Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:37:24 (73604): wrapper (7.7.26015): starting
16:37:24 (73604): wrapper: running run_atlas (--nthreads 8)
[2025-07-01 16:37:24] Arguments: --nthreads 8
[2025-07-01 16:37:24] Threads: 8
[2025-07-01 16:37:24] Checking for CVMFS
[2025-07-01 16:37:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-01 16:37:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-01 16:37:24] Running cvmfs_config stat atlas.cern.ch
[2025-07-01 16:37:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-01 16:37:25] 2.11.2.0 300311 11871 145932 147820 0 540 11386652 18432001 18695 130560 0 48640734 99.441 80080186 61316 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-01 16:37:25] CVMFS is ok
[2025-07-01 16:37:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-01 16:37:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-01 16:37:25] Further information can be found at the LHC@home message board.
[2025-07-01 16:37:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-01 16:37:25] Checking for apptainer binary...
[2025-07-01 16:37:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-01 16:37:25] Running /usr/bin/apptainer --version
[2025-07-01 16:37:25] apptainer version 1.3.2-1.el7
[2025-07-01 16:37:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-01 16:37:26] c-211-35-2.aglt2.org
[2025-07-01 16:37:26] apptainer works
[2025-07-01 16:37:26] Set ATHENA_PROC_NUMBER=8
[2025-07-01 16:37:26] Set ATHENA_CORE_NUMBER=8
[2025-07-01 16:37:26] Starting ATLAS job with PandaID=6716781137
[2025-07-01 16:37:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:00:02 (73604): BOINC client no longer exists - exiting
21:00:02 (73604): timer handler: client dead, exiting
21:00:23 (148945): wrapper (7.7.26015): starting
21:00:23 (148945): wrapper: running run_atlas (--nthreads 8)
[2025-07-01 21:00:23] Arguments: --nthreads 8
[2025-07-01 21:00:23] Threads: 8
[2025-07-01 21:00:23] This job has been restarted, cleaning up previous attempt
[2025-07-01 21:00:23] Checking for CVMFS
[2025-07-01 21:00:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-01 21:00:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-01 21:00:24] Running cvmfs_config stat atlas.cern.ch
[2025-07-01 21:00:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-01 21:00:24] 2.11.2.0 300311 12134 127972 147826 1 257 11617260 18432001 14483 130560 0 50378962 99.460 80155309 61270 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-01 21:00:24] CVMFS is ok
[2025-07-01 21:00:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-01 21:00:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-01 21:00:24] Further information can be found at the LHC@home message board.
[2025-07-01 21:00:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-01 21:00:24] Checking for apptainer binary...
[2025-07-01 21:00:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-01 21:00:24] Running /usr/bin/apptainer --version
[2025-07-01 21:00:24] apptainer version 1.3.2-1.el7
[2025-07-01 21:00:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-01 21:00:26] c-211-35-2.aglt2.org
[2025-07-01 21:00:26] apptainer works
[2025-07-01 21:00:26] Set ATHENA_PROC_NUMBER=8
[2025-07-01 21:00:26] Set ATHENA_CORE_NUMBER=8
[2025-07-01 21:00:26] Starting ATLAS job with PandaID=6716781137
[2025-07-01 21:00:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-02 02:38:11]  *** The last 200 lines of the pilot log: ***
[2025-07-02 02:38:11] 2025-07-02 06:37:38,224 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-02 02:38:11] 2025-07-02 06:37:38,224 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-02 02:38:11] 2025-07-02 06:37:38,231 | INFO     | fitting pss+swap vs Time
[2025-07-02 02:38:11] 2025-07-02 06:37:38,232 | INFO     | sum of square deviations: 11244987789.8067
[2025-07-02 02:38:11] 2025-07-02 06:37:38,235 | INFO     | sum of deviations: 62308498396.65555
[2025-07-02 02:38:11] 2025-07-02 06:37:38,235 | INFO     | mean x: 1751428141.0241692
[2025-07-02 02:38:11] 2025-07-02 06:37:38,235 | INFO     | mean y: 2468431.2930513597
[2025-07-02 02:38:11] 2025-07-02 06:37:38,236 | INFO     | -- intersect: -9702198177.218914
