Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:54:06 (22503): wrapper (7.7.26015): starting
23:54:06 (22503): wrapper: running run_atlas (--nthreads 8)
[2025-07-02 23:54:06] Arguments: --nthreads 8
[2025-07-02 23:54:06] Threads: 8
[2025-07-02 23:54:06] Checking for CVMFS
[2025-07-02 23:54:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-02 23:54:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-02 23:54:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-02 23:54:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-02 23:54:06] 2.11.2.0 300311 13748 170920 147870 2 348 17078358 18432000 9412 130560 0 58935579 99.521 81729827 61019 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-02 23:54:06] CVMFS is ok
[2025-07-02 23:54:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-02 23:54:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-02 23:54:06] Further information can be found at the LHC@home message board.
[2025-07-02 23:54:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-02 23:54:06] Checking for apptainer binary...
[2025-07-02 23:54:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-02 23:54:06] Running /usr/bin/apptainer --version
[2025-07-02 23:54:06] apptainer version 1.3.2-1.el7
[2025-07-02 23:54:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-02 23:54:08] c-211-35-2.aglt2.org
[2025-07-02 23:54:08] apptainer works
[2025-07-02 23:54:08] Set ATHENA_PROC_NUMBER=8
[2025-07-02 23:54:08] Set ATHENA_CORE_NUMBER=8
[2025-07-02 23:54:08] Starting ATLAS job with PandaID=6718152453
[2025-07-02 23:54:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:47:57 (273707): wrapper (7.7.26015): starting
05:47:57 (273707): wrapper: running run_atlas (--nthreads 8)
[2025-07-03 05:47:57] Arguments: --nthreads 8
[2025-07-03 05:47:57] Threads: 8
[2025-07-03 05:47:57] This job has been restarted, cleaning up previous attempt
[2025-07-03 05:47:57] Checking for CVMFS
[2025-07-03 05:47:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-03 05:47:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-03 05:47:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-03 05:47:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-03 05:47:58] 2.11.2.0 300311 14102 175824 147878 1 61 17196522 18432001 14429 130560 0 61328935 99.540 81773327 61013 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-03 05:47:58] CVMFS is ok
[2025-07-03 05:47:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-03 05:47:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-03 05:47:58] Further information can be found at the LHC@home message board.
[2025-07-03 05:47:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-03 05:47:58] Checking for apptainer binary...
[2025-07-03 05:47:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-03 05:47:58] Running /usr/bin/apptainer --version
[2025-07-03 05:47:58] apptainer version 1.3.2-1.el7
[2025-07-03 05:47:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-03 05:48:00] c-211-35-2.aglt2.org
[2025-07-03 05:48:00] apptainer works
[2025-07-03 05:48:00] Set ATHENA_PROC_NUMBER=8
[2025-07-03 05:48:00] Set ATHENA_CORE_NUMBER=8
[2025-07-03 05:48:00] Starting ATLAS job with PandaID=6718152453
[2025-07-03 05:48:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-03 14:35:51]  *** The last 200 lines of the pilot log: ***
[2025-07-03 14:35:51] 2025-07-03 18:35:17,778 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-03 14:35:51] 2025-07-03 18:35:17,778 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-03 14:35:51] 2025-07-03 18:35:17,778 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-03 14:35:51] 2025-07-03 18:35:17,784 | INFO     | fitting pss+swap vs Time
[2025-07-03 14:35:51] 2025-07-03 18:35:17,784 | INFO     | sum of square deviations: 43099185015.592606
[2025-07-03 14:35:51] 2025-07-03 18:35:17,788 | INFO     | sum of deviations: 154316700703.36276
[2025-07-03 14:35:51] 2025-07-03 18:35:17,789 | INFO     | mean x: 1751551900.623552
