Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:44:24 (160169): wrapper (7.7.26015): starting
05:44:24 (160169): wrapper: running run_atlas (--nthreads 4)
[2025-07-01 05:44:24] Arguments: --nthreads 4
[2025-07-01 05:44:24] Threads: 4
[2025-07-01 05:44:24] Checking for CVMFS
[2025-07-01 05:44:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-01 05:44:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-01 05:44:24] Running cvmfs_config stat atlas.cern.ch
[2025-07-01 05:44:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-01 05:44:24] 2.9.2.0 3003 498 71036 147791 2 55 26019694 36864000 0 130560 0 417242 99.989 17332 5677 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-01 05:44:24] CVMFS is ok
[2025-07-01 05:44:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-01 05:44:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-01 05:44:24] Further information can be found at the LHC@home message board.
[2025-07-01 05:44:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-01 05:44:24] Checking for apptainer binary...
[2025-07-01 05:44:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-01 05:44:24] Running /usr/bin/apptainer --version
[2025-07-01 05:44:24] apptainer version 1.4.1-1.1
[2025-07-01 05:44:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-01 05:44:24] belleA263a
[2025-07-01 05:44:24] apptainer works
[2025-07-01 05:44:24] Set ATHENA_PROC_NUMBER=4
[2025-07-01 05:44:24] Set ATHENA_CORE_NUMBER=4
[2025-07-01 05:44:24] Starting ATLAS job with PandaID=6715257439
[2025-07-01 05:44:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-01 07:22:47]  *** The last 200 lines of the pilot log: ***
[2025-07-01 07:22:47]  mtime=0
[2025-07-01 07:22:47]  protocol_id=None
[2025-07-01 07:22:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-01 07:22:47]  replicas=None
[2025-07-01 07:22:47]  scope=mc23_13p6TeV
[2025-07-01 07:22:47]  status=None
[2025-07-01 07:22:47]  status_code=0
[2025-07-01 07:22:47]  storage_token=
[2025-07-01 07:22:47]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6715257439/log.45418943._000268.job.log.tgz.1
[2025-07-01 07:22:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/ff/log.45418943._000268.job.log.tgz.1
[2025-07-01 07:22:47]  workdir=None
[2025-07-01 07:22:47] ]
[2025-07-01 07:22:47] 2025-07-01 05:22:07,900 | INFO     | transferring file log.45418943._000268.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6715257439/log.45418943._000268.job.log.tgz.1 to /local/data/boinc/
[2025-07-01 07:22:47] 2025-07-01 05:22:07,900 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6715257439/log.45418943._000268.job.log.tgz.1 /local/data/boinc/slots/0/log.45418943._0002
[2025-07-01 07:22:47] 2025-07-01 05:22:07,920 | INFO     | adding to output.list: log.45418943._000268.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/ff/log.45418943._000268.job.log.tg
[2025-07-01 07:22:47] 2025-07-01 05:22:07,920 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-01 07:22:47] 2025-07-01 05:22:07,920 | INFO     | summary of transferred files:
[2025-07-01 07:22:47] 2025-07-01 05:22:07,920 | INFO     |  -- lfn=log.45418943._000268.job.log.tgz.1, status_code=0, status=transferred
[2025-07-01 07:22:47] 2025-07-01 05:22:07,920 | INFO     | stage-out finished correctly
[2025-07-01 07:22:47] 2025-07-01 05:22:08,485 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-01 07:22:47] 2025-07-01 05:22:08,763 | INFO     | monitor loop #449: job 0:6715257439 is in state 'finished'
[2025-07-01 07:22:47] 2025-07-01 05:22:08,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-01 07:22:47] 2025-07-01 05:22:10,726 | INFO     | job 6715257439 has state=finished
[2025-07-01 07:22:47] 2025-07-01 05:22:10,727 | INFO     | preparing for final server update for job 6715257439 in state='finished'
[2025-07-01 07:22:47] 2025-07-01 05:22:10,727 | INFO     | this job has now completed (state=finished)
