Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:54:12 (24678): wrapper (7.7.26015): starting
23:54:12 (24678): wrapper: running run_atlas (--nthreads 8)
[2025-07-02 23:54:12] Arguments: --nthreads 8
[2025-07-02 23:54:12] Threads: 8
[2025-07-02 23:54:12] Checking for CVMFS
[2025-07-02 23:54:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-02 23:54:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-02 23:54:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-02 23:54:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-02 23:54:13] 2.11.2.0 300311 13748 171184 147870 2 348 17078358 18432000 9416 130560 0 58952153 99.521 81729827 61019 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-02 23:54:13] CVMFS is ok
[2025-07-02 23:54:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-02 23:54:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-02 23:54:13] Further information can be found at the LHC@home message board.
[2025-07-02 23:54:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-02 23:54:13] Checking for apptainer binary...
[2025-07-02 23:54:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-02 23:54:13] Running /usr/bin/apptainer --version
[2025-07-02 23:54:13] apptainer version 1.3.2-1.el7
[2025-07-02 23:54:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-02 23:54:14] c-211-35-2.aglt2.org
[2025-07-02 23:54:14] apptainer works
[2025-07-02 23:54:14] Set ATHENA_PROC_NUMBER=8
[2025-07-02 23:54:14] Set ATHENA_CORE_NUMBER=8
[2025-07-02 23:54:14] Starting ATLAS job with PandaID=6718152446
[2025-07-02 23:54:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:40:04 (24678): BOINC client no longer exists - exiting
05:40:04 (24678): timer handler: client dead, exiting
05:47:57 (273708): wrapper (7.7.26015): starting
05:47:57 (273708): wrapper: running run_atlas (--nthreads 8)
[2025-07-03 05:47:57] Arguments: --nthreads 8
[2025-07-03 05:47:57] Threads: 8
[2025-07-03 05:47:57] This job has been restarted, cleaning up previous attempt
[2025-07-03 05:47:57] Checking for CVMFS
[2025-07-03 05:47:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-03 05:47:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-03 05:47:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-03 05:47:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-03 05:47:58] 2.11.2.0 300311 14102 175824 147878 1 61 17196522 18432001 14429 130560 0 61328935 99.540 81773327 61013 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-03 05:47:58] CVMFS is ok
[2025-07-03 05:47:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-03 05:47:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-03 05:47:58] Further information can be found at the LHC@home message board.
[2025-07-03 05:47:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-03 05:47:58] Checking for apptainer binary...
[2025-07-03 05:47:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-03 05:47:58] Running /usr/bin/apptainer --version
[2025-07-03 05:47:58] apptainer version 1.3.2-1.el7
[2025-07-03 05:47:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-03 05:48:00] c-211-35-2.aglt2.org
[2025-07-03 05:48:00] apptainer works
[2025-07-03 05:48:00] Set ATHENA_PROC_NUMBER=8
