Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
11:37:20 (4158005): wrapper (7.7.26015): starting
11:37:20 (4158005): wrapper: running run_atlas (--nthreads 12)
[2025-07-01 11:37:20] Arguments: --nthreads 12
[2025-07-01 11:37:20] Threads: 12
[2025-07-01 11:37:20] Checking for CVMFS
[2025-07-01 11:37:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-01 11:37:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-01 11:37:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-01 11:37:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-01 11:37:20] 2.12.7.0 2995445 1080 80180 147813 2 56 2952104 4194305 917 130560 0 2524304 99.996 46737 140 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2025-07-01 11:37:20] CVMFS is ok
[2025-07-01 11:37:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-01 11:37:20] Checking for apptainer binary...
[2025-07-01 11:37:20] apptainer is not installed, using version from CVMFS
[2025-07-01 11:37:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-01 11:37:20] Trebeth
[2025-07-01 11:37:20] apptainer works
[2025-07-01 11:37:20] Set ATHENA_PROC_NUMBER=12
[2025-07-01 11:37:20] Set ATHENA_CORE_NUMBER=12
[2025-07-01 11:37:20] Starting ATLAS job with PandaID=6715257524
[2025-07-01 11:37:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-01 12:33:57]  *** The last 200 lines of the pilot log: ***
[2025-07-01 12:33:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-01 12:33:57]  replicas=None
[2025-07-01 12:33:57]  scope=mc23_13p6TeV
[2025-07-01 12:33:57]  status=None
[2025-07-01 12:33:57]  status_code=0
[2025-07-01 12:33:57]  storage_token=
[2025-07-01 12:33:57]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6715257524/log.45418943._000353.job.log.tgz.1
[2025-07-01 12:33:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/c2/log.45418943._000353.job.log.tgz.1
[2025-07-01 12:33:57]  workdir=None
[2025-07-01 12:33:57] ]
[2025-07-01 12:33:57] 2025-07-01 16:33:13,044 | INFO     | transferring file log.45418943._000353.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6715257524/log.45418943._000353.job.log.tgz.1 to /var/lib/boinc
[2025-07-01 12:33:57] 2025-07-01 16:33:13,044 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6715257524/log.45418943._000353.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.454189
[2025-07-01 12:33:57] 2025-07-01 16:33:13,057 | INFO     | adding to output.list: log.45418943._000353.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/c2/log.45418943._000353.job.log.tg
[2025-07-01 12:33:57] 2025-07-01 16:33:13,058 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-01 12:33:57] 2025-07-01 16:33:13,058 | INFO     | summary of transferred files:
[2025-07-01 12:33:57] 2025-07-01 16:33:13,059 | INFO     |  -- lfn=log.45418943._000353.job.log.tgz.1, status_code=0, status=transferred
[2025-07-01 12:33:57] 2025-07-01 16:33:13,059 | INFO     | stage-out finished correctly
[2025-07-01 12:33:57] 2025-07-01 16:33:13,272 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-01 12:33:57] 2025-07-01 16:33:13,321 | INFO     | job 6715257524 has state=finished
[2025-07-01 12:33:57] 2025-07-01 16:33:13,321 | INFO     | preparing for final server update for job 6715257524 in state='finished'
[2025-07-01 12:33:57] 2025-07-01 16:33:13,618 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-01 12:33:57] 2025-07-01 16:33:13,619 | INFO     | this job has now completed (state=finished)
[2025-07-01 12:33:57] 2025-07-01 16:33:13,619 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-01 12:33:57] 2025-07-01 16:33:13,619 | INFO     | log transfer has been attempted: DONE
[2025-07-01 12:33:57] 2025-07-01 16:33:13,619 | INFO     | job 6715257524 has finished - writing final server update
