Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:57:30 (26816): wrapper (7.7.26015): starting
22:57:30 (26816): wrapper: running run_atlas (--nthreads 12)
[2025-07-02 22:57:30] Arguments: --nthreads 12
[2025-07-02 22:57:30] Threads: 12
[2025-07-02 22:57:30] Checking for CVMFS
[2025-07-02 22:57:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-02 22:57:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-02 22:57:30] Running cvmfs_config stat atlas.cern.ch
[2025-07-02 22:57:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-02 22:57:30] 2.11.2.0 2914 76871 92884 147868 0 1 15590208 20275201 1 130560 0 26933156 99.965 8594321 9701 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-02 22:57:30] CVMFS is ok
[2025-07-02 22:57:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-02 22:57:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-02 22:57:30] Further information can be found at the LHC@home message board.
[2025-07-02 22:57:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-02 22:57:30] Checking for apptainer binary...
[2025-07-02 22:57:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-02 22:57:30] Running /usr/bin/apptainer --version
[2025-07-02 22:57:30] apptainer version 1.3.2-1.el7
[2025-07-02 22:57:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-02 22:57:32] c-205-5.aglt2.org
[2025-07-02 22:57:32] apptainer works
[2025-07-02 22:57:32] Set ATHENA_PROC_NUMBER=12
[2025-07-02 22:57:32] Set ATHENA_CORE_NUMBER=12
[2025-07-02 22:57:32] Starting ATLAS job with PandaID=6716545408
[2025-07-02 22:57:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-03 00:16:10]  *** The last 200 lines of the pilot log: ***
[2025-07-03 00:16:10]  is_tar=False
[2025-07-03 00:16:10]  lfn=log.45435955._000083.job.log.tgz.1
[2025-07-03 00:16:10]  mtime=0
[2025-07-03 00:16:10]  protocol_id=None
[2025-07-03 00:16:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-03 00:16:10]  replicas=None
[2025-07-03 00:16:10]  scope=mc23_13p6TeV
[2025-07-03 00:16:10]  status=None
[2025-07-03 00:16:10]  status_code=0
[2025-07-03 00:16:10]  storage_token=
[2025-07-03 00:16:10]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6716545408/log.45435955._000083.job.log.tgz.1
[2025-07-03 00:16:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/5c/log.45435955._000083.job.log.tgz.1
[2025-07-03 00:16:10]  workdir=None
[2025-07-03 00:16:10] ]
[2025-07-03 00:16:10] 2025-07-03 04:15:31,219 | INFO     | transferring file log.45435955._000083.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6716545408/log.45435955._000083.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-03 00:16:10] 2025-07-03 04:15:31,219 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6716545408/log.45435955._000083.job.log.tgz.1 /tmp/boinchome/slots/0/log.45435955._000083.job
[2025-07-03 00:16:10] 2025-07-03 04:15:31,241 | INFO     | adding to output.list: log.45435955._000083.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/5c/log.45435955._000083.job.log.tg
[2025-07-03 00:16:10] 2025-07-03 04:15:31,241 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-03 00:16:10] 2025-07-03 04:15:31,242 | INFO     | summary of transferred files:
[2025-07-03 00:16:10] 2025-07-03 04:15:31,242 | INFO     |  -- lfn=log.45435955._000083.job.log.tgz.1, status_code=0, status=transferred
[2025-07-03 00:16:10] 2025-07-03 04:15:31,242 | INFO     | stage-out finished correctly