[2025-07-03 14:35:51] 2025-07-03 18:35:17,789 | INFO     | mean y: 2472500.1505791508
[2025-07-03 14:35:51] 2025-07-03 18:35:17,789 | INFO     | -- intersect: -6268961874.238237
[2025-07-03 14:35:51] 2025-07-03 18:35:17,789 | INFO     | intersect: -6268961874.238237
[2025-07-03 14:35:51] 2025-07-03 18:35:17,790 | INFO     | chi2: 2.531480212968959
[2025-07-03 14:35:51] 2025-07-03 18:35:17,790 | INFO     | sum of square deviations: 41863172058.01572
[2025-07-03 14:35:51] 2025-07-03 18:35:17,794 | INFO     | sum of deviations: 186288601273.4074
[2025-07-03 14:35:51] 2025-07-03 18:35:17,795 | INFO     | mean x: 1751551748.1247563
[2025-07-03 14:35:51] 2025-07-03 18:35:17,795 | INFO     | mean y: 2476411.2592592593
[2025-07-03 14:35:51] 2025-07-03 18:35:17,795 | INFO     | -- intersect: -7791823666.239898
[2025-07-03 14:35:51] 2025-07-03 18:35:17,795 | INFO     | intersect: -7791823666.239898
[2025-07-03 14:35:51] 2025-07-03 18:35:17,795 | INFO     | chi2: 1.7401920577179804
[2025-07-03 14:35:51] 2025-07-03 18:35:17,795 | INFO     | current chi2=1.7401920577179804 (change=31.257923771126134 %)
[2025-07-03 14:35:51] 2025-07-03 18:35:17,796 | INFO     | sum of square deviations: 40650957669.43304
[2025-07-03 14:35:51] 2025-07-03 18:35:17,799 | INFO     | sum of deviations: 183836143821.29935
[2025-07-03 14:35:51] 2025-07-03 18:35:17,800 | INFO     | mean x: 1751551595.6220472
[2025-07-03 14:35:51] 2025-07-03 18:35:17,800 | INFO     | mean y: 2476102.8661417323
[2025-07-03 14:35:51] 2025-07-03 18:35:17,800 | INFO     | -- intersect: -7918579377.834714
[2025-07-03 14:35:51] 2025-07-03 18:35:17,800 | INFO     | intersect: -7918579377.834714
[2025-07-03 14:35:51] 2025-07-03 18:35:17,800 | INFO     | chi2: 1.7399233578140585
[2025-07-03 14:35:51] 2025-07-03 18:35:17,800 | INFO     | current chi2=1.7399233578140585 (change=0.015440818887211084 %)
[2025-07-03 14:35:51] 2025-07-03 18:35:17,800 | INFO     | right removable region: 507
[2025-07-03 14:35:51] 2025-07-03 18:35:17,801 | INFO     | sum of square deviations: 41863133018.015724
[2025-07-03 14:35:51] 2025-07-03 18:35:17,805 | INFO     | sum of deviations: 62941987998.81872
[2025-07-03 14:35:51] 2025-07-03 18:35:17,805 | INFO     | mean x: 1751552053.1247563
[2025-07-03 14:35:51] 2025-07-03 18:35:17,805 | INFO     | mean y: 2483734.5497076022
[2025-07-03 14:35:51] 2025-07-03 18:35:17,806 | INFO     | -- intersect: -2631006889.7578535
[2025-07-03 14:35:51] 2025-07-03 18:35:17,806 | INFO     | intersect: -2631006889.7578535
[2025-07-03 14:35:51] 2025-07-03 18:35:17,807 | INFO     | chi2: 0.9471275899692515
[2025-07-03 14:35:51] 2025-07-03 18:35:17,807 | INFO     | current chi2=0.9471275899692515 (change=62.5860164690584 %)
[2025-07-03 14:35:51] 2025-07-03 18:35:17,808 | INFO     | sum of square deviations: 40650941932.93733
[2025-07-03 14:35:51] 2025-07-03 18:35:17,814 | INFO     | sum of deviations: 37384233679.91736
[2025-07-03 14:35:51] 2025-07-03 18:35:17,815 | INFO     | mean x: 1751552205.6259842
[2025-07-03 14:35:51] 2025-07-03 18:35:17,815 | INFO     | mean y: 2486949.9153543306
[2025-07-03 14:35:51] 2025-07-03 18:35:17,815 | INFO     | -- intersect: -1608310582.5433235
[2025-07-03 14:35:51] 2025-07-03 18:35:17,815 | INFO     | intersect: -1608310582.5433235
[2025-07-03 14:35:51] 2025-07-03 18:35:17,816 | INFO     | chi2: 0.8714079726698418
[2025-07-03 14:35:51] 2025-07-03 18:35:17,816 | INFO     | current chi2=0.8714079726698418 (change=7.994658597356236 %)
[2025-07-03 14:35:51] 2025-07-03 18:35:17,816 | INFO     | left removable region: 20
[2025-07-03 14:35:51] 2025-07-03 18:35:17,817 | INFO     | sum of square deviations: 35815077932.106804
[2025-07-03 14:35:51] 2025-07-03 18:35:17,823 | INFO     | sum of deviations: 42436449210.40243
[2025-07-03 14:35:51] 2025-07-03 18:35:17,824 | INFO     | mean x: 1751552175.12731
[2025-07-03 14:35:51] 2025-07-03 18:35:17,824 | INFO     | mean y: 2494372.864476386
[2025-07-03 14:35:51] 2025-07-03 18:35:17,824 | INFO     | -- intersect: -2072878883.6188323
