Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
23:59:32 (697315): wrapper (7.7.26015): starting
23:59:32 (697315): wrapper: running run_atlas (--nthreads 12)
[2025-07-01 23:59:32] Arguments: --nthreads 12
[2025-07-01 23:59:32] Threads: 12
[2025-07-01 23:59:32] Checking for CVMFS
[2025-07-01 23:59:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-01 23:59:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-01 23:59:33] Running cvmfs_config stat atlas.cern.ch
[2025-07-01 23:59:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-01 23:59:33] 2.12.7.0 2995445 1823 84944 147831 1 56 3106521 4194305 93 130560 0 4115341 99.996 69425 201 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2025-07-01 23:59:33] CVMFS is ok
[2025-07-01 23:59:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-01 23:59:33] Checking for apptainer binary...
[2025-07-01 23:59:33] apptainer is not installed, using version from CVMFS
[2025-07-01 23:59:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-01 23:59:33] Trebeth
[2025-07-01 23:59:33] apptainer works
[2025-07-01 23:59:33] Set ATHENA_PROC_NUMBER=12
[2025-07-01 23:59:33] Set ATHENA_CORE_NUMBER=12
[2025-07-01 23:59:33] Starting ATLAS job with PandaID=6716063824
[2025-07-01 23:59:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-02 00:57:25]  *** The last 200 lines of the pilot log: ***
[2025-07-02 00:57:25]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-02 00:57:25]  is_altstaged=None
[2025-07-02 00:57:25]  is_tar=False
[2025-07-02 00:57:25]  lfn=log.45418272._000403.job.log.tgz.1
[2025-07-02 00:57:25]  mtime=0
[2025-07-02 00:57:25]  protocol_id=None
[2025-07-02 00:57:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-02 00:57:25]  replicas=None
[2025-07-02 00:57:25]  scope=mc23_13p6TeV
[2025-07-02 00:57:25]  status=None
[2025-07-02 00:57:25]  status_code=0
[2025-07-02 00:57:25]  storage_token=
[2025-07-02 00:57:25]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6716063824/log.45418272._000403.job.log.tgz.1
[2025-07-02 00:57:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/d5/log.45418272._000403.job.log.tgz.1
[2025-07-02 00:57:25]  workdir=None
[2025-07-02 00:57:25] ]
[2025-07-02 00:57:25] 2025-07-02 04:56:48,770 | INFO     | transferring file log.45418272._000403.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6716063824/log.45418272._000403.job.log.tgz.1 to /var/lib/boinc
[2025-07-02 00:57:25] 2025-07-02 04:56:48,770 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6716063824/log.45418272._000403.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.454182
[2025-07-02 00:57:25] 2025-07-02 04:56:48,783 | INFO     | adding to output.list: log.45418272._000403.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/d5/log.45418272._000403.job.log.tg
[2025-07-02 00:57:25] 2025-07-02 04:56:48,784 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-02 00:57:25] 2025-07-02 04:56:48,784 | INFO     | summary of transferred files:
[2025-07-02 00:57:25] 2025-07-02 04:56:48,784 | INFO     |  -- lfn=log.45418272._000403.job.log.tgz.1, status_code=0, status=transferred
[2025-07-02 00:57:25] 2025-07-02 04:56:48,784 | INFO     | stage-out finished correctly
[2025-07-02 00:57:25] 2025-07-02 04:56:48,828 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-02 00:57:25] 2025-07-02 04:56:49,694 | INFO     | monitor loop #263: job 0:6716063824 is in state 'finished'
[2025-07-02 00:57:25] 2025-07-02 04:56:49,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-02 00:57:25] 2025-07-02 04:56:50,622 | INFO     | job 6716063824 has state=finished
[2025-07-02 00:57:25] 2025-07-02 04:56:50,623 | INFO     | preparing for final server update for job 6716063824 in state='finished'