[2025-07-03 00:16:10] 2025-07-03 04:15:31,498 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-03 00:16:10] 2025-07-03 04:15:32,369 | INFO     | monitor loop #350: job 0:6716545408 is in state 'finished'
[2025-07-03 00:16:10] 2025-07-03 04:15:32,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-03 00:16:10] 2025-07-03 04:15:33,392 | INFO     | job 6716545408 has state=finished
[2025-07-03 00:16:10] 2025-07-03 04:15:33,392 | INFO     | preparing for final server update for job 6716545408 in state='finished'
[2025-07-03 00:16:10] 2025-07-03 04:15:33,393 | INFO     | this job has now completed (state=finished)
[2025-07-03 00:16:10] 2025-07-03 04:15:33,393 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-03 00:16:10] 2025-07-03 04:15:33,393 | INFO     | log transfer has been attempted: DONE
[2025-07-03 00:16:10] 2025-07-03 04:15:33,393 | INFO     | job 6716545408 has finished - writing final server update
[2025-07-03 00:16:10] 2025-07-03 04:15:33,394 | INFO     | total number of processed events: 400 (read)
[2025-07-03 00:16:10] 2025-07-03 04:15:33,395 | INFO     | executing command: lscpu
[2025-07-03 00:16:10] 2025-07-03 04:15:33,417 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-03 00:16:10] 2025-07-03 04:15:34,872 | INFO     | monitor loop #351: job 0:6716545408 is in state 'finished'
[2025-07-03 00:16:10] 2025-07-03 04:15:34,872 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-03 00:16:10] 2025-07-03 04:15:37,396 | INFO     | monitor loop #352: job 0:6716545408 is in state 'finished'
[2025-07-03 00:16:10] 2025-07-03 04:15:37,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-03 00:16:10] 2025-07-03 04:15:38,207 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-03 00:16:10] 2025-07-03 04:15:38,211 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-07-03 00:16:10] 2025-07-03 04:15:38,214 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6716545408/memory_monitor_summary.json (trf name=prmon)
[2025-07-03 00:16:10] 2025-07-03 04:15:38,215 | INFO     | extracted standard info from prmon json
[2025-07-03 00:16:10] 2025-07-03 04:15:38,215 | INFO     | extracted standard memory fields from prmon json
[2025-07-03 00:16:10] 2025-07-03 04:15:38,215 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-03 00:16:10] 2025-07-03 04:15:38,216 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-03 00:16:10] 2025-07-03 04:15:38,216 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-03 00:16:10] 2025-07-03 04:15:38,218 | INFO     | fitting pss+swap vs Time
[2025-07-03 00:16:10] 2025-07-03 04:15:38,218 | INFO     | sum of square deviations: 101843770.0
[2025-07-03 00:16:10] 2025-07-03 04:15:38,219 | INFO     | sum of deviations: -1639826399.9999998
[2025-07-03 00:16:10] 2025-07-03 04:15:38,219 | INFO     | mean x: 1751513877.0
[2025-07-03 00:16:10] 2025-07-03 04:15:38,219 | INFO     | mean y: 2717378.3913043477
[2025-07-03 00:16:10] 2025-07-03 04:15:38,219 | INFO     | -- intersect: 28204527812.853348
[2025-07-03 00:16:10] 2025-07-03 04:15:38,219 | INFO     | intersect: 28204527812.853348
[2025-07-03 00:16:10] 2025-07-03 04:15:38,219 | INFO     | chi2: 0.07631902798233024
[2025-07-03 00:16:10] 2025-07-03 04:15:38,220 | INFO     | -- intersect: 28204527812.853348
[2025-07-03 00:16:10] 2025-07-03 04:15:38,220 | INFO     | current memory leak: -16.10 B/s (using 69 data points, chi2=0.08)
[2025-07-03 00:16:10] 2025-07-03 04:15:38,220 | INFO     | could have reported an average CPU frequency of 2032 MHz (6 samples)
[2025-07-03 00:16:10] 2025-07-03 04:15:38,220 | INFO     | ..............................