[2025-07-02 02:38:11] 2025-07-02 06:37:38,236 | INFO     | intersect: -9702198177.218914
[2025-07-02 02:38:11] 2025-07-02 06:37:38,236 | INFO     | chi2: 2.4206064689835363
[2025-07-02 02:38:11] 2025-07-02 06:37:38,237 | INFO     | sum of square deviations: 10743055237.303593
[2025-07-02 02:38:11] 2025-07-02 06:37:38,240 | INFO     | sum of deviations: 83181714560.05215
[2025-07-02 02:38:11] 2025-07-02 06:37:38,240 | INFO     | mean x: 1751427988.52454
[2025-07-02 02:38:11] 2025-07-02 06:37:38,240 | INFO     | mean y: 2474691.180981595
[2025-07-02 02:38:11] 2025-07-02 06:37:38,240 | INFO     | -- intersect: -13558544943.9094
[2025-07-02 02:38:11] 2025-07-02 06:37:38,240 | INFO     | intersect: -13558544943.9094
[2025-07-02 02:38:11] 2025-07-02 06:37:38,241 | INFO     | chi2: 1.6378376656948108
[2025-07-02 02:38:11] 2025-07-02 06:37:38,241 | INFO     | current chi2=1.6378376656948108 (change=32.337714259576714 %)
[2025-07-02 02:38:11] 2025-07-02 06:37:38,242 | INFO     | sum of square deviations: 10256285759.800621
[2025-07-02 02:38:11] 2025-07-02 06:37:38,244 | INFO     | sum of deviations: 81755413785.71037
[2025-07-02 02:38:11] 2025-07-02 06:37:38,245 | INFO     | mean x: 1751427836.0249221
[2025-07-02 02:38:11] 2025-07-02 06:37:38,245 | INFO     | mean y: 2474244.4112149533
[2025-07-02 02:38:11] 2025-07-02 06:37:38,245 | INFO     | -- intersect: -13958594197.271162
[2025-07-02 02:38:11] 2025-07-02 06:37:38,245 | INFO     | intersect: -13958594197.271162
[2025-07-02 02:38:11] 2025-07-02 06:37:38,246 | INFO     | chi2: 1.637726980669587
[2025-07-02 02:38:11] 2025-07-02 06:37:38,246 | INFO     | current chi2=1.637726980669587 (change=0.006757997299857918 %)
[2025-07-02 02:38:11] 2025-07-02 06:37:38,246 | INFO     | right removable region: 320
[2025-07-02 02:38:11] 2025-07-02 06:37:38,246 | INFO     | sum of square deviations: 10743050357.303593
[2025-07-02 02:38:11] 2025-07-02 06:37:38,249 | INFO     | sum of deviations: 5287031929.941719
[2025-07-02 02:38:11] 2025-07-02 06:37:38,249 | INFO     | mean x: 1751428293.52454
[2025-07-02 02:38:11] 2025-07-02 06:37:38,250 | INFO     | mean y: 2485658.444785276
[2025-07-02 02:38:11] 2025-07-02 06:37:38,250 | INFO     | -- intersect: -859453642.116375
[2025-07-02 02:38:11] 2025-07-02 06:37:38,250 | INFO     | intersect: -859453642.116375
[2025-07-02 02:38:11] 2025-07-02 06:37:38,250 | INFO     | chi2: 0.8630661961092364
[2025-07-02 02:38:11] 2025-07-02 06:37:38,250 | INFO     | current chi2=0.8630661961092364 (change=64.34504298124692 %)
[2025-07-02 02:38:11] 2025-07-02 06:37:38,251 | INFO     | sum of square deviations: 10256275999.800621
[2025-07-02 02:38:11] 2025-07-02 06:37:38,254 | INFO     | sum of deviations: -8233771220.376953
[2025-07-02 02:38:11] 2025-07-02 06:37:38,254 | INFO     | mean x: 1751428446.0249221
[2025-07-02 02:38:11] 2025-07-02 06:37:38,254 | INFO     | mean y: 2489883.92211838
[2025-07-02 02:38:11] 2025-07-02 06:37:38,255 | INFO     | -- intersect: 1408542249.6842985
[2025-07-02 02:38:11] 2025-07-02 06:37:38,255 | INFO     | intersect: 1408542249.6842985
[2025-07-02 02:38:11] 2025-07-02 06:37:38,255 | INFO     | chi2: 0.7971931128075573
[2025-07-02 02:38:11] 2025-07-02 06:37:38,255 | INFO     | current chi2=0.7971931128075573 (change=7.632448542028364 %)
[2025-07-02 02:38:11] 2025-07-02 06:37:38,255 | INFO     | left removable region: 20
[2025-07-02 02:38:11] 2025-07-02 06:37:38,256 | INFO     | sum of square deviations: 8372166742.786679
[2025-07-02 02:38:11] 2025-07-02 06:37:38,258 | INFO     | sum of deviations: 9478795047.239998
[2025-07-02 02:38:11] 2025-07-02 06:37:38,259 | INFO     | mean x: 1751428415.5266666
[2025-07-02 02:38:11] 2025-07-02 06:37:38,259 | INFO     | mean y: 2497685.72
[2025-07-02 02:38:11] 2025-07-02 06:37:38,259 | INFO     | -- intersect: -1980433555.4659312
[2025-07-02 02:38:11] 2025-07-02 06:37:38,259 | INFO     | intersect: -1980433555.4659312
[2025-07-02 02:38:11] 2025-07-02 06:37:38,259 | INFO     | chi2: 0.0006672672662979955
[2025-07-02 02:38:11] 2025-07-02 06:37:38,260 | INFO     | -- intersect: -1980433555.4659312