[2025-07-02 00:57:25] 2025-07-02 04:56:50,623 | INFO     | this job has now completed (state=finished)
[2025-07-02 00:57:25] 2025-07-02 04:56:50,624 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-02 00:57:25] 2025-07-02 04:56:50,624 | INFO     | log transfer has been attempted: DONE
[2025-07-02 00:57:25] 2025-07-02 04:56:50,624 | INFO     | job 6716063824 has finished - writing final server update
[2025-07-02 00:57:25] 2025-07-02 04:56:50,624 | INFO     | total number of processed events: 400 (read)
[2025-07-02 00:57:25] 2025-07-02 04:56:50,625 | INFO     | executing command: lscpu
[2025-07-02 00:57:25] 2025-07-02 04:56:50,686 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-02 00:57:25] 2025-07-02 04:56:52,198 | INFO     | monitor loop #264: job 0:6716063824 is in state 'finished'
[2025-07-02 00:57:25] 2025-07-02 04:56:52,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-02 00:57:25] 2025-07-02 04:56:54,272 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-02 00:57:25] 2025-07-02 04:56:54,282 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 1251.7857142857142
[2025-07-02 00:57:25] 2025-07-02 04:56:54,314 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6716063824/memory_monitor_summary.json (trf name=prmon)
[2025-07-02 00:57:25] 2025-07-02 04:56:54,315 | INFO     | extracted standard info from prmon json
[2025-07-02 00:57:25] 2025-07-02 04:56:54,315 | INFO     | extracted standard memory fields from prmon json
[2025-07-02 00:57:25] 2025-07-02 04:56:54,315 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-02 00:57:25] 2025-07-02 04:56:54,315 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-02 00:57:25] 2025-07-02 04:56:54,315 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-02 00:57:25] 2025-07-02 04:56:54,316 | INFO     | fitting pss+swap vs Time
[2025-07-02 00:57:25] 2025-07-02 04:56:54,317 | INFO     | sum of square deviations: 36465800.0
[2025-07-02 00:57:25] 2025-07-02 04:56:54,317 | INFO     | sum of deviations: -1979455795.0000002
[2025-07-02 00:57:25] 2025-07-02 04:56:54,317 | INFO     | mean x: 1751430578.0
[2025-07-02 00:57:25] 2025-07-02 04:56:54,317 | INFO     | mean y: 2762254.4285714286
[2025-07-02 00:57:25] 2025-07-02 04:56:54,317 | INFO     | -- intersect: 95074840946.30699
[2025-07-02 00:57:25] 2025-07-02 04:56:54,317 | INFO     | intersect: 95074840946.30699
[2025-07-02 00:57:25] 2025-07-02 04:56:54,317 | INFO     | chi2: 0.022395277323128043
[2025-07-02 00:57:25] 2025-07-02 04:56:54,317 | INFO     | -- intersect: 95074840946.30699
[2025-07-02 00:57:25] 2025-07-02 04:56:54,317 | INFO     | current memory leak: -54.28 B/s (using 49 data points, chi2=0.02)
[2025-07-02 00:57:25] 2025-07-02 04:56:54,318 | INFO     | could have reported an average CPU frequency of 1442 MHz (5 samples)
[2025-07-02 00:57:25] 2025-07-02 04:56:54,318 | INFO     | ..............................
[2025-07-02 00:57:25] 2025-07-02 04:56:54,318 | INFO     | . Timing measurements:
[2025-07-02 00:57:25] 2025-07-02 04:56:54,318 | INFO     | . get job = 0 s
[2025-07-02 00:57:25] 2025-07-02 04:56:54,318 | INFO     | . initial setup = 2 s
[2025-07-02 00:57:25] 2025-07-02 04:56:54,318 | INFO     | . payload setup = 6 s
[2025-07-02 00:57:25] 2025-07-02 04:56:54,318 | INFO     | . stage-in = 0 s
[2025-07-02 00:57:25] 2025-07-02 04:56:54,318 | INFO     | . payload execution = 3398 s
[2025-07-02 00:57:25] 2025-07-02 04:56:54,318 | INFO     | . stage-out = 0 s
[2025-07-02 00:57:25] 2025-07-02 04:56:54,318 | INFO     | . log creation = 0 s
[2025-07-02 00:57:25] 2025-07-02 04:56:54,318 | INFO     | ..............................