[2025-07-03 14:35:51] 2025-07-03 18:35:17,824 | INFO     | intersect: -2072878883.6188323
[2025-07-03 14:35:51] 2025-07-03 18:35:17,825 | INFO     | chi2: 0.006987575582360167
[2025-07-03 14:35:51] 2025-07-03 18:35:17,825 | INFO     | -- intersect: -2072878883.6188323
[2025-07-03 14:35:51] 2025-07-03 18:35:17,825 | INFO     | current memory leak: 1.18 B/s (using 487 data points, chi2=0.01)
[2025-07-03 14:35:51] 2025-07-03 18:35:17,827 | INFO     | could have reported an average CPU frequency of 2587 MHz (21 samples)
[2025-07-03 14:35:51] 2025-07-03 18:35:17,827 | INFO     | ..............................
[2025-07-03 14:35:51] 2025-07-03 18:35:17,827 | INFO     | . Timing measurements:
[2025-07-03 14:35:51] 2025-07-03 18:35:17,827 | INFO     | . get job = 0 s
[2025-07-03 14:35:51] 2025-07-03 18:35:17,827 | INFO     | . initial setup = 2 s
[2025-07-03 14:35:51] 2025-07-03 18:35:17,827 | INFO     | . payload setup = 10 s
[2025-07-03 14:35:51] 2025-07-03 18:35:17,827 | INFO     | . stage-in = 0 s
[2025-07-03 14:35:51] 2025-07-03 18:35:17,827 | INFO     | . payload execution = 31581 s
[2025-07-03 14:35:51] 2025-07-03 18:35:17,828 | INFO     | . stage-out = 2 s
[2025-07-03 14:35:51] 2025-07-03 18:35:17,828 | INFO     | . log creation = 0 s
[2025-07-03 14:35:51] 2025-07-03 18:35:17,828 | INFO     | ..............................
[2025-07-03 14:35:51] 2025-07-03 18:35:17,934 | INFO     | 
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | job summary report
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | --------------------------------------------------
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | PanDA job id: 6718152453
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | task id: 45436103
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | errors: (none)
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | pilot state: finished 
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | transexitcode: 0
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | exeerrorcode: 0
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | exeerrordiag: 
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | exitcode: 0
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | exitmsg: OK
[2025-07-03 14:35:51] 2025-07-03 18:35:17,935 | INFO     | cpuconsumptiontime: 125418 s
[2025-07-03 14:35:51] 2025-07-03 18:35:17,936 | INFO     | nevents: 400
[2025-07-03 14:35:51] 2025-07-03 18:35:17,936 | INFO     | neventsw: 0
[2025-07-03 14:35:51] 2025-07-03 18:35:17,936 | INFO     | pid: 7059
[2025-07-03 14:35:51] 2025-07-03 18:35:17,936 | INFO     | pgrp: 7059
[2025-07-03 14:35:51] 2025-07-03 18:35:17,936 | INFO     | corecount: 8
[2025-07-03 14:35:51] 2025-07-03 18:35:17,936 | INFO     | event service: False
[2025-07-03 14:35:51] 2025-07-03 18:35:17,936 | INFO     | sizes: {0: 2366510, 1: 2366709, 6: 2366971, 11: 2366999, 31595: 2406034, 31596: 2406033, 31599: 2415212, 31600: 2415268, 31606: 2415462}
[2025-07-03 14:35:51] 2025-07-03 18:35:17,936 | INFO     | --------------------------------------------------
[2025-07-03 14:35:51] 2025-07-03 18:35:17,936 | INFO     | 
[2025-07-03 14:35:51] 2025-07-03 18:35:17,936 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-03 14:35:51] 2025-07-03 18:35:17,965 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,965 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,965 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,966 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,967 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,967 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-03 14:35:51] 2025-07-03 18:35:17,967 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,967 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-03 14:35:51] 2025-07-03 18:35:17,967 | INFO     | job 6718152453 has completed (purged errors)
[2025-07-03 14:35:51] 2025-07-03 18:35:17,967 | INFO     | overall cleanup function is called
[2025-07-03 14:35:51] 2025-07-03 18:35:18,976 | INFO     | --- collectZombieJob: --- 10, [7059]