[2025-07-02 02:38:11] 2025-07-02 06:37:38,260 | INFO     | current memory leak: 1.13 B/s (using 300 data points, chi2=0.00)
[2025-07-02 02:38:11] 2025-07-02 06:37:38,260 | INFO     | could have reported an average CPU frequency of 2616 MHz (15 samples)
[2025-07-02 02:38:11] 2025-07-02 06:37:38,261 | INFO     | ..............................
[2025-07-02 02:38:11] 2025-07-02 06:37:38,261 | INFO     | . Timing measurements:
[2025-07-02 02:38:11] 2025-07-02 06:37:38,261 | INFO     | . get job = 0 s
[2025-07-02 02:38:11] 2025-07-02 06:37:38,261 | INFO     | . initial setup = 2 s
[2025-07-02 02:38:11] 2025-07-02 06:37:38,261 | INFO     | . payload setup = 9 s
[2025-07-02 02:38:11] 2025-07-02 06:37:38,262 | INFO     | . stage-in = 0 s
[2025-07-02 02:38:11] 2025-07-02 06:37:38,262 | INFO     | . payload execution = 20169 s
[2025-07-02 02:38:11] 2025-07-02 06:37:38,262 | INFO     | . stage-out = 3 s
[2025-07-02 02:38:11] 2025-07-02 06:37:38,262 | INFO     | . log creation = 0 s
[2025-07-02 02:38:11] 2025-07-02 06:37:38,262 | INFO     | ..............................
[2025-07-02 02:38:11] 2025-07-02 06:37:38,395 | INFO     | 
[2025-07-02 02:38:11] 2025-07-02 06:37:38,395 | INFO     | job summary report
[2025-07-02 02:38:11] 2025-07-02 06:37:38,396 | INFO     | --------------------------------------------------
[2025-07-02 02:38:11] 2025-07-02 06:37:38,396 | INFO     | PanDA job id: 6716781137
[2025-07-02 02:38:11] 2025-07-02 06:37:38,396 | INFO     | task id: 45435717
[2025-07-02 02:38:11] 2025-07-02 06:37:38,396 | INFO     | errors: (none)
[2025-07-02 02:38:11] 2025-07-02 06:37:38,396 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-02 02:38:11] 2025-07-02 06:37:38,396 | INFO     | pilot state: finished 
[2025-07-02 02:38:11] 2025-07-02 06:37:38,396 | INFO     | transexitcode: 0
[2025-07-02 02:38:11] 2025-07-02 06:37:38,396 | INFO     | exeerrorcode: 0
[2025-07-02 02:38:11] 2025-07-02 06:37:38,396 | INFO     | exeerrordiag: 
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | exitcode: 0
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | exitmsg: OK
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | cpuconsumptiontime: 90504 s
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | nevents: 400
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | neventsw: 0
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | pid: 210196
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | pgrp: 210196
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | corecount: 8
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | event service: False
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | sizes: {0: 2365832, 1: 2366688, 7: 2366950, 12: 2366978, 20182: 2400318, 20186: 2409316, 20187: 2409500, 20200: 2409694}
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | --------------------------------------------------
[2025-07-02 02:38:11] 2025-07-02 06:37:38,397 | INFO     | 
[2025-07-02 02:38:11] 2025-07-02 06:37:38,398 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-02 02:38:11] 2025-07-02 06:37:38,438 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,438 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,438 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,438 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,438 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,438 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,439 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,439 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,439 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,439 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,439 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,439 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,439 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,439 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,439 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,439 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,439 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,440 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-02 02:38:11] 2025-07-02 06:37:38,440 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,440 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-02 02:38:11] 2025-07-02 06:37:38,440 | INFO     | job 6716781137 has completed (purged errors)