[2025-07-02 00:57:25] 2025-07-02 04:56:54,365 | INFO     | 
[2025-07-02 00:57:25] 2025-07-02 04:56:54,365 | INFO     | job summary report
[2025-07-02 00:57:25] 2025-07-02 04:56:54,365 | INFO     | --------------------------------------------------
[2025-07-02 00:57:25] 2025-07-02 04:56:54,366 | INFO     | PanDA job id: 6716063824
[2025-07-02 00:57:25] 2025-07-02 04:56:54,366 | INFO     | task id: 45418272
[2025-07-02 00:57:25] 2025-07-02 04:56:54,366 | INFO     | errors: (none)
[2025-07-02 00:57:25] 2025-07-02 04:56:54,366 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-02 00:57:25] 2025-07-02 04:56:54,366 | INFO     | pilot state: finished 
[2025-07-02 00:57:25] 2025-07-02 04:56:54,366 | INFO     | transexitcode: 0
[2025-07-02 00:57:25] 2025-07-02 04:56:54,366 | INFO     | exeerrorcode: 0
[2025-07-02 00:57:25] 2025-07-02 04:56:54,366 | INFO     | exeerrordiag: 
[2025-07-02 00:57:25] 2025-07-02 04:56:54,367 | INFO     | exitcode: 0
[2025-07-02 00:57:25] 2025-07-02 04:56:54,367 | INFO     | exitmsg: OK
[2025-07-02 00:57:25] 2025-07-02 04:56:54,367 | INFO     | cpuconsumptiontime: 36323 s
[2025-07-02 00:57:25] 2025-07-02 04:56:54,367 | INFO     | nevents: 400
[2025-07-02 00:57:25] 2025-07-02 04:56:54,367 | INFO     | neventsw: 0
[2025-07-02 00:57:25] 2025-07-02 04:56:54,367 | INFO     | pid: 709497
[2025-07-02 00:57:25] 2025-07-02 04:56:54,367 | INFO     | pgrp: 709497
[2025-07-02 00:57:25] 2025-07-02 04:56:54,367 | INFO     | corecount: 12
[2025-07-02 00:57:25] 2025-07-02 04:56:54,367 | INFO     | event service: False
[2025-07-02 00:57:25] 2025-07-02 04:56:54,368 | INFO     | sizes: {0: 2366646, 1: 2366646, 4: 2366936, 11: 2366964, 3409: 2392645, 3410: 2401841, 3416: 2402011}
[2025-07-02 00:57:25] 2025-07-02 04:56:54,368 | INFO     | --------------------------------------------------
[2025-07-02 00:57:25] 2025-07-02 04:56:54,368 | INFO     | 
[2025-07-02 00:57:25] 2025-07-02 04:56:54,368 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-07-02 00:57:25] 2025-07-02 04:56:54,394 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,395 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,395 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,395 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,395 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,396 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,396 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,397 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-02 00:57:25] 2025-07-02 04:56:54,397 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,397 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-02 00:57:25] 2025-07-02 04:56:54,397 | INFO     | job 6716063824 has completed (purged errors)
[2025-07-02 00:57:25] 2025-07-02 04:56:54,397 | INFO     | overall cleanup function is called
[2025-07-02 00:57:25] 2025-07-02 04:56:55,405 | INFO     | --- collectZombieJob: --- 10, [709497]
[2025-07-02 00:57:25] 2025-07-02 04:56:55,406 | INFO     | zombie collector waiting for pid 709497
[2025-07-02 00:57:25] 2025-07-02 04:56:55,406 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-02 00:57:25] 2025-07-02 04:56:55,406 | INFO     | collected zombie processes
[2025-07-02 00:57:25] 2025-07-02 04:56:55,406 | INFO     | will attempt to kill all subprocesses of pid=709497
[2025-07-02 00:57:25] 2025-07-02 04:56:55,537 | INFO     | process IDs to be killed: [709497] (in reverse order)
[2025-07-02 00:57:25] 2025-07-02 04:56:55,588 | WARNING  | found no corresponding commands to process id(s)
[2025-07-02 00:57:25] 2025-07-02 04:56:55,589 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-02 00:57:25] 2025-07-02 04:56:55,595 | INFO     | did not find any defunct processes belonging to 709497