[2025-07-03 14:35:51] 2025-07-03 18:35:18,976 | INFO     | zombie collector waiting for pid 7059
[2025-07-03 14:35:51] 2025-07-03 18:35:18,976 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-03 14:35:51] 2025-07-03 18:35:18,976 | INFO     | collected zombie processes
[2025-07-03 14:35:51] 2025-07-03 18:35:18,976 | INFO     | will attempt to kill all subprocesses of pid=7059
[2025-07-03 14:35:51] 2025-07-03 18:35:19,238 | INFO     | process IDs to be killed: [7059] (in reverse order)
[2025-07-03 14:35:51] 2025-07-03 18:35:19,367 | WARNING  | found no corresponding commands to process id(s)
[2025-07-03 14:35:51] 2025-07-03 18:35:19,368 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-03 14:35:51] 2025-07-03 18:35:19,380 | INFO     | did not find any defunct processes belonging to 7059
[2025-07-03 14:35:51] 2025-07-03 18:35:19,392 | INFO     | did not find any defunct processes belonging to 7059
[2025-07-03 14:35:51] 2025-07-03 18:35:19,393 | INFO     | ready for new job
[2025-07-03 14:35:51] 2025-07-03 18:35:19,393 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-03 14:35:51] 2025-07-03 18:35:19,396 | INFO     | ***************************************
[2025-07-03 14:35:51] 2025-07-03 18:35:19,397 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-03 14:35:51] 2025-07-03 18:35:19,397 | INFO     | ***************************************
[2025-07-03 14:35:51] 2025-07-03 18:35:19,397 | INFO     | 
[2025-07-03 14:35:51] 2025-07-03 18:35:19,403 | INFO     | architecture information:
[2025-07-03 14:35:51] 2025-07-03 18:35:19,403 | INFO     | executing command: cat /etc/os-release
[2025-07-03 14:35:51] 2025-07-03 18:35:19,432 | INFO     | cat /etc/os-release:
[2025-07-03 14:35:51] NAME="CentOS Linux"
[2025-07-03 14:35:51] VERSION="7 (Core)"
[2025-07-03 14:35:51] ID="centos"
[2025-07-03 14:35:51] ID_LIKE="rhel fedora"
[2025-07-03 14:35:51] VERSION_ID="7"
[2025-07-03 14:35:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-03 14:35:51] ANSI_COLOR="0;31"
[2025-07-03 14:35:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-03 14:35:51] HOME_URL="https://www.centos.org/"
[2025-07-03 14:35:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-03 14:35:51] 
[2025-07-03 14:35:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-03 14:35:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-03 14:35:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-03 14:35:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-03 14:35:51] 
[2025-07-03 14:35:51] 2025-07-03 18:35:19,433 | INFO     | ***************************************
[2025-07-03 14:35:51] 2025-07-03 18:35:19,934 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-03 14:35:51] 2025-07-03 18:35:19,968 | INFO     | sufficient remaining disk space (105494085632 B)
[2025-07-03 14:35:51] 2025-07-03 18:35:19,968 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-03 14:35:51] 2025-07-03 18:35:19,969 | INFO     | current server update state: UPDATING_FINAL
[2025-07-03 14:35:51] 2025-07-03 18:35:19,969 | INFO     | update_server=False
[2025-07-03 14:35:51] 2025-07-03 18:35:19,969 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-03 14:35:51] 2025-07-03 18:35:19,969 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-03 14:35:51] 2025-07-03 18:35:19,969 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-03 14:35:51] 2025-07-03 18:35:19,969 | INFO     | aborting loop
[2025-07-03 14:35:51] 2025-07-03 18:35:20,242 | INFO     | all data control threads have been joined
[2025-07-03 14:35:51] 2025-07-03 18:35:20,358 | INFO     | all payload control threads have been joined
[2025-07-03 14:35:51] 2025-07-03 18:35:20,749 | INFO     | all job control threads have been joined