[2025-07-01 07:22:47] 2025-07-01 05:22:10,727 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-01 07:22:47] 2025-07-01 05:22:10,727 | INFO     | log transfer has been attempted: DONE
[2025-07-01 07:22:47] 2025-07-01 05:22:10,727 | INFO     | job 6715257439 has finished - writing final server update
[2025-07-01 07:22:47] 2025-07-01 05:22:10,727 | INFO     | total number of processed events: 400 (read)
[2025-07-01 07:22:47] 2025-07-01 05:22:10,728 | INFO     | executing command: lscpu
[2025-07-01 07:22:47] 2025-07-01 05:22:10,750 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-01 07:22:47] 2025-07-01 05:22:11,266 | INFO     | monitor loop #450: job 0:6715257439 is in state 'finished'
[2025-07-01 07:22:47] 2025-07-01 05:22:11,266 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-01 07:22:47] 2025-07-01 05:22:13,156 | INFO     | PID=163864 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-01 07:22:47] 2025-07-01 05:22:13,769 | INFO     | monitor loop #451: job 0:6715257439 is in state 'finished'
[2025-07-01 07:22:47] 2025-07-01 05:22:13,769 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-01 07:22:47] 2025-07-01 05:22:14,151 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-01 07:22:47] 2025-07-01 05:22:14,152 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3409.957124999999
[2025-07-01 07:22:47] 2025-07-01 05:22:14,153 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6715257439/memory_monitor_summary.json (trf name=prmon)
[2025-07-01 07:22:47] 2025-07-01 05:22:14,154 | INFO     | extracted standard info from prmon json
[2025-07-01 07:22:47] 2025-07-01 05:22:14,154 | INFO     | extracted standard memory fields from prmon json
[2025-07-01 07:22:47] 2025-07-01 05:22:14,154 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-01 07:22:47] 2025-07-01 05:22:14,154 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-01 07:22:47] 2025-07-01 05:22:14,154 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-01 07:22:47] 2025-07-01 05:22:14,155 | INFO     | fitting pss+swap vs Time
[2025-07-01 07:22:47] 2025-07-01 05:22:14,155 | INFO     | sum of square deviations: 218571540.0
[2025-07-01 07:22:47] 2025-07-01 05:22:14,155 | INFO     | sum of deviations: -20156358283.000004
[2025-07-01 07:22:47] 2025-07-01 05:22:14,155 | INFO     | mean x: 1751344485.0
[2025-07-01 07:22:47] 2025-07-01 05:22:14,155 | INFO     | mean y: 2563612.5168539328
[2025-07-01 07:22:47] 2025-07-01 05:22:14,155 | INFO     | -- intersect: 161509075012.01617
[2025-07-01 07:22:47] 2025-07-01 05:22:14,155 | INFO     | intersect: 161509075012.01617
[2025-07-01 07:22:47] 2025-07-01 05:22:14,155 | INFO     | chi2: 0.11539072721152341
[2025-07-01 07:22:47] 2025-07-01 05:22:14,155 | INFO     | -- intersect: 161509075012.01617
[2025-07-01 07:22:47] 2025-07-01 05:22:14,155 | INFO     | current memory leak: -92.22 B/s (using 89 data points, chi2=0.12)
[2025-07-01 07:22:47] 2025-07-01 05:22:14,156 | INFO     | could have reported an average CPU frequency of 3712 MHz (7 samples)
[2025-07-01 07:22:47] 2025-07-01 05:22:14,156 | INFO     | ..............................
[2025-07-01 07:22:47] 2025-07-01 05:22:14,156 | INFO     | . Timing measurements:
[2025-07-01 07:22:47] 2025-07-01 05:22:14,156 | INFO     | . get job = 0 s
[2025-07-01 07:22:47] 2025-07-01 05:22:14,156 | INFO     | . initial setup = 1 s
[2025-07-01 07:22:47] 2025-07-01 05:22:14,156 | INFO     | . payload setup = 5 s
[2025-07-01 07:22:47] 2025-07-01 05:22:14,156 | INFO     | . stage-in = 0 s
[2025-07-01 07:22:47] 2025-07-01 05:22:14,156 | INFO     | . payload execution = 5831 s
[2025-07-01 07:22:47] 2025-07-01 05:22:14,156 | INFO     | . stage-out = 0 s
[2025-07-01 07:22:47] 2025-07-01 05:22:14,156 | INFO     | . log creation = 0 s
[2025-07-01 07:22:47] 2025-07-01 05:22:14,156 | INFO     | ..............................