[2025-07-03 05:48:00] Set ATHENA_CORE_NUMBER=8
[2025-07-03 05:48:00] Starting ATLAS job with PandaID=6718152446
[2025-07-03 05:48:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-03 14:21:55]  *** The last 200 lines of the pilot log: ***
[2025-07-03 14:21:55] 2025-07-03 18:21:18,821 | INFO     | extracted standard memory fields from prmon json
[2025-07-03 14:21:55] 2025-07-03 18:21:18,822 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-03 14:21:55] 2025-07-03 18:21:18,822 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-03 14:21:55] 2025-07-03 18:21:18,822 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-03 14:21:55] 2025-07-03 18:21:18,828 | INFO     | fitting pss+swap vs Time
[2025-07-03 14:21:55] 2025-07-03 18:21:18,829 | INFO     | sum of square deviations: 39698501181.71414
[2025-07-03 14:21:55] 2025-07-03 18:21:18,833 | INFO     | sum of deviations: 108052892186.07135
[2025-07-03 14:21:55] 2025-07-03 18:21:18,833 | INFO     | mean x: 1751551473.642857
[2025-07-03 14:21:55] 2025-07-03 18:21:18,833 | INFO     | mean y: 2473118.617063492
[2025-07-03 14:21:55] 2025-07-03 18:21:18,833 | INFO     | -- intersect: -4764966379.251505
[2025-07-03 14:21:55] 2025-07-03 18:21:18,833 | INFO     | intersect: -4764966379.251505
[2025-07-03 14:21:55] 2025-07-03 18:21:18,834 | INFO     | chi2: 3.2760150136524127
[2025-07-03 14:21:55] 2025-07-03 18:21:18,834 | INFO     | sum of square deviations: 38528715161.61121
[2025-07-03 14:21:55] 2025-07-03 18:21:18,838 | INFO     | sum of deviations: 174152946860.5472
[2025-07-03 14:21:55] 2025-07-03 18:21:18,838 | INFO     | mean x: 1751551321.1442885
[2025-07-03 14:21:55] 2025-07-03 18:21:18,838 | INFO     | mean y: 2481683.0340681365
[2025-07-03 14:21:55] 2025-07-03 18:21:18,838 | INFO     | -- intersect: -7914673687.324415
[2025-07-03 14:21:55] 2025-07-03 18:21:18,838 | INFO     | intersect: -7914673687.324415
[2025-07-03 14:21:55] 2025-07-03 18:21:18,839 | INFO     | chi2: 1.700791963159685
[2025-07-03 14:21:55] 2025-07-03 18:21:18,839 | INFO     | current chi2=1.700791963159685 (change=48.08351133704114 %)
[2025-07-03 14:21:55] 2025-07-03 18:21:18,840 | INFO     | sum of square deviations: 37382138879.00589
[2025-07-03 14:21:55] 2025-07-03 18:21:18,844 | INFO     | sum of deviations: 172229662789.9678
[2025-07-03 14:21:55] 2025-07-03 18:21:18,844 | INFO     | mean x: 1751551168.645749
[2025-07-03 14:21:55] 2025-07-03 18:21:18,844 | INFO     | mean y: 2481427.222672065
[2025-07-03 14:21:55] 2025-07-03 18:21:18,844 | INFO     | -- intersect: -8067390339.923619
[2025-07-03 14:21:55] 2025-07-03 18:21:18,844 | INFO     | intersect: -8067390339.923619
[2025-07-03 14:21:55] 2025-07-03 18:21:18,845 | INFO     | chi2: 1.7003306867524985
[2025-07-03 14:21:55] 2025-07-03 18:21:18,845 | INFO     | current chi2=1.7003306867524985 (change=0.027121271571013916 %)
[2025-07-03 14:21:55] 2025-07-03 18:21:18,845 | INFO     | right removable region: 493
[2025-07-03 14:21:55] 2025-07-03 18:21:18,845 | INFO     | sum of square deviations: 38528671241.611244
[2025-07-03 14:21:55] 2025-07-03 18:21:18,849 | INFO     | sum of deviations: 20289788964.693436