[2025-07-03 14:35:51] 2025-07-03 18:35:20,975 | INFO     | [job] retrieve thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:20,976 | INFO     | [job] job monitor thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:21,084 | INFO     | [payload] validate_post thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:21,248 | INFO     | [data] control thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:21,365 | INFO     | [payload] control thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:21,696 | INFO     | [payload] execute_payloads thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:21,755 | INFO     | [job] control thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:21,815 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-03 14:35:51] 2025-07-03 18:35:21,818 | INFO     | [job] validate thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:21,895 | INFO     | [data] copytool_in thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:21,915 | INFO     | [payload] failed_post thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:21,975 | INFO     | [data] copytool_out thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:21,983 | INFO     | [job] create_data_payload thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:22,204 | INFO     | [payload] validate_pre thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:22,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-03 14:35:51] 2025-07-03 18:35:23,950 | INFO     | [job] queue monitor thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:25,817 | INFO     | [data] queue_monitor thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:30,162 | INFO     | job.realtimelogging is not enabled
[2025-07-03 14:35:51] 2025-07-03 18:35:31,168 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-03 14:35:51] 2025-07-03 18:35:33,022 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145130170176)>', '<ExcThread(monitor, started 140144690579200)>']
[2025-07-03 14:35:51] 2025-07-03 18:35:38,048 | INFO     | all workflow threads have been joined
[2025-07-03 14:35:51] 2025-07-03 18:35:38,048 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-03 14:35:51] 2025-07-03 18:35:38,048 | INFO     | traces error code: 0
[2025-07-03 14:35:51] 2025-07-03 18:35:38,048 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-03 14:35:51] 2025-07-03 18:35:50,886 | INFO     | PID=295522 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-03 14:35:51] 2025-07-03 18:35:50,887 | INFO     | .. there are 13 such processes running
[2025-07-03 14:35:51] 2025-07-03 18:35:50,887 | INFO     | found 0 job(s) in 20 queues
[2025-07-03 14:35:51] 2025-07-03 18:35:50,887 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-03 14:35:51] 2025-07-03 18:35:50,887 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-03 14:35:51] 2025-07-03 18:35:50,888 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-03 14:35:51] 2025-07-03 18:35:50,888 | INFO     | [monitor] control thread has ended
[2025-07-03 14:35:51] 2025-07-03 18:35:51,037 [wrapper] ==== pilot stdout END ====
[2025-07-03 14:35:51] 2025-07-03 18:35:51,040 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-03 14:35:51] 2025-07-03 18:35:51,044 [wrapper] pilotpid: 295522
[2025-07-03 14:35:51] 2025-07-03 18:35:51,048 [wrapper] Pilot exit status: 0
[2025-07-03 14:35:51] 2025-07-03 18:35:51,069 [wrapper] pandaids: 6718152453 6718152453
[2025-07-03 14:35:51] 2025-07-03 18:35:51,121 [wrapper] cleanup supervisor_pilot 248282 295523
[2025-07-03 14:35:51] 2025-07-03 18:35:51,125 [wrapper] Test setup, not cleaning
[2025-07-03 14:35:51] 2025-07-03 18:35:51,129 [wrapper] apfmon messages muted
[2025-07-03 14:35:51] 2025-07-03 18:35:51,132 [wrapper] ==== wrapper stdout END ====
[2025-07-03 14:35:51] 2025-07-03 18:35:51,136 [wrapper] ==== wrapper stderr END ====
[2025-07-03 14:35:51]  *** Error codes and diagnostics ***
[2025-07-03 14:35:51]     "exeErrorCode": 0,
[2025-07-03 14:35:51]     "exeErrorDiag": "",
[2025-07-03 14:35:51]     "pilotErrorCode": 0,
[2025-07-03 14:35:51]     "pilotErrorDiag": "",
[2025-07-03 14:35:51]  *** Listing of results directory ***
[2025-07-03 14:35:51] total 748516
[2025-07-03 14:35:51] drwx------ 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas    530466 Jul  2 23:39 pilot3.tar.gz