[2025-07-02 00:57:25] 2025-07-02 04:56:55,598 | INFO     | did not find any defunct processes belonging to 709497
[2025-07-02 00:57:25] 2025-07-02 04:56:55,598 | INFO     | ready for new job
[2025-07-02 00:57:25] 2025-07-02 04:56:55,598 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-02 00:57:25] 2025-07-02 04:56:55,599 | INFO     | ***************************************
[2025-07-02 00:57:25] 2025-07-02 04:56:55,599 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-02 00:57:25] 2025-07-02 04:56:55,599 | INFO     | ***************************************
[2025-07-02 00:57:25] 2025-07-02 04:56:55,599 | INFO     | 
[2025-07-02 00:57:25] 2025-07-02 04:56:55,622 | INFO     | architecture information:
[2025-07-02 00:57:25] 2025-07-02 04:56:55,623 | INFO     | executing command: cat /etc/os-release
[2025-07-02 00:57:25] 2025-07-02 04:56:55,634 | INFO     | cat /etc/os-release:
[2025-07-02 00:57:25] NAME="CentOS Linux"
[2025-07-02 00:57:25] VERSION="7 (Core)"
[2025-07-02 00:57:25] ID="centos"
[2025-07-02 00:57:25] ID_LIKE="rhel fedora"
[2025-07-02 00:57:25] VERSION_ID="7"
[2025-07-02 00:57:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-02 00:57:25] ANSI_COLOR="0;31"
[2025-07-02 00:57:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-02 00:57:25] HOME_URL="https://www.centos.org/"
[2025-07-02 00:57:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-02 00:57:25] 
[2025-07-02 00:57:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-02 00:57:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-02 00:57:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-02 00:57:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-02 00:57:25] 
[2025-07-02 00:57:25] 2025-07-02 04:56:55,634 | INFO     | ***************************************
[2025-07-02 00:57:25] 2025-07-02 04:56:56,137 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-07-02 00:57:25] 2025-07-02 04:56:56,153 | INFO     | sufficient remaining disk space (403247726592 B)
[2025-07-02 00:57:25] 2025-07-02 04:56:56,153 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-02 00:57:25] 2025-07-02 04:56:56,153 | INFO     | current server update state: UPDATING_FINAL
[2025-07-02 00:57:25] 2025-07-02 04:56:56,153 | INFO     | update_server=False
[2025-07-02 00:57:25] 2025-07-02 04:56:56,153 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-02 00:57:25] 2025-07-02 04:56:56,154 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-02 00:57:25] 2025-07-02 04:56:56,154 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-02 00:57:25] 2025-07-02 04:56:56,154 | INFO     | aborting loop
[2025-07-02 00:57:25] 2025-07-02 04:56:56,182 | INFO     | all job control threads have been joined
[2025-07-02 00:57:25] 2025-07-02 04:56:56,604 | INFO     | all payload control threads have been joined
[2025-07-02 00:57:25] 2025-07-02 04:56:56,845 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-02 00:57:25] 2025-07-02 04:56:56,980 | INFO     | all data control threads have been joined
[2025-07-02 00:57:25] 2025-07-02 04:56:57,159 | INFO     | [job] retrieve thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:57,160 | INFO     | [job] queue monitor thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:57,160 | INFO     | [job] job monitor thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:57,187 | INFO     | [job] control thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:57,234 | INFO     | [payload] execute_payloads thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:57,610 | INFO     | [payload] control thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:57,887 | INFO     | [payload] validate_post thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:57,960 | INFO     | [data] copytool_in thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:57,985 | INFO     | [data] control thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:58,047 | INFO     | [payload] failed_post thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:58,191 | INFO     | [job] validate thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:58,358 | INFO     | [job] create_data_payload thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:58,467 | INFO     | [payload] validate_pre thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:58,850 | INFO     | [data] copytool_out thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:56:59,381 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-02 00:57:25] 2025-07-02 04:57:03,387 | INFO     | [data] queue_monitor thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:57:06,591 | INFO     | job.realtimelogging is not enabled
[2025-07-02 00:57:25] 2025-07-02 04:57:07,596 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-02 00:57:25] 2025-07-02 04:57:09,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140454145513280)>', '<ExcThread(monitor, started 140453835937536)>']
[2025-07-02 00:57:25] 2025-07-02 04:57:14,519 | INFO     | all workflow threads have been joined
[2025-07-02 00:57:25] 2025-07-02 04:57:14,520 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-02 00:57:25] 2025-07-02 04:57:14,520 | INFO     | traces error code: 0
[2025-07-02 00:57:25] 2025-07-02 04:57:14,520 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-02 00:57:25] 2025-07-02 04:57:25,670 | INFO     | PID=701232 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-02 00:57:25] 2025-07-02 04:57:25,671 | INFO     | found 0 job(s) in 20 queues
[2025-07-02 00:57:25] 2025-07-02 04:57:25,671 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-02 00:57:25] 2025-07-02 04:57:25,671 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-02 00:57:25] 2025-07-02 04:57:25,671 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-02 00:57:25] 2025-07-02 04:57:25,671 | INFO     | [monitor] control thread has ended
[2025-07-02 00:57:25] 2025-07-02 04:57:25,734 [wrapper] ==== pilot stdout END ====
[2025-07-02 00:57:25] 2025-07-02 04:57:25,737 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-02 00:57:25] 2025-07-02 04:57:25,740 [wrapper] pilotpid: 701232
[2025-07-02 00:57:25] 2025-07-02 04:57:25,741 [wrapper] Pilot exit status: 0
[2025-07-02 00:57:25] 2025-07-02 04:57:25,751 [wrapper] pandaids: 6716063824
[2025-07-02 00:57:25] 2025-07-02 04:57:25,784 [wrapper] cleanup supervisor_pilot  746247 701233
[2025-07-02 00:57:25] 2025-07-02 04:57:25,786 [wrapper] Test setup, not cleaning
[2025-07-02 00:57:25] 2025-07-02 04:57:25,788 [wrapper] apfmon messages muted
[2025-07-02 00:57:25] 2025-07-02 04:57:25,790 [wrapper] ==== wrapper stdout END ====
[2025-07-02 00:57:25] 2025-07-02 04:57:25,791 [wrapper] ==== wrapper stderr END ====
[2025-07-02 00:57:25]  *** Error codes and diagnostics ***
[2025-07-02 00:57:25]     "exeErrorCode": 0,
[2025-07-02 00:57:25]     "exeErrorDiag": "",
[2025-07-02 00:57:25]     "pilotErrorCode": 0,
[2025-07-02 00:57:25]     "pilotErrorDiag": "",
[2025-07-02 00:57:25]  *** Listing of results directory ***
[2025-07-02 00:57:25] total 447456
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc    530466 Jul  1 07:26 pilot3.tar.gz
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc      5112 Jul  1 07:29 queuedata.json