[2025-07-03 14:21:55] 2025-07-03 18:21:18,850 | INFO     | mean x: 1751551626.1442885
[2025-07-03 14:21:55] 2025-07-03 18:21:18,850 | INFO     | mean y: 2484517.629258517
[2025-07-03 14:21:55] 2025-07-03 18:21:18,850 | INFO     | -- intersect: -919909422.0000757
[2025-07-03 14:21:55] 2025-07-03 18:21:18,850 | INFO     | intersect: -919909422.0000757
[2025-07-03 14:21:55] 2025-07-03 18:21:18,850 | INFO     | chi2: 1.71543340401633
[2025-07-03 14:21:55] 2025-07-03 18:21:18,850 | INFO     | current chi2=1.71543340401633 (change=47.636582956199526 %)
[2025-07-03 14:21:55] 2025-07-03 18:21:18,851 | INFO     | sum of square deviations: 37382051039.00589
[2025-07-03 14:21:55] 2025-07-03 18:21:18,855 | INFO     | sum of deviations: -4963146180.028347
[2025-07-03 14:21:55] 2025-07-03 18:21:18,855 | INFO     | mean x: 1751551778.645749
[2025-07-03 14:21:55] 2025-07-03 18:21:18,855 | INFO     | mean y: 2487876.319838057
[2025-07-03 14:21:55] 2025-07-03 18:21:18,856 | INFO     | -- intersect: 235038185.29664287
[2025-07-03 14:21:55] 2025-07-03 18:21:18,856 | INFO     | intersect: 235038185.29664287
[2025-07-03 14:21:55] 2025-07-03 18:21:18,856 | INFO     | chi2: 1.634311764889436
[2025-07-03 14:21:55] 2025-07-03 18:21:18,856 | INFO     | current chi2=1.634311764889436 (change=4.728929665060995 %)
[2025-07-03 14:21:55] 2025-07-03 18:21:18,856 | INFO     | left removable region: 20
[2025-07-03 14:21:55] 2025-07-03 18:21:18,857 | INFO     | sum of square deviations: 32814544675.039997
[2025-07-03 14:21:55] 2025-07-03 18:21:18,860 | INFO     | sum of deviations: 43859137084.87311
[2025-07-03 14:21:55] 2025-07-03 18:21:18,860 | INFO     | mean x: 1751551748.1522198
[2025-07-03 14:21:55] 2025-07-03 18:21:18,860 | INFO     | mean y: 2498939.8350951374
[2025-07-03 14:21:55] 2025-07-03 18:21:18,860 | INFO     | -- intersect: -2338583314.824095
[2025-07-03 14:21:55] 2025-07-03 18:21:18,861 | INFO     | intersect: -2338583314.824095
[2025-07-03 14:21:55] 2025-07-03 18:21:18,861 | INFO     | chi2: 0.008306978404985387
[2025-07-03 14:21:55] 2025-07-03 18:21:18,861 | INFO     | -- intersect: -2338583314.824095
[2025-07-03 14:21:55] 2025-07-03 18:21:18,861 | INFO     | current memory leak: 1.34 B/s (using 473 data points, chi2=0.01)
[2025-07-03 14:21:55] 2025-07-03 18:21:18,862 | INFO     | could have reported an average CPU frequency of 2588 MHz (20 samples)
[2025-07-03 14:21:55] 2025-07-03 18:21:18,862 | INFO     | ..............................
[2025-07-03 14:21:55] 2025-07-03 18:21:18,862 | INFO     | . Timing measurements:
[2025-07-03 14:21:55] 2025-07-03 18:21:18,862 | INFO     | . get job = 0 s
[2025-07-03 14:21:55] 2025-07-03 18:21:18,862 | INFO     | . initial setup = 2 s
[2025-07-03 14:21:55] 2025-07-03 18:21:18,862 | INFO     | . payload setup = 10 s
[2025-07-03 14:21:55] 2025-07-03 18:21:18,862 | INFO     | . stage-in = 0 s
[2025-07-03 14:21:55] 2025-07-03 18:21:18,862 | INFO     | . payload execution = 30703 s
[2025-07-03 14:21:55] 2025-07-03 18:21:18,862 | INFO     | . stage-out = 4 s
[2025-07-03 14:21:55] 2025-07-03 18:21:18,862 | INFO     | . log creation = 0 s
[2025-07-03 14:21:55] 2025-07-03 18:21:18,862 | INFO     | ..............................