[2025-07-03 00:16:10] 2025-07-03 04:15:38,220 | INFO     | . Timing measurements:
[2025-07-03 00:16:10] 2025-07-03 04:15:38,220 | INFO     | . get job = 0 s
[2025-07-03 00:16:10] 2025-07-03 04:15:38,220 | INFO     | . initial setup = 2 s
[2025-07-03 00:16:10] 2025-07-03 04:15:38,220 | INFO     | . payload setup = 10 s
[2025-07-03 00:16:10] 2025-07-03 04:15:38,221 | INFO     | . stage-in = 0 s
[2025-07-03 00:16:10] 2025-07-03 04:15:38,221 | INFO     | . payload execution = 4634 s
[2025-07-03 00:16:10] 2025-07-03 04:15:38,221 | INFO     | . stage-out = 0 s
[2025-07-03 00:16:10] 2025-07-03 04:15:38,221 | INFO     | . log creation = 0 s
[2025-07-03 00:16:10] 2025-07-03 04:15:38,221 | INFO     | ..............................
[2025-07-03 00:16:10] 2025-07-03 04:15:38,302 | INFO     | 
[2025-07-03 00:16:10] 2025-07-03 04:15:38,303 | INFO     | job summary report
[2025-07-03 00:16:10] 2025-07-03 04:15:38,303 | INFO     | --------------------------------------------------
[2025-07-03 00:16:10] 2025-07-03 04:15:38,303 | INFO     | PanDA job id: 6716545408
[2025-07-03 00:16:10] 2025-07-03 04:15:38,303 | INFO     | task id: 45435955
[2025-07-03 00:16:10] 2025-07-03 04:15:38,303 | INFO     | errors: (none)
[2025-07-03 00:16:10] 2025-07-03 04:15:38,304 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-03 00:16:10] 2025-07-03 04:15:38,304 | INFO     | pilot state: finished 
[2025-07-03 00:16:10] 2025-07-03 04:15:38,304 | INFO     | transexitcode: 0
[2025-07-03 00:16:10] 2025-07-03 04:15:38,304 | INFO     | exeerrorcode: 0
[2025-07-03 00:16:10] 2025-07-03 04:15:38,304 | INFO     | exeerrordiag: 
[2025-07-03 00:16:10] 2025-07-03 04:15:38,304 | INFO     | exitcode: 0
[2025-07-03 00:16:10] 2025-07-03 04:15:38,305 | INFO     | exitmsg: OK
[2025-07-03 00:16:10] 2025-07-03 04:15:38,305 | INFO     | cpuconsumptiontime: 48690 s
[2025-07-03 00:16:10] 2025-07-03 04:15:38,305 | INFO     | nevents: 400
[2025-07-03 00:16:10] 2025-07-03 04:15:38,305 | INFO     | neventsw: 0
[2025-07-03 00:16:10] 2025-07-03 04:15:38,305 | INFO     | pid: 4690
[2025-07-03 00:16:10] 2025-07-03 04:15:38,305 | INFO     | pgrp: 4690
[2025-07-03 00:16:10] 2025-07-03 04:15:38,305 | INFO     | corecount: 12
[2025-07-03 00:16:10] 2025-07-03 04:15:38,306 | INFO     | event service: False
[2025-07-03 00:16:10] 2025-07-03 04:15:38,306 | INFO     | sizes: {0: 2366643, 5: 2366905, 11: 2366961, 4647: 2393097, 4648: 2402150, 4649: 2402150, 4655: 2402472}
[2025-07-03 00:16:10] 2025-07-03 04:15:38,306 | INFO     | --------------------------------------------------
[2025-07-03 00:16:10] 2025-07-03 04:15:38,306 | INFO     | 
[2025-07-03 00:16:10] 2025-07-03 04:15:38,306 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-03 00:16:10] 2025-07-03 04:15:38,332 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,332 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,332 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,332 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,333 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,333 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,333 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,333 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,333 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,333 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,334 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,334 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,334 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,334 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,334 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,334 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,335 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,335 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-03 00:16:10] 2025-07-03 04:15:38,335 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,335 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-03 00:16:10] 2025-07-03 04:15:38,335 | INFO     | job 6716545408 has completed (purged errors)