[2025-07-02 02:38:11] 2025-07-02 06:37:38,440 | INFO     | overall cleanup function is called
[2025-07-02 02:38:11] 2025-07-02 06:37:39,450 | INFO     | --- collectZombieJob: --- 10, [210196]
[2025-07-02 02:38:11] 2025-07-02 06:37:39,450 | INFO     | zombie collector waiting for pid 210196
[2025-07-02 02:38:11] 2025-07-02 06:37:39,450 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-02 02:38:11] 2025-07-02 06:37:39,450 | INFO     | collected zombie processes
[2025-07-02 02:38:11] 2025-07-02 06:37:39,450 | INFO     | will attempt to kill all subprocesses of pid=210196
[2025-07-02 02:38:11] 2025-07-02 06:37:39,671 | INFO     | process IDs to be killed: [210196] (in reverse order)
[2025-07-02 02:38:11] 2025-07-02 06:37:39,784 | WARNING  | found no corresponding commands to process id(s)
[2025-07-02 02:38:11] 2025-07-02 06:37:39,785 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-02 02:38:11] 2025-07-02 06:37:39,798 | INFO     | did not find any defunct processes belonging to 210196
[2025-07-02 02:38:11] 2025-07-02 06:37:39,810 | INFO     | did not find any defunct processes belonging to 210196
[2025-07-02 02:38:11] 2025-07-02 06:37:39,810 | INFO     | ready for new job
[2025-07-02 02:38:11] 2025-07-02 06:37:39,811 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-02 02:38:11] 2025-07-02 06:37:39,813 | INFO     | ***************************************
[2025-07-02 02:38:11] 2025-07-02 06:37:39,813 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-02 02:38:11] 2025-07-02 06:37:39,813 | INFO     | ***************************************
[2025-07-02 02:38:11] 2025-07-02 06:37:39,813 | INFO     | 
[2025-07-02 02:38:11] 2025-07-02 06:37:39,819 | INFO     | architecture information:
[2025-07-02 02:38:11] 2025-07-02 06:37:39,820 | INFO     | executing command: cat /etc/os-release
[2025-07-02 02:38:11] 2025-07-02 06:37:39,849 | INFO     | cat /etc/os-release:
[2025-07-02 02:38:11] NAME="CentOS Linux"
[2025-07-02 02:38:11] VERSION="7 (Core)"
[2025-07-02 02:38:11] ID="centos"
[2025-07-02 02:38:11] ID_LIKE="rhel fedora"
[2025-07-02 02:38:11] VERSION_ID="7"
[2025-07-02 02:38:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-02 02:38:11] ANSI_COLOR="0;31"
[2025-07-02 02:38:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-02 02:38:11] HOME_URL="https://www.centos.org/"
[2025-07-02 02:38:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-02 02:38:11] 
[2025-07-02 02:38:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-02 02:38:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-02 02:38:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-02 02:38:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-02 02:38:11] 
[2025-07-02 02:38:11] 2025-07-02 06:37:39,849 | INFO     | ***************************************
[2025-07-02 02:38:11] 2025-07-02 06:37:40,352 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-02 02:38:11] 2025-07-02 06:37:40,379 | INFO     | sufficient remaining disk space (103229161472 B)
[2025-07-02 02:38:11] 2025-07-02 06:37:40,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-02 02:38:11] 2025-07-02 06:37:40,380 | INFO     | current server update state: UPDATING_FINAL
[2025-07-02 02:38:11] 2025-07-02 06:37:40,380 | INFO     | update_server=False
[2025-07-02 02:38:11] 2025-07-02 06:37:40,380 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-02 02:38:11] 2025-07-02 06:37:40,380 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-02 02:38:11] 2025-07-02 06:37:40,381 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-02 02:38:11] 2025-07-02 06:37:40,470 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-02 02:38:11] 2025-07-02 06:37:40,471 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-02 02:38:11] 2025-07-02 06:37:40,471 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-02 02:38:11] 2025-07-02 06:37:40,471 | INFO     | will abort loop
[2025-07-02 02:38:11] 2025-07-02 06:37:40,499 | INFO     | all data control threads have been joined
