46] 2025-07-03 18:32:11,749 | INFO     | sum of square deviations: 35157376347.83507
[2025-07-03 14:32:46] 2025-07-03 18:32:11,754 | INFO     | sum of deviations: 42182329654.71896
[2025-07-03 14:32:46] 2025-07-03 18:32:11,755 | INFO     | mean x: 1751552083.6033058
[2025-07-03 14:32:46] 2025-07-03 18:32:11,755 | INFO     | mean y: 2494327.9256198346
[2025-07-03 14:32:46] 2025-07-03 18:32:11,755 | INFO     | -- intersect: -2099043246.066707
[2025-07-03 14:32:46] 2025-07-03 18:32:11,755 | INFO     | intersect: -2099043246.066707
[2025-07-03 14:32:46] 2025-07-03 18:32:11,756 | INFO     | chi2: 0.0010251431853418303
[2025-07-03 14:32:46] 2025-07-03 18:32:11,756 | INFO     | -- intersect: -2099043246.066707
[2025-07-03 14:32:46] 2025-07-03 18:32:11,756 | INFO     | current memory leak: 1.20 B/s (using 484 data points, chi2=0.00)
[2025-07-03 14:32:46] 2025-07-03 18:32:11,757 | INFO     | could have reported an average CPU frequency of 2581 MHz (21 samples)
[2025-07-03 14:32:46] 2025-07-03 18:32:11,757 | INFO     | ..............................
[2025-07-03 14:32:46] 2025-07-03 18:32:11,757 | INFO     | . Timing measurements:
[2025-07-03 14:32:46] 2025-07-03 18:32:11,757 | INFO     | . get job = 0 s
[2025-07-03 14:32:46] 2025-07-03 18:32:11,757 | INFO     | . initial setup = 2 s
[2025-07-03 14:32:46] 2025-07-03 18:32:11,757 | INFO     | . payload setup = 10 s
[2025-07-03 14:32:46] 2025-07-03 18:32:11,757 | INFO     | . stage-in = 0 s
[2025-07-03 14:32:46] 2025-07-03 18:32:11,757 | INFO     | . payload execution = 31393 s
[2025-07-03 14:32:46] 2025-07-03 18:32:11,758 | INFO     | . stage-out = 2 s
[2025-07-03 14:32:46] 2025-07-03 18:32:11,758 | INFO     | . log creation = 0 s
[2025-07-03 14:32:46] 2025-07-03 18:32:11,758 | INFO     | ..............................
[2025-07-03 14:32:46] 2025-07-03 18:32:12,031 | INFO     | 
[2025-07-03 14:32:46] 2025-07-03 18:32:12,031 | INFO     | job summary report
[2025-07-03 14:32:46] 2025-07-03 18:32:12,031 | INFO     | --------------------------------------------------
[2025-07-03 14:32:46] 2025-07-03 18:32:12,031 | INFO     | PanDA job id: 6718152454
[2025-07-03 14:32:46] 2025-07-03 18:32:12,031 | INFO     | task id: 45436103
[2025-07-03 14:32:46] 2025-07-03 18:32:12,031 | INFO     | errors: (none)
[2025-07-03 14:32:46] 2025-07-03 18:32:12,031 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-03 14:32:46] 2025-07-03 18:32:12,031 | INFO     | pilot state: finished 
[2025-07-03 14:32:46] 2025-07-03 18:32:12,031 | INFO     | transexitcode: 0
[2025-07-03 14:32:46] 2025-07-03 18:32:12,031 | INFO     | exeerrorcode: 0
[2025-07-03 14:32:46] 2025-07-03 18:32:12,031 | INFO     | exeerrordiag: 
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | exitcode: 0
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | exitmsg: OK
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | cpuconsumptiontime: 127317 s
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | nevents: 400
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | neventsw: 0
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | pid: 7040
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | pgrp: 7040
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | corecount: 8
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | event service: False
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | sizes: {0: 2366510, 1: 2366709, 6: 2366971, 11: 2366999, 31407: 2406062, 31408: 2406061, 31411: 2415296, 31420: 2415434}
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | --------------------------------------------------
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | 
[2025-07-03 14:32:46] 2025-07-03 18:32:12,032 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-03 14:32:46] 2025-07-03 18:32:12,062 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,062 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,063 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-03 14:32:46] 2025-07-03 18:32:12,064 | INFO     | job 6718152454 has completed (purged errors)
[2025-07-03 14:32:46] 2025-07-03 18:32:12,064 | INFO     | overall cleanup function is called