[2025-07-03 00:16:10] 2025-07-03 04:15:38,336 | INFO     | overall cleanup function is called
[2025-07-03 00:16:10] 2025-07-03 04:15:39,342 | INFO     | --- collectZombieJob: --- 10, [4690]
[2025-07-03 00:16:10] 2025-07-03 04:15:39,342 | INFO     | zombie collector waiting for pid 4690
[2025-07-03 00:16:10] 2025-07-03 04:15:39,343 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-03 00:16:10] 2025-07-03 04:15:39,343 | INFO     | collected zombie processes
[2025-07-03 00:16:10] 2025-07-03 04:15:39,343 | INFO     | will attempt to kill all subprocesses of pid=4690
[2025-07-03 00:16:10] 2025-07-03 04:15:39,431 | INFO     | process IDs to be killed: [4690] (in reverse order)
[2025-07-03 00:16:10] 2025-07-03 04:15:39,480 | WARNING  | found no corresponding commands to process id(s)
[2025-07-03 00:16:10] 2025-07-03 04:15:39,480 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-03 00:16:10] 2025-07-03 04:15:39,484 | INFO     | did not find any defunct processes belonging to 4690
[2025-07-03 00:16:10] 2025-07-03 04:15:39,487 | INFO     | did not find any defunct processes belonging to 4690
[2025-07-03 00:16:10] 2025-07-03 04:15:39,487 | INFO     | ready for new job
[2025-07-03 00:16:10] 2025-07-03 04:15:39,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-03 00:16:10] 2025-07-03 04:15:39,489 | INFO     | ***************************************
[2025-07-03 00:16:10] 2025-07-03 04:15:39,489 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-03 00:16:10] 2025-07-03 04:15:39,489 | INFO     | ***************************************
[2025-07-03 00:16:10] 2025-07-03 04:15:39,489 | INFO     | 
[2025-07-03 00:16:10] 2025-07-03 04:15:39,489 | INFO     | architecture information:
[2025-07-03 00:16:10] 2025-07-03 04:15:39,490 | INFO     | executing command: cat /etc/os-release
[2025-07-03 00:16:10] 2025-07-03 04:15:39,504 | INFO     | cat /etc/os-release:
[2025-07-03 00:16:10] NAME="CentOS Linux"
[2025-07-03 00:16:10] VERSION="7 (Core)"
[2025-07-03 00:16:10] ID="centos"
[2025-07-03 00:16:10] ID_LIKE="rhel fedora"
[2025-07-03 00:16:10] VERSION_ID="7"
[2025-07-03 00:16:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-03 00:16:10] ANSI_COLOR="0;31"
[2025-07-03 00:16:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-03 00:16:10] HOME_URL="https://www.centos.org/"
[2025-07-03 00:16:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-03 00:16:10] 
[2025-07-03 00:16:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-03 00:16:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-03 00:16:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-03 00:16:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-03 00:16:10] 
[2025-07-03 00:16:10] 2025-07-03 04:15:39,504 | INFO     | ***************************************
[2025-07-03 00:16:10] 2025-07-03 04:15:40,007 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-03 00:16:10] 2025-07-03 04:15:40,024 | INFO     | sufficient remaining disk space (29299310592 B)
[2025-07-03 00:16:10] 2025-07-03 04:15:40,024 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-03 00:16:10] 2025-07-03 04:15:40,024 | INFO     | current server update state: UPDATING_FINAL
[2025-07-03 00:16:10] 2025-07-03 04:15:40,024 | INFO     | update_server=False
[2025-07-03 00:16:10] 2025-07-03 04:15:40,024 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-03 00:16:10] 2025-07-03 04:15:40,025 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-03 00:16:10] 2025-07-03 04:15:40,025 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-03 00:16:10] 2025-07-03 04:15:40,716 | INFO     | all data control threads have been joined
[2025-07-03 00:16:10] 2025-07-03 04:15:40,900 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-03 00:16:10] 2025-07-03 04:15:40,900 | INFO     | aborting loop
[2025-07-03 00:16:10] 2025-07-03 04:15:40,965 | INFO     | all payload control threads have been joined