[2025-07-01 07:22:47] 2025-07-01 05:22:14,572 | INFO     | 
[2025-07-01 07:22:47] 2025-07-01 05:22:14,572 | INFO     | job summary report
[2025-07-01 07:22:47] 2025-07-01 05:22:14,572 | INFO     | --------------------------------------------------
[2025-07-01 07:22:47] 2025-07-01 05:22:14,572 | INFO     | PanDA job id: 6715257439
[2025-07-01 07:22:47] 2025-07-01 05:22:14,572 | INFO     | task id: 45418943
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | errors: (none)
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | pilot state: finished 
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | transexitcode: 0
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | exeerrorcode: 0
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | exeerrordiag: 
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | exitcode: 0
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | exitmsg: OK
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | cpuconsumptiontime: 22242 s
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | nevents: 400
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | neventsw: 0
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | pid: 170501
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | pgrp: 170501
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | corecount: 4
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | event service: False
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | sizes: {0: 2366578, 4: 2366840, 11: 2366868, 5840: 2393741, 5842: 2402801, 5848: 2402939}
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | --------------------------------------------------
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | 
[2025-07-01 07:22:47] 2025-07-01 05:22:14,573 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-01 07:22:47] 2025-07-01 05:22:14,595 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,595 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,595 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,595 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,595 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,595 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,595 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,595 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,596 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,596 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-01 07:22:47] 2025-07-01 05:22:14,596 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,596 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-01 07:22:47] 2025-07-01 05:22:14,596 | INFO     | job 6715257439 has completed (purged errors)
[2025-07-01 07:22:47] 2025-07-01 05:22:14,596 | INFO     | overall cleanup function is called
[2025-07-01 07:22:47] 2025-07-01 05:22:15,602 | INFO     | --- collectZombieJob: --- 10, [170501]
[2025-07-01 07:22:47] 2025-07-01 05:22:15,603 | INFO     | zombie collector waiting for pid 170501
[2025-07-01 07:22:47] 2025-07-01 05:22:15,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-01 07:22:47] 2025-07-01 05:22:15,603 | INFO     | collected zombie processes
[2025-07-01 07:22:47] 2025-07-01 05:22:15,603 | INFO     | will attempt to kill all subprocesses of pid=170501
[2025-07-01 07:22:47] 2025-07-01 05:22:15,647 | INFO     | process IDs to be killed: [170501] (in reverse order)
[2025-07-01 07:22:47] 2025-07-01 05:22:15,680 | WARNING  | found no corresponding commands to process id(s)
[2025-07-01 07:22:47] 2025-07-01 05:22:15,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-01 07:22:47] 2025-07-01 05:22:15,682 | INFO     | did not find any defunct processes belonging to 170501
[2025-07-01 07:22:47] 2025-07-01 05:22:15,683 | INFO     | did not find any defunct processes belonging to 170501
[2025-07-01 07:22:47] 2025-07-01 05:22:15,683 | INFO     | ready for new job
[2025-07-01 07:22:47] 2025-07-01 05:22:15,683 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-01 07:22:47] 2025-07-01 05:22:15,684 | INFO     | ***************************************
[2025-07-01 07:22:47] 2025-07-01 05:22:15,684 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-01 07:22:47] 2025-07-01 05:22:15,684 | INFO     | ***************************************
[2025-07-01 07:22:47] 2025-07-01 05:22:15,684 | INFO     | 
[2025-07-01 07:22:47] 2025-07-01 05:22:15,684 | INFO     | architecture information:
[2025-07-01 07:22:47] 2025-07-01 05:22:15,684 | INFO     | executing command: cat /etc/os-release
[2025-07-01 07:22:47] 2025-07-01 05:22:15,698 | INFO     | cat /etc/os-release:
[2025-07-01 07:22:47] NAME="CentOS Linux"
[2025-07-01 07:22:47] VERSION="7 (Core)"
[2025-07-01 07:22:47] ID="centos"
[2025-07-01 07:22:47] ID_LIKE="rhel fedora"
[2025-07-01 07:22:47] VERSION_ID="7"
[2025-07-01 07:22:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-01 07:22:47] ANSI_COLOR="0;31"