[2025-07-02 02:38:11] 2025-07-02 06:37:40,555 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-02 02:38:11] 2025-07-02 06:37:40,731 | INFO     | all job control threads have been joined
[2025-07-02 02:38:11] 2025-07-02 06:37:41,387 | INFO     | [job] queue monitor thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:41,388 | INFO     | [job] retrieve thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:41,475 | INFO     | [job] job monitor thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:41,505 | INFO     | [data] control thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:41,527 | INFO     | [payload] validate_post thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:41,699 | INFO     | all payload control threads have been joined
[2025-07-02 02:38:11] 2025-07-02 06:37:41,713 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:41,737 | INFO     | [job] control thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:41,930 | INFO     | [payload] validate_pre thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:42,084 | INFO     | [payload] failed_post thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:42,366 | INFO     | [job] create_data_payload thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:42,388 | INFO     | [data] copytool_out thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:42,528 | INFO     | [payload] execute_payloads thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:42,536 | INFO     | [data] copytool_in thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:42,706 | INFO     | [payload] control thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:42,821 | INFO     | [job] validate thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:44,568 | INFO     | [data] queue_monitor thread has finished
[2025-07-02 02:38:11] 2025-07-02 06:37:45,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140170772916032)>', '<ExcThread(monitor, started 140170200340224)>']
[2025-07-02 02:38:11] 2025-07-02 06:37:50,424 | INFO     | all workflow threads have been joined
[2025-07-02 02:38:11] 2025-07-02 06:37:50,424 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-02 02:38:11] 2025-07-02 06:37:50,424 | INFO     | traces error code: 0
[2025-07-02 02:38:11] 2025-07-02 06:37:50,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-02 02:38:11] 2025-07-02 06:38:10,520 | INFO     | PID=170972 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-02 02:38:11] 2025-07-02 06:38:10,520 | INFO     | .. there are 17 such processes running
[2025-07-02 02:38:11] 2025-07-02 06:38:10,520 | INFO     | found 0 job(s) in 20 queues
[2025-07-02 02:38:11] 2025-07-02 06:38:10,520 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-02 02:38:11] 2025-07-02 06:38:10,520 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-02 02:38:11] 2025-07-02 06:38:10,520 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-02 02:38:11] 2025-07-02 06:38:10,520 | INFO     | [monitor] control thread has ended
[2025-07-02 02:38:11] 2025-07-02 06:38:10,727 [wrapper] ==== pilot stdout END ====
[2025-07-02 02:38:11] 2025-07-02 06:38:10,736 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-02 02:38:11] 2025-07-02 06:38:10,741 [wrapper] pilotpid: 170972
[2025-07-02 02:38:11] 2025-07-02 06:38:10,746 [wrapper] Pilot exit status: 0
[2025-07-02 02:38:11] 2025-07-02 06:38:10,764 [wrapper] pandaids: 6716781137 6716781137
[2025-07-02 02:38:11] 2025-07-02 06:38:10,851 [wrapper] cleanup supervisor_pilot 124722 170974
[2025-07-02 02:38:11] 2025-07-02 06:38:10,855 [wrapper] Test setup, not cleaning
[2025-07-02 02:38:11] 2025-07-02 06:38:10,858 [wrapper] apfmon messages muted
[2025-07-02 02:38:11] 2025-07-02 06:38:10,862 [wrapper] ==== wrapper stdout END ====
[2025-07-02 02:38:11] 2025-07-02 06:38:10,865 [wrapper] ==== wrapper stderr END ====
[2025-07-02 02:38:11]  *** Error codes and diagnostics ***
[2025-07-02 02:38:11]     "exeErrorCode": 0,
[2025-07-02 02:38:11]     "exeErrorDiag": "",
[2025-07-02 02:38:11]     "pilotErrorCode": 0,
[2025-07-02 02:38:11]     "pilotErrorDiag": "",
[2025-07-02 02:38:11]  *** Listing of results directory ***