[2025-07-02 00:57:25] -rwx------ 1 boinc boinc     36292 Jul  1 07:30 runpilot2-wrapper.sh
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc       100 Jul  1 23:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-02 00:57:25] -rwxr-xr-x 1 boinc boinc      7986 Jul  1 23:59 run_atlas
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc       105 Jul  1 23:59 job.xml
[2025-07-02 00:57:25] -rw-r--r-- 2 boinc boinc     15095 Jul  1 23:59 start_atlas.sh
[2025-07-02 00:57:25] drwxrwx--x 2 boinc boinc      4096 Jul  1 23:59 shared
[2025-07-02 00:57:25] -rw-r--r-- 2 boinc boinc    542904 Jul  1 23:59 input.tar.gz
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc      7599 Jul  1 23:59 init_data.xml
[2025-07-02 00:57:25] -rw-r--r-- 2 boinc boinc 253381711 Jul  1 23:59 EVNT.45418270._000017.pool.root.1
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc         0 Jul  1 23:59 boinc_lockfile
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc      2597 Jul  1 23:59 pandaJob.out
[2025-07-02 00:57:25] -rw------- 1 boinc boinc    969903 Jul  1 23:59 agis_schedconf.cvmfs.json
[2025-07-02 00:57:25] -rw------- 1 boinc boinc   1574086 Jul  1 23:59 agis_ddmendpoints.agis.ALL.json
[2025-07-02 00:57:25] drwx------ 4 boinc boinc      4096 Jul  1 23:59 pilot3
[2025-07-02 00:57:25] -rw------- 1 boinc boinc 199567274 Jul  2 00:56 HITS.45418272._000403.pool.root.1
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc       529 Jul  2 00:56 boinc_task_state.xml
[2025-07-02 00:57:25] -rw------- 1 boinc boinc      1023 Jul  2 00:56 memory_monitor_summary.json
[2025-07-02 00:57:25] -rw------- 1 boinc boinc    340533 Jul  2 00:56 log.45418272._000403.job.log.tgz.1
[2025-07-02 00:57:25] -rw------- 1 boinc boinc      7768 Jul  2 00:56 heartbeat.json
[2025-07-02 00:57:25] -rw------- 1 boinc boinc       746 Jul  2 00:57 pilotlog.txt
[2025-07-02 00:57:25] -rw------- 1 boinc boinc        95 Jul  2 00:57 pilot_heartbeat.json
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc      8192 Jul  2 00:57 boinc_mmap_file
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc        27 Jul  2 00:57 wrapper_checkpoint.txt
[2025-07-02 00:57:25] -rw------- 1 boinc boinc    359800 Jul  2 00:57 log.45418272._000403.job.log.1
[2025-07-02 00:57:25] -rw------- 1 boinc boinc       357 Jul  2 00:57 output.list
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc       620 Jul  2 00:57 runtime_log
[2025-07-02 00:57:25] -rw------- 1 boinc boinc    716800 Jul  2 00:57 result.tar.gz
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc      8729 Jul  2 00:57 runtime_log.err
[2025-07-02 00:57:25] -rw------- 1 boinc boinc       649 Jul  2 00:57 aS1LDmGNoq7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlA6KDmhdd5vn.diag
[2025-07-02 00:57:25] -rw-r--r-- 1 boinc boinc     21173 Jul  2 00:57 stderr.txt
[2025-07-02 00:57:25] HITS file was successfully produced:
[2025-07-02 00:57:25] -rw------- 1 boinc boinc 199567274 Jul  2 00:56 shared/HITS.pool.root.1
[2025-07-02 00:57:25]  *** Contents of shared directory: ***
[2025-07-02 00:57:25] total 443592
[2025-07-02 00:57:25] -rw-r--r-- 2 boinc boinc     15095 Jul  1 23:59 start_atlas.sh
[2025-07-02 00:57:25] -rw-r--r-- 2 boinc boinc    542904 Jul  1 23:59 input.tar.gz
[2025-07-02 00:57:25] -rw-r--r-- 2 boinc boinc 253381711 Jul  1 23:59 ATLAS.root_0
[2025-07-02 00:57:25] -rw------- 1 boinc boinc 199567274 Jul  2 00:56 HITS.pool.root.1
[2025-07-02 00:57:25] -rw------- 1 boinc boinc    716800 Jul  2 00:57 result.tar.gz
00:57:27 (697315): run_atlas exited; CPU time 36366.406840
00:57:27 (697315): called boinc_finish(0)

</stderr_txt>
]]>

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