[2025-07-03 14:35:51] -rwx------ 1 boincer umatlas     36292 Jul  2 23:52 runpilot2-wrapper.sh
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas      5112 Jul  2 23:52 queuedata.json
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas       100 Jul  2 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-03 14:35:51] -rwxr-xr-x 1 boincer umatlas      7986 Jul  2 23:54 run_atlas
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas       105 Jul  2 23:54 job.xml
[2025-07-03 14:35:51] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 EVNT.45436099._000005.pool.root.1
[2025-07-03 14:35:51] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 ATLAS.root_0
[2025-07-03 14:35:51] -rw-r--r-- 2 boincer umatlas     15095 Jul  2 23:54 start_atlas.sh
[2025-07-03 14:35:51] drwxrwx--x 2 boincer umatlas      4096 Jul  2 23:54 shared
[2025-07-03 14:35:51] -rw-r--r-- 2 boincer umatlas    542902 Jul  2 23:54 input.tar.gz
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas         0 Jul  2 23:54 boinc_lockfile
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas      2627 Jul  3 05:48 pandaJob.out
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas    969766 Jul  3 05:48 agis_schedconf.cvmfs.json
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas      6386 Jul  3 14:27 init_data.xml
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas 211276865 Jul  3 14:34 HITS.45436103._000115.pool.root.1
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas       533 Jul  3 14:34 boinc_task_state.xml
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas      1063 Jul  3 14:35 memory_monitor_summary.json
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas   1574083 Jul  3 14:35 agis_ddmendpoints.agis.ALL.json
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas    560992 Jul  3 14:35 log.45436103._000115.job.log.tgz.1
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas      7858 Jul  3 14:35 heartbeat.json
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas      8192 Jul  3 14:35 boinc_mmap_file
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas        29 Jul  3 14:35 wrapper_checkpoint.txt
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas       822 Jul  3 14:35 pilotlog.txt
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas        96 Jul  3 14:35 pilot_heartbeat.json
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas   2735998 Jul  3 14:35 log.45436103._000115.job.log.1
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas       357 Jul  3 14:35 output.list
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas       620 Jul  3 14:35 runtime_log
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas   3317760 Jul  3 14:35 result.tar.gz
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas      8756 Jul  3 14:35 runtime_log.err
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas       790 Jul  3 14:35 7W6NDmBBQr7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmS46KDmkD95Zn.diag
[2025-07-03 14:35:51] -rw-r--r-- 1 boincer umatlas     23143 Jul  3 14:35 stderr.txt
[2025-07-03 14:35:51] HITS file was successfully produced:
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas 211276865 Jul  3 14:34 shared/HITS.pool.root.1
[2025-07-03 14:35:51]  *** Contents of shared directory: ***
[2025-07-03 14:35:51] total 476120
[2025-07-03 14:35:51] -rw-r--r-- 3 boincer umatlas 272375840 Jul  2 23:54 ATLAS.root_0
[2025-07-03 14:35:51] -rw-r--r-- 2 boincer umatlas     15095 Jul  2 23:54 start_atlas.sh
[2025-07-03 14:35:51] -rw-r--r-- 2 boincer umatlas    542902 Jul  2 23:54 input.tar.gz
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas 211276865 Jul  3 14:34 HITS.pool.root.1
[2025-07-03 14:35:51] -rw------- 1 boincer umatlas   3317760 Jul  3 14:35 result.tar.gz
14:35:53 (273707): run_atlas exited; CPU time 126609.335983
14:35:53 (273707): called boinc_finish(0)

</stderr_txt>
]]>

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