[2025-07-02 02:38:11] total 741912
[2025-07-02 02:38:11] drwx------ 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas    530466 Jul  1 16:27 pilot3.tar.gz
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas      5112 Jul  1 16:36 queuedata.json
[2025-07-02 02:38:11] -rwx------ 1 boincer umatlas     36292 Jul  1 16:36 runpilot2-wrapper.sh
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas       100 Jul  1 16:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-02 02:38:11] -rwxr-xr-x 1 boincer umatlas      7986 Jul  1 16:37 run_atlas
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas       105 Jul  1 16:37 job.xml
[2025-07-02 02:38:11] -rw-r--r-- 3 boincer umatlas 275850769 Jul  1 16:37 EVNT.45435713._000003.pool.root.1
[2025-07-02 02:38:11] -rw-r--r-- 3 boincer umatlas 275850769 Jul  1 16:37 ATLAS.root_0
[2025-07-02 02:38:11] -rw-r--r-- 2 boincer umatlas     15095 Jul  1 16:37 start_atlas.sh
[2025-07-02 02:38:11] drwxrwx--x 2 boincer umatlas      4096 Jul  1 16:37 shared
[2025-07-02 02:38:11] -rw-r--r-- 2 boincer umatlas    542897 Jul  1 16:37 input.tar.gz
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas         0 Jul  1 16:37 boinc_lockfile
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas      2611 Jul  1 21:00 pandaJob.out
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas    969903 Jul  1 21:00 agis_schedconf.cvmfs.json
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas      6386 Jul  2 02:29 init_data.xml
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas       533 Jul  2 02:36 boinc_task_state.xml
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas 199579729 Jul  2 02:36 HITS.45435717._000024.pool.root.1
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas        95 Jul  2 02:37 pilot_heartbeat.json
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas      1063 Jul  2 02:37 memory_monitor_summary.json
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas   1574086 Jul  2 02:37 agis_ddmendpoints.agis.ALL.json
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas    472862 Jul  2 02:37 log.45435717._000024.job.log.tgz.1
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas      7848 Jul  2 02:37 heartbeat.json
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas      8192 Jul  2 02:37 boinc_mmap_file
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas        29 Jul  2 02:37 wrapper_checkpoint.txt
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas       822 Jul  2 02:38 pilotlog.txt
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas   1820363 Jul  2 02:38 log.45435717._000024.job.log.1
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas       357 Jul  2 02:38 output.list
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas       620 Jul  2 02:38 runtime_log
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas   2314240 Jul  2 02:38 result.tar.gz
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas      8756 Jul  2 02:38 runtime_log.err
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas       788 Jul  2 02:38 mhLMDmQtwq7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmf6KDmSGG72n.diag
[2025-07-02 02:38:11] -rw-r--r-- 1 boincer umatlas     23274 Jul  2 02:38 stderr.txt
[2025-07-02 02:38:11] HITS file was successfully produced:
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas 199579729 Jul  2 02:36 shared/HITS.pool.root.1
[2025-07-02 02:38:11]  *** Contents of shared directory: ***
[2025-07-02 02:38:11] total 467104
[2025-07-02 02:38:11] -rw-r--r-- 3 boincer umatlas 275850769 Jul  1 16:37 ATLAS.root_0
[2025-07-02 02:38:11] -rw-r--r-- 2 boincer umatlas     15095 Jul  1 16:37 start_atlas.sh
[2025-07-02 02:38:11] -rw-r--r-- 2 boincer umatlas    542897 Jul  1 16:37 input.tar.gz
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas 199579729 Jul  2 02:36 HITS.pool.root.1
[2025-07-02 02:38:11] -rw------- 1 boincer umatlas   2314240 Jul  2 02:38 result.tar.gz
02:38:12 (148945): run_atlas exited; CPU time 91239.683742
02:38:12 (148945): called boinc_finish(0)

</stderr_txt>
]]>

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