[2025-07-03 14:32:46] 2025-07-03 18:32:13,072 | INFO     | --- collectZombieJob: --- 10, [7040]
[2025-07-03 14:32:46] 2025-07-03 18:32:13,072 | INFO     | zombie collector waiting for pid 7040
[2025-07-03 14:32:46] 2025-07-03 18:32:13,072 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-03 14:32:46] 2025-07-03 18:32:13,072 | INFO     | collected zombie processes
[2025-07-03 14:32:46] 2025-07-03 18:32:13,072 | INFO     | will attempt to kill all subprocesses of pid=7040
[2025-07-03 14:32:46] 2025-07-03 18:32:13,470 | INFO     | process IDs to be killed: [7040] (in reverse order)
[2025-07-03 14:32:46] 2025-07-03 18:32:13,607 | WARNING  | found no corresponding commands to process id(s)
[2025-07-03 14:32:46] 2025-07-03 18:32:13,608 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-03 14:32:46] 2025-07-03 18:32:13,621 | INFO     | did not find any defunct processes belonging to 7040
[2025-07-03 14:32:46] 2025-07-03 18:32:13,634 | INFO     | did not find any defunct processes belonging to 7040
[2025-07-03 14:32:46] 2025-07-03 18:32:13,635 | INFO     | ready for new job
[2025-07-03 14:32:46] 2025-07-03 18:32:13,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-03 14:32:46] 2025-07-03 18:32:13,639 | INFO     | ***************************************
[2025-07-03 14:32:46] 2025-07-03 18:32:13,639 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-03 14:32:46] 2025-07-03 18:32:13,639 | INFO     | ***************************************
[2025-07-03 14:32:46] 2025-07-03 18:32:13,639 | INFO     | 
[2025-07-03 14:32:46] 2025-07-03 18:32:13,645 | INFO     | architecture information:
[2025-07-03 14:32:46] 2025-07-03 18:32:13,645 | INFO     | executing command: cat /etc/os-release
[2025-07-03 14:32:46] 2025-07-03 18:32:13,671 | INFO     | cat /etc/os-release:
[2025-07-03 14:32:46] NAME="CentOS Linux"
[2025-07-03 14:32:46] VERSION="7 (Core)"
[2025-07-03 14:32:46] ID="centos"
[2025-07-03 14:32:46] ID_LIKE="rhel fedora"
[2025-07-03 14:32:46] VERSION_ID="7"
[2025-07-03 14:32:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-03 14:32:46] ANSI_COLOR="0;31"
[2025-07-03 14:32:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-03 14:32:46] HOME_URL="https://www.centos.org/"
[2025-07-03 14:32:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-03 14:32:46] 
[2025-07-03 14:32:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-03 14:32:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-03 14:32:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-03 14:32:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-03 14:32:46] 
[2025-07-03 14:32:46] 2025-07-03 18:32:13,672 | INFO     | ***************************************
[2025-07-03 14:32:46] 2025-07-03 18:32:14,174 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-03 14:32:46] 2025-07-03 18:32:14,206 | INFO     | sufficient remaining disk space (104913174528 B)
[2025-07-03 14:32:46] 2025-07-03 18:32:14,206 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-03 14:32:46] 2025-07-03 18:32:14,206 | INFO     | current server update state: UPDATING_FINAL
[2025-07-03 14:32:46] 2025-07-03 18:32:14,206 | INFO     | update_server=False
[2025-07-03 14:32:46] 2025-07-03 18:32:14,206 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-03 14:32:46] 2025-07-03 18:32:14,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-03 14:32:46] 2025-07-03 18:32:14,207 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-03 14:32:46] 2025-07-03 18:32:14,251 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-03 14:32:46] 2025-07-03 18:32:14,251 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-03 14:32:46] 2025-07-03 18:32:14,252 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-03 14:32:46] 2025-07-03 18:32:14,252 | INFO     | will abort loop
[2025-07-03 14:32:46] 2025-07-03 18:32:14,682 | INFO     | all job control threads have been joined
[2025-07-03 14:32:46] 2025-07-03 18:32:14,860 | INFO     | all data control threads have been joined
[2025-07-03 14:32:46] 2025-07-03 18:32:14,995 | INFO     | all payload control threads have been joined