[2025-07-01 12:33:57] 2025-07-01 16:33:13,619 | INFO     | total number of processed events: 400 (read)
[2025-07-01 12:33:57] 2025-07-01 16:33:13,621 | INFO     | executing command: lscpu
[2025-07-01 12:33:57] 2025-07-01 16:33:13,676 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-01 12:33:57] 2025-07-01 16:33:14,824 | INFO     | monitor loop #256: job 0:6715257524 is in state 'finished'
[2025-07-01 12:33:57] 2025-07-01 16:33:14,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-01 12:33:57] 2025-07-01 16:33:17,328 | INFO     | monitor loop #257: job 0:6715257524 is in state 'finished'
[2025-07-01 12:33:57] 2025-07-01 16:33:17,328 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-01 12:33:57] 2025-07-01 16:33:19,830 | INFO     | monitor loop #258: job 0:6715257524 is in state 'finished'
[2025-07-01 12:33:57] 2025-07-01 16:33:19,831 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-01 12:33:57] 2025-07-01 16:33:22,334 | INFO     | monitor loop #259: job 0:6715257524 is in state 'finished'
[2025-07-01 12:33:57] 2025-07-01 16:33:22,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-01 12:33:57] 2025-07-01 16:33:23,614 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-01 12:33:57] 2025-07-01 16:33:23,639 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 1592.7021607142854
[2025-07-01 12:33:57] 2025-07-01 16:33:23,644 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6715257524/memory_monitor_summary.json (trf name=prmon)
[2025-07-01 12:33:57] 2025-07-01 16:33:23,644 | INFO     | extracted standard info from prmon json
[2025-07-01 12:33:57] 2025-07-01 16:33:23,644 | INFO     | extracted standard memory fields from prmon json
[2025-07-01 12:33:57] 2025-07-01 16:33:23,644 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-01 12:33:57] 2025-07-01 16:33:23,645 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-01 12:33:57] 2025-07-01 16:33:23,645 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-01 12:33:57] 2025-07-01 16:33:23,646 | INFO     | fitting pss+swap vs Time
[2025-07-01 12:33:57] 2025-07-01 16:33:23,646 | INFO     | sum of square deviations: 34277852.0
[2025-07-01 12:33:57] 2025-07-01 16:33:23,646 | INFO     | sum of deviations: -1622364631.5000002
[2025-07-01 12:33:57] 2025-07-01 16:33:23,646 | INFO     | mean x: 1751386011.5
[2025-07-01 12:33:57] 2025-07-01 16:33:23,646 | INFO     | mean y: 2837319.9791666665
[2025-07-01 12:33:57] 2025-07-01 16:33:23,646 | INFO     | -- intersect: 82895625385.038
[2025-07-01 12:33:57] 2025-07-01 16:33:23,646 | INFO     | intersect: 82895625385.038
[2025-07-01 12:33:57] 2025-07-01 16:33:23,646 | INFO     | chi2: 0.06355695364912067
[2025-07-01 12:33:57] 2025-07-01 16:33:23,646 | INFO     | -- intersect: 82895625385.038
[2025-07-01 12:33:57] 2025-07-01 16:33:23,646 | INFO     | current memory leak: -47.33 B/s (using 48 data points, chi2=0.06)
[2025-07-01 12:33:57] 2025-07-01 16:33:23,647 | INFO     | could have reported an average CPU frequency of 1743 MHz (5 samples)
[2025-07-01 12:33:57] 2025-07-01 16:33:23,647 | INFO     | ..............................
[2025-07-01 12:33:57] 2025-07-01 16:33:23,647 | INFO     | . Timing measurements:
[2025-07-01 12:33:57] 2025-07-01 16:33:23,647 | INFO     | . get job = 0 s
[2025-07-01 12:33:57] 2025-07-01 16:33:23,647 | INFO     | . initial setup = 2 s
[2025-07-01 12:33:57] 2025-07-01 16:33:23,647 | INFO     | . payload setup = 5 s
[2025-07-01 12:33:57] 2025-07-01 16:33:23,647 | INFO     | . stage-in = 0 s
[2025-07-01 12:33:57] 2025-07-01 16:33:23,647 | INFO     | . payload execution = 3319 s
[2025-07-01 12:33:57] 2025-07-01 16:33:23,647 | INFO     | . stage-out = 0 s
[2025-07-01 12:33:57] 2025-07-01 16:33:23,647 | INFO     | . log creation = 0 s
[2025-07-01 12:33:57] 2025-07-01 16:33:23,647 | INFO     | ..............................