[2025-07-03 00:16:10] 2025-07-03 04:15:41,027 | INFO     | [job] retrieve thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:41,030 | INFO     | [job] queue monitor thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:41,071 | INFO     | all job control threads have been joined
[2025-07-03 00:16:10] 2025-07-03 04:15:41,128 | INFO     | [payload] validate_post thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:41,133 | INFO     | [job] create_data_payload thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:41,272 | INFO     | [payload] validate_pre thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:41,436 | INFO     | [data] copytool_in thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:41,722 | INFO     | [data] control thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:41,889 | INFO     | [payload] execute_payloads thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:41,906 | INFO     | [job] job monitor thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:41,971 | INFO     | [payload] control thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:42,012 | INFO     | [job] validate thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:42,031 | INFO     | [data] copytool_out thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:42,076 | INFO     | [job] control thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:42,088 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-03 00:16:10] 2025-07-03 04:15:42,162 | INFO     | [payload] failed_post thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:46,094 | INFO     | [data] queue_monitor thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:50,205 | INFO     | job.realtimelogging is not enabled
[2025-07-03 00:16:10] 2025-07-03 04:15:51,207 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-03 00:16:10] 2025-07-03 04:15:52,982 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140558042744640)>', '<ExcThread(monitor, started 140557603026688)>']
[2025-07-03 00:16:10] 2025-07-03 04:15:58,008 | INFO     | all workflow threads have been joined
[2025-07-03 00:16:10] 2025-07-03 04:15:58,008 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-03 00:16:10] 2025-07-03 04:15:58,016 | INFO     | traces error code: 0
[2025-07-03 00:16:10] 2025-07-03 04:15:58,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-03 00:16:10] 2025-07-03 04:16:10,105 | INFO     | PID=30497 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-03 00:16:10] 2025-07-03 04:16:10,106 | INFO     | found 0 job(s) in 20 queues
[2025-07-03 00:16:10] 2025-07-03 04:16:10,106 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-03 00:16:10] 2025-07-03 04:16:10,106 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-03 00:16:10] 2025-07-03 04:16:10,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-03 00:16:10] 2025-07-03 04:16:10,106 | INFO     | [monitor] control thread has ended
[2025-07-03 00:16:10] 2025-07-03 04:16:10,201 [wrapper] ==== pilot stdout END ====
[2025-07-03 00:16:10] 2025-07-03 04:16:10,204 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-03 00:16:10] 2025-07-03 04:16:10,209 [wrapper] pilotpid: 30497
[2025-07-03 00:16:10] 2025-07-03 04:16:10,212 [wrapper] Pilot exit status: 0
[2025-07-03 00:16:10] 2025-07-03 04:16:10,228 [wrapper] pandaids: 6716545408
[2025-07-03 00:16:10] 2025-07-03 04:16:10,268 [wrapper] cleanup supervisor_pilot 18834 30498
[2025-07-03 00:16:10] 2025-07-03 04:16:10,272 [wrapper] Test setup, not cleaning
[2025-07-03 00:16:10] 2025-07-03 04:16:10,276 [wrapper] apfmon messages muted
[2025-07-03 00:16:10] 2025-07-03 04:16:10,281 [wrapper] ==== wrapper stdout END ====
[2025-07-03 00:16:10] 2025-07-03 04:16:10,284 [wrapper] ==== wrapper stderr END ====
[2025-07-03 00:16:10]  *** Error codes and diagnostics ***
[2025-07-03 00:16:10]     "exeErrorCode": 0,
[2025-07-03 00:16:10]     "exeErrorDiag": "",
[2025-07-03 00:16:10]     "pilotErrorCode": 0,
[2025-07-03 00:16:10]     "pilotErrorDiag": "",
[2025-07-03 00:16:10]  *** Listing of results directory ***
[2025-07-03 00:16:10] total 446004