[2025-07-01 07:22:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-01 07:22:47] HOME_URL="https://www.centos.org/"
[2025-07-01 07:22:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-01 07:22:47] 
[2025-07-01 07:22:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-01 07:22:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-01 07:22:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-01 07:22:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-01 07:22:47] 
[2025-07-01 07:22:47] 2025-07-01 05:22:15,699 | INFO     | ***************************************
[2025-07-01 07:22:47] 2025-07-01 05:22:16,202 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-01 07:22:47] 2025-07-01 05:22:16,219 | INFO     | sufficient remaining disk space (330962042880 B)
[2025-07-01 07:22:47] 2025-07-01 05:22:16,219 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-01 07:22:47] 2025-07-01 05:22:16,220 | INFO     | current server update state: UPDATING_FINAL
[2025-07-01 07:22:47] 2025-07-01 05:22:16,220 | INFO     | update_server=False
[2025-07-01 07:22:47] 2025-07-01 05:22:16,220 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-01 07:22:47] 2025-07-01 05:22:16,220 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-01 07:22:47] 2025-07-01 05:22:16,273 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-01 07:22:47] 2025-07-01 05:22:16,273 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-01 07:22:47] 2025-07-01 05:22:16,273 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-01 07:22:47] 2025-07-01 05:22:16,273 | INFO     | will abort loop
[2025-07-01 07:22:47] 2025-07-01 05:22:16,971 | INFO     | all data control threads have been joined
[2025-07-01 07:22:47] 2025-07-01 05:22:17,004 | INFO     | all job control threads have been joined
[2025-07-01 07:22:47] 2025-07-01 05:22:17,225 | INFO     | [job] retrieve thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:17,236 | INFO     | [payload] validate_post thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:17,271 | INFO     | [payload] validate_pre thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:17,273 | INFO     | all payload control threads have been joined
[2025-07-01 07:22:47] 2025-07-01 05:22:17,279 | INFO     | [job] job monitor thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:17,630 | INFO     | [payload] failed_post thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:17,766 | INFO     | [data] copytool_in thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:17,977 | INFO     | [data] control thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:18,010 | INFO     | [job] control thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:18,098 | INFO     | [payload] execute_payloads thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:18,226 | INFO     | [data] copytool_out thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:18,279 | INFO     | [payload] control thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:18,401 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:18,611 | INFO     | [job] validate thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:18,696 | INFO     | [job] create_data_payload thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:19,039 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-01 07:22:47] 2025-07-01 05:22:19,208 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-01 07:22:47] 2025-07-01 05:22:20,214 | INFO     | [job] queue monitor thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:23,046 | INFO     | [data] queue_monitor thread has finished
[2025-07-01 07:22:47] 2025-07-01 05:22:24,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140301148845888)>', '<ExcThread(monitor, started 140300508968704)>']
[2025-07-01 07:22:47] 2025-07-01 05:22:29,899 | INFO     | all workflow threads have been joined
[2025-07-01 07:22:47] 2025-07-01 05:22:29,900 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-01 07:22:47] 2025-07-01 05:22:29,900 | INFO     | traces error code: 0
[2025-07-01 07:22:47] 2025-07-01 05:22:29,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-01 07:22:47] 2025-07-01 05:22:47,295 | INFO     | PID=163864 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-01 07:22:47] 2025-07-01 05:22:47,295 | INFO     | found 0 job(s) in 20 queues
[2025-07-01 07:22:47] 2025-07-01 05:22:47,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-01 07:22:47] 2025-07-01 05:22:47,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-01 07:22:47] 2025-07-01 05:22:47,295 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-01 07:22:47] 2025-07-01 05:22:47,295 | INFO     | [monitor] control thread has ended
[2025-07-01 07:22:47] 2025-07-01 05:22:47,370 [wrapper] ==== pilot stdout END ====
[2025-07-01 07:22:47] 2025-07-01 05:22:47,374 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-01 07:22:47] 2025-07-01 05:22:47,378 [wrapper] pilotpid: 163864