[2025-07-01 12:33:57] 2025-07-01 16:33:24,019 | INFO     | 
[2025-07-01 12:33:57] 2025-07-01 16:33:24,019 | INFO     | job summary report
[2025-07-01 12:33:57] 2025-07-01 16:33:24,019 | INFO     | --------------------------------------------------
[2025-07-01 12:33:57] 2025-07-01 16:33:24,019 | INFO     | PanDA job id: 6715257524
[2025-07-01 12:33:57] 2025-07-01 16:33:24,019 | INFO     | task id: 45418943
[2025-07-01 12:33:57] 2025-07-01 16:33:24,020 | INFO     | errors: (none)
[2025-07-01 12:33:57] 2025-07-01 16:33:24,020 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-01 12:33:57] 2025-07-01 16:33:24,020 | INFO     | pilot state: finished 
[2025-07-01 12:33:57] 2025-07-01 16:33:24,020 | INFO     | transexitcode: 0
[2025-07-01 12:33:57] 2025-07-01 16:33:24,020 | INFO     | exeerrorcode: 0
[2025-07-01 12:33:57] 2025-07-01 16:33:24,020 | INFO     | exeerrordiag: 
[2025-07-01 12:33:57] 2025-07-01 16:33:24,020 | INFO     | exitcode: 0
[2025-07-01 12:33:57] 2025-07-01 16:33:24,020 | INFO     | exitmsg: OK
[2025-07-01 12:33:57] 2025-07-01 16:33:24,020 | INFO     | cpuconsumptiontime: 33927 s
[2025-07-01 12:33:57] 2025-07-01 16:33:24,020 | INFO     | nevents: 400
[2025-07-01 12:33:57] 2025-07-01 16:33:24,021 | INFO     | neventsw: 0
[2025-07-01 12:33:57] 2025-07-01 16:33:24,021 | INFO     | pid: 4168947
[2025-07-01 12:33:57] 2025-07-01 16:33:24,021 | INFO     | pgrp: 4168947
[2025-07-01 12:33:57] 2025-07-01 16:33:24,021 | INFO     | corecount: 12
[2025-07-01 12:33:57] 2025-07-01 16:33:24,021 | INFO     | event service: False
[2025-07-01 12:33:57] 2025-07-01 16:33:24,021 | INFO     | sizes: {0: 2366580, 3: 2366842, 11: 2366870, 3328: 2401536, 3329: 2401536, 3339: 2401762}
[2025-07-01 12:33:57] 2025-07-01 16:33:24,021 | INFO     | --------------------------------------------------
[2025-07-01 12:33:57] 2025-07-01 16:33:24,021 | INFO     | 
[2025-07-01 12:33:57] 2025-07-01 16:33:24,021 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-07-01 12:33:57] 2025-07-01 16:33:24,041 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,041 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,041 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,042 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,042 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,042 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,042 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,042 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,042 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,042 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,042 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,043 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,043 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,043 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,043 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,043 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,043 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-01 12:33:57] 2025-07-01 16:33:24,043 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,043 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-01 12:33:57] 2025-07-01 16:33:24,044 | INFO     | job 6715257524 has completed (purged errors)
[2025-07-01 12:33:57] 2025-07-01 16:33:24,044 | INFO     | overall cleanup function is called
[2025-07-01 12:33:57] 2025-07-01 16:33:25,052 | INFO     | --- collectZombieJob: --- 10, [4168947]
[2025-07-01 12:33:57] 2025-07-01 16:33:25,053 | INFO     | zombie collector waiting for pid 4168947
[2025-07-01 12:33:57] 2025-07-01 16:33:25,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-01 12:33:57] 2025-07-01 16:33:25,053 | INFO     | collected zombie processes
[2025-07-01 12:33:57] 2025-07-01 16:33:25,053 | INFO     | will attempt to kill all subprocesses of pid=4168947