[2025-07-03 14:32:46] 2025-07-03 18:32:15,211 | INFO     | [job] retrieve thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:15,257 | INFO     | [job] job monitor thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:15,302 | INFO     | [data] copytool_in thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:15,541 | INFO     | [job] create_data_payload thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:15,682 | INFO     | [job] control thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:15,865 | INFO     | [data] control thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:16,001 | INFO     | [payload] control thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:16,163 | INFO     | [payload] validate_pre thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:16,212 | INFO     | [data] copytool_out thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:16,259 | INFO     | [payload] validate_post thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:16,662 | INFO     | [payload] execute_payloads thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:16,668 | INFO     | [job] validate thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:16,804 | INFO     | [payload] failed_post thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:16,863 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-03 14:32:46] 2025-07-03 18:32:17,868 | INFO     | [job] queue monitor thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:18,212 | INFO     | [data] queue_monitor thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:24,822 | INFO     | job.realtimelogging is not enabled
[2025-07-03 14:32:46] 2025-07-03 18:32:25,827 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-03 14:32:46] 2025-07-03 18:32:26,651 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139671539545920)>', '<ExcThread(monitor, started 139671103325952)>']
[2025-07-03 14:32:46] 2025-07-03 18:32:31,676 | INFO     | all workflow threads have been joined
[2025-07-03 14:32:46] 2025-07-03 18:32:31,676 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-03 14:32:46] 2025-07-03 18:32:31,677 | INFO     | traces error code: 0
[2025-07-03 14:32:46] 2025-07-03 18:32:31,677 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-03 14:32:46] 2025-07-03 18:32:45,072 | INFO     | PID=295505 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-03 14:32:46] 2025-07-03 18:32:45,073 | INFO     | .. there are 15 such processes running
[2025-07-03 14:32:46] 2025-07-03 18:32:45,073 | INFO     | found 0 job(s) in 20 queues
[2025-07-03 14:32:46] 2025-07-03 18:32:45,073 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-03 14:32:46] 2025-07-03 18:32:45,073 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-03 14:32:46] 2025-07-03 18:32:45,073 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-03 14:32:46] 2025-07-03 18:32:45,073 | CRITICAL | thread 'MainThread' is not alive
[2025-07-03 14:32:46] 2025-07-03 18:32:45,074 | INFO     | [monitor] control thread has ended
[2025-07-03 14:32:46] 2025-07-03 18:32:45,285 [wrapper] ==== pilot stdout END ====
[2025-07-03 14:32:46] 2025-07-03 18:32:45,288 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-03 14:32:46] 2025-07-03 18:32:45,292 [wrapper] pilotpid: 295505
[2025-07-03 14:32:46] 2025-07-03 18:32:45,295 [wrapper] Pilot exit status: 0
[2025-07-03 14:32:46] 2025-07-03 18:32:45,308 [wrapper] pandaids: 6718152454 6718152454
[2025-07-03 14:32:46] 2025-07-03 18:32:45,372 [wrapper] cleanup supervisor_pilot 224343 295506
[2025-07-03 14:32:46] 2025-07-03 18:32:45,376 [wrapper] Test setup, not cleaning
[2025-07-03 14:32:46] 2025-07-03 18:32:45,380 [wrapper] apfmon messages muted
[2025-07-03 14:32:46] 2025-07-03 18:32:45,384 [wrapper] ==== wrapper stdout END ====
[2025-07-03 14:32:46] 2025-07-03 18:32:45,388 [wrapper] ==== wrapper stderr END ====
[2025-07-03 14:32:46]  *** Error codes and diagnostics ***
[2025-07-03 14:32:46]     "exeErrorCode": 0,
[2025-07-03 14:32:46]     "exeErrorDiag": "",
[2025-07-03 14:32:46]     "pilotErrorCode": 0,
[2025-07-03 14:32:46]     "pilotErrorDiag": "",
[2025-07-03 14:32:46]  *** Listing of results directory ***