[2025-07-01 07:22:47] 2025-07-01 05:22:47,382 [wrapper] Pilot exit status: 0
[2025-07-01 07:22:47] 2025-07-01 05:22:47,394 [wrapper] pandaids: 6715257439
[2025-07-01 07:22:47] 2025-07-01 05:22:47,416 [wrapper] cleanup supervisor_pilot  182799 163865
[2025-07-01 07:22:47] 2025-07-01 05:22:47,420 [wrapper] Test setup, not cleaning
[2025-07-01 07:22:47] 2025-07-01 05:22:47,423 [wrapper] apfmon messages muted
[2025-07-01 07:22:47] 2025-07-01 05:22:47,427 [wrapper] ==== wrapper stdout END ====
[2025-07-01 07:22:47] 2025-07-01 05:22:47,431 [wrapper] ==== wrapper stderr END ====
[2025-07-01 07:22:47]  *** Error codes and diagnostics ***
[2025-07-01 07:22:47]     "exeErrorCode": 0,
[2025-07-01 07:22:47]     "exeErrorDiag": "",
[2025-07-01 07:22:47]     "pilotErrorCode": 0,
[2025-07-01 07:22:47]     "pilotErrorDiag": "",
[2025-07-01 07:22:47]  *** Listing of results directory ***
[2025-07-01 07:22:47] total 430340
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc    530466 Jul  1 02:42 pilot3.tar.gz
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc      5112 Jul  1 03:26 queuedata.json
[2025-07-01 07:22:47] -rwx------ 1 boinc boinc     36292 Jul  1 03:26 runpilot2-wrapper.sh
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc       100 Jul  1 05:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-01 07:22:47] -rwxr-xr-x 1 boinc boinc      7986 Jul  1 05:44 run_atlas
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc       105 Jul  1 05:44 job.xml
[2025-07-01 07:22:47] -rw-r--r-- 2 boinc boinc 249124441 Jul  1 05:44 EVNT.45418941._000011.pool.root.1
[2025-07-01 07:22:47] -rw-r--r-- 2 boinc boinc    542901 Jul  1 05:44 input.tar.gz
[2025-07-01 07:22:47] -rw-r--r-- 2 boinc boinc     15095 Jul  1 05:44 start_atlas.sh
[2025-07-01 07:22:47] drwxrwx--x 2 boinc boinc      4096 Jul  1 05:44 shared
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc         0 Jul  1 05:44 boinc_setup_complete
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc      6382 Jul  1 05:44 init_data.xml
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc         0 Jul  1 05:44 boinc_lockfile
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc      2582 Jul  1 05:44 pandaJob.out
[2025-07-01 07:22:47] -rw------- 1 boinc boinc    970049 Jul  1 05:44 agis_schedconf.cvmfs.json
[2025-07-01 07:22:47] -rw------- 1 boinc boinc   1574086 Jul  1 05:44 agis_ddmendpoints.agis.ALL.json
[2025-07-01 07:22:47] drwx------ 4 boinc boinc      4096 Jul  1 05:44 pilot3
[2025-07-01 07:22:47] -rw------- 1 boinc boinc 186052238 Jul  1 07:21 HITS.45418943._000268.pool.root.1
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc       529 Jul  1 07:21 boinc_task_state.xml
[2025-07-01 07:22:47] -rw------- 1 boinc boinc        95 Jul  1 07:22 pilot_heartbeat.json
[2025-07-01 07:22:47] -rw------- 1 boinc boinc      1018 Jul  1 07:22 memory_monitor_summary.json
[2025-07-01 07:22:47] -rw------- 1 boinc boinc    258855 Jul  1 07:22 log.45418943._000268.job.log.tgz.1
[2025-07-01 07:22:47] -rw------- 1 boinc boinc      7764 Jul  1 07:22 heartbeat.json
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc        27 Jul  1 07:22 wrapper_checkpoint.txt
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc      8192 Jul  1 07:22 boinc_mmap_file
[2025-07-01 07:22:47] -rw------- 1 boinc boinc       746 Jul  1 07:22 pilotlog.txt
[2025-07-01 07:22:47] -rw------- 1 boinc boinc    561719 Jul  1 07:22 log.45418943._000268.job.log.1
[2025-07-01 07:22:47] -rw------- 1 boinc boinc       357 Jul  1 07:22 output.list
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc       620 Jul  1 07:22 runtime_log
[2025-07-01 07:22:47] -rw------- 1 boinc boinc    839680 Jul  1 07:22 result.tar.gz
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc      8754 Jul  1 07:22 runtime_log.err
[2025-07-01 07:22:47] -rw------- 1 boinc boinc       663 Jul  1 07:22 FboMDmcweq7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0FmKDm8HiFwn.diag
[2025-07-01 07:22:47] -rw-r--r-- 1 boinc boinc     21810 Jul  1 07:22 stderr.txt
[2025-07-01 07:22:47] HITS file was successfully produced:
[2025-07-01 07:22:47] -rw------- 1 boinc boinc 186052238 Jul  1 07:21 shared/HITS.pool.root.1
[2025-07-01 07:22:47]  *** Contents of shared directory: ***
[2025-07-01 07:22:47] total 426356
[2025-07-01 07:22:47] -rw-r--r-- 2 boinc boinc 249124441 Jul  1 05:44 ATLAS.root_0
[2025-07-01 07:22:47] -rw-r--r-- 2 boinc boinc    542901 Jul  1 05:44 input.tar.gz
[2025-07-01 07:22:47] -rw-r--r-- 2 boinc boinc     15095 Jul  1 05:44 start_atlas.sh
[2025-07-01 07:22:47] -rw------- 1 boinc boinc 186052238 Jul  1 07:21 HITS.pool.root.1
[2025-07-01 07:22:47] -rw------- 1 boinc boinc    839680 Jul  1 07:22 result.tar.gz
07:22:48 (160169): run_atlas exited; CPU time 22261.077449
07:22:48 (160169): called boinc_finish(0)

</stderr_txt>
]]>

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