[2025-07-01 12:33:57] 2025-07-01 16:33:25,167 | INFO     | process IDs to be killed: [4168947] (in reverse order)
[2025-07-01 12:33:57] 2025-07-01 16:33:25,224 | WARNING  | found no corresponding commands to process id(s)
[2025-07-01 12:33:57] 2025-07-01 16:33:25,224 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-01 12:33:57] 2025-07-01 16:33:25,230 | INFO     | did not find any defunct processes belonging to 4168947
[2025-07-01 12:33:57] 2025-07-01 16:33:25,233 | INFO     | did not find any defunct processes belonging to 4168947
[2025-07-01 12:33:57] 2025-07-01 16:33:25,233 | INFO     | ready for new job
[2025-07-01 12:33:57] 2025-07-01 16:33:25,233 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-01 12:33:57] 2025-07-01 16:33:25,234 | INFO     | ***************************************
[2025-07-01 12:33:57] 2025-07-01 16:33:25,234 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-01 12:33:57] 2025-07-01 16:33:25,234 | INFO     | ***************************************
[2025-07-01 12:33:57] 2025-07-01 16:33:25,234 | INFO     | 
[2025-07-01 12:33:57] 2025-07-01 16:33:25,258 | INFO     | architecture information:
[2025-07-01 12:33:57] 2025-07-01 16:33:25,258 | INFO     | executing command: cat /etc/os-release
[2025-07-01 12:33:57] 2025-07-01 16:33:25,270 | INFO     | cat /etc/os-release:
[2025-07-01 12:33:57] NAME="CentOS Linux"
[2025-07-01 12:33:57] VERSION="7 (Core)"
[2025-07-01 12:33:57] ID="centos"
[2025-07-01 12:33:57] ID_LIKE="rhel fedora"
[2025-07-01 12:33:57] VERSION_ID="7"
[2025-07-01 12:33:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-01 12:33:57] ANSI_COLOR="0;31"
[2025-07-01 12:33:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-01 12:33:57] HOME_URL="https://www.centos.org/"
[2025-07-01 12:33:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-01 12:33:57] 
[2025-07-01 12:33:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-01 12:33:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-01 12:33:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-01 12:33:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-01 12:33:57] 
[2025-07-01 12:33:57] 2025-07-01 16:33:25,270 | INFO     | ***************************************
[2025-07-01 12:33:57] 2025-07-01 16:33:25,773 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-07-01 12:33:57] 2025-07-01 16:33:25,788 | INFO     | sufficient remaining disk space (403853803520 B)
[2025-07-01 12:33:57] 2025-07-01 16:33:25,788 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-01 12:33:57] 2025-07-01 16:33:25,788 | INFO     | current server update state: UPDATING_FINAL
[2025-07-01 12:33:57] 2025-07-01 16:33:25,788 | INFO     | update_server=False
[2025-07-01 12:33:57] 2025-07-01 16:33:25,788 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-01 12:33:57] 2025-07-01 16:33:25,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-01 12:33:57] 2025-07-01 16:33:25,843 | INFO     | aborting loop
[2025-07-01 12:33:57] 2025-07-01 16:33:26,069 | INFO     | all data control threads have been joined
[2025-07-01 12:33:57] 2025-07-01 16:33:26,079 | INFO     | all payload control threads have been joined
[2025-07-01 12:33:57] 2025-07-01 16:33:26,123 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-01 12:33:57] 2025-07-01 16:33:26,793 | INFO     | [job] retrieve thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:26,848 | INFO     | [job] job monitor thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:26,851 | INFO     | [payload] validate_pre thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:27,018 | INFO     | [payload] execute_payloads thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:27,074 | INFO     | [data] control thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:27,085 | INFO     | [payload] control thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:27,162 | INFO     | [data] copytool_in thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:27,372 | INFO     | all job control threads have been joined