[2025-07-03 14:32:46] total 744096
[2025-07-03 14:32:46] drwx------ 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas    530466 Jul  2 23:39 pilot3.tar.gz
[2025-07-03 14:32:46] -rwx------ 1 boincer umatlas     36292 Jul  2 23:52 runpilot2-wrapper.sh
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas      5112 Jul  2 23:52 queuedata.json
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas       100 Jul  2 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-03 14:32:46] -rwxr-xr-x 1 boincer umatlas      7986 Jul  2 23:54 run_atlas
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas       105 Jul  2 23:54 job.xml
[2025-07-03 14:32:46] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 EVNT.45436099._000005.pool.root.1
[2025-07-03 14:32:46] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 ATLAS.root_0
[2025-07-03 14:32:46] -rw-r--r-- 2 boincer umatlas     15095 Jul  2 23:54 start_atlas.sh
[2025-07-03 14:32:46] drwxrwx--x 2 boincer umatlas      4096 Jul  2 23:54 shared
[2025-07-03 14:32:46] -rw-r--r-- 2 boincer umatlas    542897 Jul  2 23:54 input.tar.gz
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas         0 Jul  2 23:54 boinc_lockfile
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas      2627 Jul  3 05:48 pandaJob.out
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas    969766 Jul  3 05:48 agis_schedconf.cvmfs.json
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas      6386 Jul  3 14:27 init_data.xml
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas 206725038 Jul  3 14:31 HITS.45436103._000116.pool.root.1
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas       533 Jul  3 14:31 boinc_task_state.xml
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas        96 Jul  3 14:31 pilot_heartbeat.json
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas      1088 Jul  3 14:31 memory_monitor_summary.json
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas   1574083 Jul  3 14:32 agis_ddmendpoints.agis.ALL.json
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas    563548 Jul  3 14:32 log.45436103._000116.job.log.tgz.1
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas      7867 Jul  3 14:32 heartbeat.json
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas      8192 Jul  3 14:32 boinc_mmap_file
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas        29 Jul  3 14:32 wrapper_checkpoint.txt
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas       892 Jul  3 14:32 pilotlog.txt
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas   2748239 Jul  3 14:32 log.45436103._000116.job.log.1
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas       357 Jul  3 14:32 output.list
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas       620 Jul  3 14:32 runtime_log
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas   3328000 Jul  3 14:32 result.tar.gz
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas       791 Jul  3 14:32 Tb7NDmBBQr7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmT46KDmf04xbm.diag
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas      8756 Jul  3 14:32 runtime_log.err
[2025-07-03 14:32:46] -rw-r--r-- 1 boincer umatlas     23321 Jul  3 14:32 stderr.txt
[2025-07-03 14:32:46] HITS file was successfully produced:
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas 206725038 Jul  3 14:31 shared/HITS.pool.root.1
[2025-07-03 14:32:46]  *** Contents of shared directory: ***
[2025-07-03 14:32:46] total 471684
[2025-07-03 14:32:46] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 ATLAS.root_0
[2025-07-03 14:32:46] -rw-r--r-- 2 boincer umatlas     15095 Jul  2 23:54 start_atlas.sh
[2025-07-03 14:32:46] -rw-r--r-- 2 boincer umatlas    542897 Jul  2 23:54 input.tar.gz
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas 206725038 Jul  3 14:31 HITS.pool.root.1
[2025-07-03 14:32:46] -rw------- 1 boincer umatlas   3328000 Jul  3 14:32 result.tar.gz
14:32:47 (273709): run_atlas exited; CPU time 128500.838459
14:32:47 (273709): called boinc_finish(0)

</stderr_txt>
]]>

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