[2025-07-03 14:21:55] 2025-07-03 18:21:19,136 | INFO     | 
[2025-07-03 14:21:55] 2025-07-03 18:21:19,136 | INFO     | job summary report
[2025-07-03 14:21:55] 2025-07-03 18:21:19,136 | INFO     | --------------------------------------------------
[2025-07-03 14:21:55] 2025-07-03 18:21:19,136 | INFO     | PanDA job id: 6718152446
[2025-07-03 14:21:55] 2025-07-03 18:21:19,136 | INFO     | task id: 45436103
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | errors: (none)
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | pilot state: finished 
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | transexitcode: 0
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | exeerrorcode: 0
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | exeerrordiag: 
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | exitcode: 0
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | exitmsg: OK
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | cpuconsumptiontime: 121522 s
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | nevents: 400
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | neventsw: 0
[2025-07-03 14:21:55] 2025-07-03 18:21:19,137 | INFO     | pid: 7035
[2025-07-03 14:21:55] 2025-07-03 18:21:19,138 | INFO     | pgrp: 7035
[2025-07-03 14:21:55] 2025-07-03 18:21:19,138 | INFO     | corecount: 8
[2025-07-03 14:21:55] 2025-07-03 18:21:19,138 | INFO     | event service: False
[2025-07-03 14:21:55] 2025-07-03 18:21:19,138 | INFO     | sizes: {0: 2366510, 1: 2366709, 6: 2366971, 11: 2366999, 30718: 2405701, 30723: 2414696, 30725: 2414880, 30767: 2415074}
[2025-07-03 14:21:55] 2025-07-03 18:21:19,138 | INFO     | --------------------------------------------------
[2025-07-03 14:21:55] 2025-07-03 18:21:19,138 | INFO     | 
[2025-07-03 14:21:55] 2025-07-03 18:21:19,138 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-03 14:21:55] 2025-07-03 18:21:19,206 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,207 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,207 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,207 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,207 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,207 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,207 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,207 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,207 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,207 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,208 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,208 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,208 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,208 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,208 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,208 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,208 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,208 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-03 14:21:55] 2025-07-03 18:21:19,208 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,208 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-03 14:21:55] 2025-07-03 18:21:19,208 | INFO     | job 6718152446 has completed (purged errors)
[2025-07-03 14:21:55] 2025-07-03 18:21:19,209 | INFO     | overall cleanup function is called
[2025-07-03 14:21:55] 2025-07-03 18:21:20,218 | INFO     | --- collectZombieJob: --- 10, [7035]
[2025-07-03 14:21:55] 2025-07-03 18:21:20,218 | INFO     | zombie collector waiting for pid 7035
[2025-07-03 14:21:55] 2025-07-03 18:21:20,218 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-03 14:21:55] 2025-07-03 18:21:20,218 | INFO     | collected zombie processes
[2025-07-03 14:21:55] 2025-07-03 18:21:20,218 | INFO     | will attempt to kill all subprocesses of pid=7035
[2025-07-03 14:21:55] 2025-07-03 18:21:20,558 | INFO     | process IDs to be killed: [7035] (in reverse order)
[2025-07-03 14:21:55] 2025-07-03 18:21:20,717 | WARNING  | found no corresponding commands to process id(s)
[2025-07-03 14:21:55] 2025-07-03 18:21:20,717 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-03 14:21:55] 2025-07-03 18:21:20,733 | INFO     | did not find any defunct processes belonging to 7035
[2025-07-03 14:21:55] 2025-07-03 18:21:20,747 | INFO     | did not find any defunct processes belonging to 7035
[2025-07-03 14:21:55] 2025-07-03 18:21:20,748 | INFO     | ready for new job
[2025-07-03 14:21:55] 2025-07-03 18:21:20,748 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-03 14:21:55] 2025-07-03 18:21:20,752 | INFO     | ***************************************
[2025-07-03 14:21:55] 2025-07-03 18:21:20,752 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-03 14:21:55] 2025-07-03 18:21:20,752 | INFO     | ***************************************
[2025-07-03 14:21:55] 2025-07-03 18:21:20,752 | INFO     | 
[2025-07-03 14:21:55] 2025-07-03 18:21:20,758 | INFO     | architecture information:
[2025-07-03 14:21:55] 2025-07-03 18:21:20,759 | INFO     | executing command: cat /etc/os-release
[2025-07-03 14:21:55] 2025-07-03 18:21:20,893 | INFO     | cat /etc/os-release:
[2025-07-03 14:21:55] NAME="CentOS Linux"
[2025-07-03 14:21:55] VERSION="7 (Core)"
[2025-07-03 14:21:55] ID="centos"
[2025-07-03 14:21:55] ID_LIKE="rhel fedora"
[2025-07-03 14:21:55] VERSION_ID="7"
[2025-07-03 14:21:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-03 14:21:55] ANSI_COLOR="0;31"
[2025-07-03 14:21:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-03 14:21:55] HOME_URL="https://www.centos.org/"
[2025-07-03 14:21:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-03 14:21:55] 
[2025-07-03 14:21:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-03 14:21:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-03 14:21:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-03 14:21:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-03 14:21:55] 
[2025-07-03 14:21:55] 2025-07-03 18:21:20,893 | INFO     | ***************************************
[2025-07-03 14:21:55] 2025-07-03 18:21:21,397 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-03 14:21:55] 2025-07-03 18:21:21,576 | INFO     | sufficient remaining disk space (102914588672 B)
[2025-07-03 14:21:55] 2025-07-03 18:21:21,576 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-03 14:21:55] 2025-07-03 18:21:21,577 | INFO     | current server update state: UPDATING_FINAL
[2025-07-03 14:21:55] 2025-07-03 18:21:21,577 | INFO     | update_server=False
[2025-07-03 14:21:55] 2025-07-03 18:21:21,577 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-03 14:21:55] 2025-07-03 18:21:21,795 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-03 14:21:55] 2025-07-03 18:21:21,795 | INFO     | aborting loop
[2025-07-03 14:21:55] 2025-07-03 18:21:22,118 | INFO     | all data control threads have been joined
[2025-07-03 14:21:55] 2025-07-03 18:21:22,518 | INFO     | all job control threads have been joined
[2025-07-03 14:21:55] 2025-07-03 18:21:22,583 | INFO     | [job] retrieve thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:22,638 | INFO     | [payload] validate_post thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:22,646 | INFO     | [job] validate thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:22,656 | INFO     | [payload] failed_post thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:22,696 | INFO     | [data] copytool_in thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:22,702 | INFO     | all payload control threads have been joined
[2025-07-03 14:21:55] 2025-07-03 18:21:22,801 | INFO     | [job] job monitor thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:22,841 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-03 14:21:55] 2025-07-03 18:21:23,098 | INFO     | [payload] validate_pre thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:23,124 | INFO     | [data] control thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:23,287 | INFO     | [payload] execute_payloads thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:23,450 | INFO     | [job] create_data_payload thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:23,524 | INFO     | [job] control thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:23,683 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-03 14:21:55] 2025-07-03 18:21:23,707 | INFO     | [payload] control thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:23,956 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-03 14:21:55] 2025-07-03 18:21:24,063 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:24,846 | INFO     | [data] copytool_out thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:24,961 | INFO     | [job] queue monitor thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:27,693 | INFO     | [data] queue_monitor thread has finished
[2025-07-03 14:21:55] 2025-07-03 18:21:29,039 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140144366008128)>', '<ExcThread(monitor, started 140143709124352)>']
[2025-07-03 14:21:55] 2025-07-03 18:21:34,065 | INFO     | all workflow threads have been joined
[2025-07-03 14:21:55] 2025-07-03 18:21:34,065 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-03 14:21:55] 2025-07-03 18:21:34,065 | INFO     | traces error code: 0
[2025-07-03 14:21:55] 2025-07-03 18:21:34,066 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-03 14:21:55] 2025-07-03 18:21:52,101 | INFO     | PID=295575 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-03 14:21:55] 2025-07-03 18:21:52,102 | INFO     | .. there are 17 such processes running
[2025-07-03 14:21:55] 2025-07-03 18:21:52,107 | INFO     | found 0 job(s) in 20 queues
[2025-07-03 14:21:55] 2025-07-03 18:21:52,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-03 14:21:55] 2025-07-03 18:21:52,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-03 14:21:55] 2025-07-03 18:21:52,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-03 14:21:55] 2025-07-03 18:21:52,107 | INFO     | [monitor] control thread has ended
[2025-07-03 14:21:55] 2025-07-03 18:21:52,628 [wrapper] ==== pilot stdout END ====
[2025-07-03 14:21:55] 2025-07-03 18:21:52,678 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-03 14:21:55] 2025-07-03 18:21:52,728 [wrapper] pilotpid: 295575