[2025-07-01 12:33:57] 2025-07-01 16:33:27,532 | INFO     | [payload] failed_post thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:28,038 | INFO     | [payload] validate_post thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:28,117 | INFO     | [job] validate thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:28,129 | INFO     | [data] copytool_out thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:28,183 | INFO     | [job] create_data_payload thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:28,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-01 12:33:57] 2025-07-01 16:33:28,378 | INFO     | [job] control thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:28,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-01 12:33:57] 2025-07-01 16:33:29,702 | INFO     | [job] queue monitor thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:32,339 | INFO     | [data] queue_monitor thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:35,884 | INFO     | job.realtimelogging is not enabled
[2025-07-01 12:33:57] 2025-07-01 16:33:36,889 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-01 12:33:57] 2025-07-01 16:33:38,740 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140331807639360)>', '<ExcThread(monitor, started 140331513263872)>']
[2025-07-01 12:33:57] 2025-07-01 16:33:43,765 | INFO     | all workflow threads have been joined
[2025-07-01 12:33:57] 2025-07-01 16:33:43,765 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-01 12:33:57] 2025-07-01 16:33:43,766 | INFO     | traces error code: 0
[2025-07-01 12:33:57] 2025-07-01 16:33:43,766 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-01 12:33:57] 2025-07-01 16:33:57,012 | INFO     | PID=4161924 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-01 12:33:57] 2025-07-01 16:33:57,013 | INFO     | .. there are 2 such processes running
[2025-07-01 12:33:57] 2025-07-01 16:33:57,013 | INFO     | found 0 job(s) in 20 queues
[2025-07-01 12:33:57] 2025-07-01 16:33:57,013 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-01 12:33:57] 2025-07-01 16:33:57,013 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-01 12:33:57] 2025-07-01 16:33:57,013 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-01 12:33:57] 2025-07-01 16:33:57,013 | INFO     | [monitor] control thread has ended
[2025-07-01 12:33:57] 2025-07-01 16:33:57,087 [wrapper] ==== pilot stdout END ====
[2025-07-01 12:33:57] 2025-07-01 16:33:57,090 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-01 12:33:57] 2025-07-01 16:33:57,093 [wrapper] pilotpid: 4161924
[2025-07-01 12:33:57] 2025-07-01 16:33:57,095 [wrapper] Pilot exit status: 0
[2025-07-01 12:33:57] 2025-07-01 16:33:57,106 [wrapper] pandaids: 6715257524
[2025-07-01 12:33:57] 2025-07-01 16:33:57,140 [wrapper] cleanup supervisor_pilot   15809 4161925
[2025-07-01 12:33:57] 2025-07-01 16:33:57,142 [wrapper] Test setup, not cleaning
[2025-07-01 12:33:57] 2025-07-01 16:33:57,146 [wrapper] apfmon messages muted
[2025-07-01 12:33:57] 2025-07-01 16:33:57,148 [wrapper] ==== wrapper stdout END ====
[2025-07-01 12:33:57] 2025-07-01 16:33:57,150 [wrapper] ==== wrapper stderr END ====
[2025-07-01 12:33:57]  *** Error codes and diagnostics ***
[2025-07-01 12:33:57]     "exeErrorCode": 0,
[2025-07-01 12:33:57]     "exeErrorDiag": "",
[2025-07-01 12:33:57]     "pilotErrorCode": 0,
[2025-07-01 12:33:57]     "pilotErrorDiag": "",
[2025-07-01 12:33:57]  *** Listing of results directory ***