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas    530466 Jul  1 12:59 pilot3.tar.gz
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas      5112 Jul  1 13:18 queuedata.json
[2025-07-03 00:16:10] -rwx------ 1 boincer umatlas     36292 Jul  1 13:19 runpilot2-wrapper.sh
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas       100 Jul  2 22:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-03 00:16:10] -rwxr-xr-x 1 boincer umatlas      7986 Jul  2 22:57 run_atlas
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas       105 Jul  2 22:57 job.xml
[2025-07-03 00:16:10] -rw-r--r-- 2 boincer umatlas 270936813 Jul  2 22:57 EVNT.45435951._000004.pool.root.1
[2025-07-03 00:16:10] -rw-r--r-- 2 boincer umatlas     15095 Jul  2 22:57 start_atlas.sh
[2025-07-03 00:16:10] drwxrwx--x 2 boincer umatlas      4096 Jul  2 22:57 shared
[2025-07-03 00:16:10] -rw-r--r-- 2 boincer umatlas    542892 Jul  2 22:57 input.tar.gz
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas         0 Jul  2 22:57 boinc_lockfile
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas      2593 Jul  2 22:57 pandaJob.out
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas    969738 Jul  2 22:57 agis_schedconf.cvmfs.json
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas   1574086 Jul  2 22:57 agis_ddmendpoints.agis.ALL.json
[2025-07-03 00:16:10] drwx------ 4 boincer umatlas      4096 Jul  2 22:57 pilot3
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas      5867 Jul  3 00:10 init_data.xml
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas 180326398 Jul  3 00:15 HITS.45435955._000083.pool.root.1
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas      1045 Jul  3 00:15 memory_monitor_summary.json
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas    356908 Jul  3 00:15 log.45435955._000083.job.log.tgz.1
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas       529 Jul  3 00:15 boinc_task_state.xml
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas      7836 Jul  3 00:15 heartbeat.json
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas      8192 Jul  3 00:16 boinc_mmap_file
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas        27 Jul  3 00:16 wrapper_checkpoint.txt
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas        95 Jul  3 00:16 pilot_heartbeat.json
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas       745 Jul  3 00:16 pilotlog.txt
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas    447082 Jul  3 00:16 log.45435955._000083.job.log.1
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas       357 Jul  3 00:16 output.list
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas       620 Jul  3 00:16 runtime_log
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas    819200 Jul  3 00:16 result.tar.gz
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas      8657 Jul  3 00:16 runtime_log.err
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas       658 Jul  3 00:16 GSaNDmwotq7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8N6KDmxGCVRo.diag
[2025-07-03 00:16:10] -rw-r--r-- 1 boincer umatlas     21557 Jul  3 00:16 stderr.txt
[2025-07-03 00:16:10] HITS file was successfully produced:
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas 180326398 Jul  3 00:15 shared/HITS.pool.root.1
[2025-07-03 00:16:10]  *** Contents of shared directory: ***
[2025-07-03 00:16:10] total 442036
[2025-07-03 00:16:10] -rw-r--r-- 2 boincer umatlas 270936813 Jul  2 22:57 ATLAS.root_0
[2025-07-03 00:16:10] -rw-r--r-- 2 boincer umatlas     15095 Jul  2 22:57 start_atlas.sh
[2025-07-03 00:16:10] -rw-r--r-- 2 boincer umatlas    542892 Jul  2 22:57 input.tar.gz
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas 180326398 Jul  3 00:15 HITS.pool.root.1
[2025-07-03 00:16:10] -rw------- 1 boincer umatlas    819200 Jul  3 00:16 result.tar.gz
00:16:11 (26816): run_atlas exited; CPU time 48661.287211
00:16:11 (26816): called boinc_finish(0)

</stderr_txt>
]]>

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