[2025-07-03 14:21:55] 2025-07-03 18:21:52,778 [wrapper] Pilot exit status: 0
[2025-07-03 14:21:55] 2025-07-03 18:21:52,996 [wrapper] pandaids: 6718152446 6718152446
[2025-07-03 14:21:55] 2025-07-03 18:21:53,722 [wrapper] cleanup supervisor_pilot 224344 295576
[2025-07-03 14:21:55] 2025-07-03 18:21:53,742 [wrapper] Test setup, not cleaning
[2025-07-03 14:21:55] 2025-07-03 18:21:53,756 [wrapper] apfmon messages muted
[2025-07-03 14:21:55] 2025-07-03 18:21:53,771 [wrapper] ==== wrapper stdout END ====
[2025-07-03 14:21:55] 2025-07-03 18:21:53,820 [wrapper] ==== wrapper stderr END ====
[2025-07-03 14:21:55]  *** Error codes and diagnostics ***
[2025-07-03 14:21:55]     "exeErrorCode": 0,
[2025-07-03 14:21:55]     "exeErrorDiag": "",
[2025-07-03 14:21:55]     "pilotErrorCode": 0,
[2025-07-03 14:21:55]     "pilotErrorDiag": "",
[2025-07-03 14:21:55]  *** Listing of results directory ***
[2025-07-03 14:21:55] total 742800
[2025-07-03 14:21:55] drwx------ 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas    530466 Jul  2 23:39 pilot3.tar.gz
[2025-07-03 14:21:55] -rwx------ 1 boincer umatlas     36292 Jul  2 23:52 runpilot2-wrapper.sh
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas      5112 Jul  2 23:52 queuedata.json
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas       100 Jul  2 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-03 14:21:55] -rwxr-xr-x 1 boincer umatlas      7986 Jul  2 23:54 run_atlas
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas       105 Jul  2 23:54 job.xml
[2025-07-03 14:21:55] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 EVNT.45436099._000005.pool.root.1
[2025-07-03 14:21:55] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 ATLAS.root_0
[2025-07-03 14:21:55] -rw-r--r-- 2 boincer umatlas     15095 Jul  2 23:54 start_atlas.sh
[2025-07-03 14:21:55] drwxrwx--x 2 boincer umatlas      4096 Jul  2 23:54 shared
[2025-07-03 14:21:55] -rw-r--r-- 2 boincer umatlas    542900 Jul  2 23:54 input.tar.gz
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas         0 Jul  2 23:54 boinc_lockfile
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas      2627 Jul  3 05:48 pandaJob.out
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas    969766 Jul  3 05:48 agis_schedconf.cvmfs.json
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas 205610540 Jul  3 14:18 HITS.45436103._000108.pool.root.1
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas       533 Jul  3 14:18 boinc_task_state.xml
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas      1065 Jul  3 14:20 memory_monitor_summary.json
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas   1574083 Jul  3 14:20 agis_ddmendpoints.agis.ALL.json
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas    544107 Jul  3 14:20 log.45436103._000108.job.log.tgz.1
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas      6386 Jul  3 14:21 init_data.xml
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas      7863 Jul  3 14:21 heartbeat.json
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas        96 Jul  3 14:21 pilot_heartbeat.json
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas       822 Jul  3 14:21 pilotlog.txt
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas        29 Jul  3 14:21 wrapper_checkpoint.txt
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas      8192 Jul  3 14:21 boinc_mmap_file
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas   2662943 Jul  3 14:21 log.45436103._000108.job.log.1
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas       357 Jul  3 14:21 output.list
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas       620 Jul  3 14:21 runtime_log
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas   3225600 Jul  3 14:21 result.tar.gz
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas       791 Jul  3 14:21 SHzNDmBBQr7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmL46KDmB26Y3n.diag
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas      8756 Jul  3 14:21 runtime_log.err
[2025-07-03 14:21:55] -rw-r--r-- 1 boincer umatlas     23237 Jul  3 14:21 stderr.txt
[2025-07-03 14:21:55] HITS file was successfully produced:
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas 205610540 Jul  3 14:18 shared/HITS.pool.root.1
[2025-07-03 14:21:55]  *** Contents of shared directory: ***
[2025-07-03 14:21:55] total 470492
[2025-07-03 14:21:55] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 ATLAS.root_0
[2025-07-03 14:21:55] -rw-r--r-- 2 boincer umatlas     15095 Jul  2 23:54 start_atlas.sh
[2025-07-03 14:21:55] -rw-r--r-- 2 boincer umatlas    542900 Jul  2 23:54 input.tar.gz
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas 205610540 Jul  3 14:18 HITS.pool.root.1
[2025-07-03 14:21:55] -rw------- 1 boincer umatlas   3225600 Jul  3 14:21 result.tar.gz
14:21:57 (273708): run_atlas exited; CPU time 122727.129196
14:21:57 (273708): called boinc_finish(0)

</stderr_txt>
]]>

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