[2025-07-01 12:33:57] total 432164
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc    530466 Jun 30 20:42 pilot3.tar.gz
[2025-07-01 12:33:57] -rwx------ 1 boinc boinc     36292 Jun 30 21:26 runpilot2-wrapper.sh
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc      5112 Jun 30 21:26 queuedata.json
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc       100 Jul  1 11:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-01 12:33:57] -rwxr-xr-x 1 boinc boinc      7986 Jul  1 11:37 run_atlas
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc       105 Jul  1 11:37 job.xml
[2025-07-01 12:33:57] -rw-r--r-- 2 boinc boinc 249057695 Jul  1 11:37 EVNT.45418941._000015.pool.root.1
[2025-07-01 12:33:57] -rw-r--r-- 2 boinc boinc     15095 Jul  1 11:37 start_atlas.sh
[2025-07-01 12:33:57] drwxrwx--x 2 boinc boinc      4096 Jul  1 11:37 shared
[2025-07-01 12:33:57] -rw-r--r-- 2 boinc boinc    542894 Jul  1 11:37 input.tar.gz
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc      7599 Jul  1 11:37 init_data.xml
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc         0 Jul  1 11:37 boinc_lockfile
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc      2581 Jul  1 11:37 pandaJob.out
[2025-07-01 12:33:57] -rw------- 1 boinc boinc    969787 Jul  1 11:37 agis_schedconf.cvmfs.json
[2025-07-01 12:33:57] -rw------- 1 boinc boinc   1574086 Jul  1 11:37 agis_ddmendpoints.agis.ALL.json
[2025-07-01 12:33:57] drwx------ 4 boinc boinc      4096 Jul  1 11:37 pilot3
[2025-07-01 12:33:57] -rw------- 1 boinc boinc 188236202 Jul  1 12:32 HITS.45418943._000353.pool.root.1
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc       530 Jul  1 12:32 boinc_task_state.xml
[2025-07-01 12:33:57] -rw------- 1 boinc boinc        95 Jul  1 12:33 pilot_heartbeat.json
[2025-07-01 12:33:57] -rw------- 1 boinc boinc      1024 Jul  1 12:33 memory_monitor_summary.json
[2025-07-01 12:33:57] -rw------- 1 boinc boinc    339869 Jul  1 12:33 log.45418943._000353.job.log.tgz.1
[2025-07-01 12:33:57] -rw------- 1 boinc boinc      7770 Jul  1 12:33 heartbeat.json
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc      8192 Jul  1 12:33 boinc_mmap_file
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc        27 Jul  1 12:33 wrapper_checkpoint.txt
[2025-07-01 12:33:57] -rw------- 1 boinc boinc       822 Jul  1 12:33 pilotlog.txt
[2025-07-01 12:33:57] -rw------- 1 boinc boinc    353553 Jul  1 12:33 log.45418943._000353.job.log.1
[2025-07-01 12:33:57] -rw------- 1 boinc boinc       357 Jul  1 12:33 output.list
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc       620 Jul  1 12:33 runtime_log
[2025-07-01 12:33:57] -rw------- 1 boinc boinc    716800 Jul  1 12:33 result.tar.gz
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc      8729 Jul  1 12:33 runtime_log.err
[2025-07-01 12:33:57] -rw------- 1 boinc boinc       649 Jul  1 12:33 crRNDmKweq7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYz5KDm370XDo.diag
[2025-07-01 12:33:57] -rw-r--r-- 1 boinc boinc     21613 Jul  1 12:33 stderr.txt
[2025-07-01 12:33:57] HITS file was successfully produced:
[2025-07-01 12:33:57] -rw------- 1 boinc boinc 188236202 Jul  1 12:32 shared/HITS.pool.root.1
[2025-07-01 12:33:57]  *** Contents of shared directory: ***
[2025-07-01 12:33:57] total 428308
[2025-07-01 12:33:57] -rw-r--r-- 2 boinc boinc 249057695 Jul  1 11:37 ATLAS.root_0
[2025-07-01 12:33:57] -rw-r--r-- 2 boinc boinc     15095 Jul  1 11:37 start_atlas.sh
[2025-07-01 12:33:57] -rw-r--r-- 2 boinc boinc    542894 Jul  1 11:37 input.tar.gz
[2025-07-01 12:33:57] -rw------- 1 boinc boinc 188236202 Jul  1 12:32 HITS.pool.root.1
[2025-07-01 12:33:57] -rw------- 1 boinc boinc    716800 Jul  1 12:33 result.tar.gz
12:33:58 (4158005): run_atlas exited; CPU time 33967.609249
12:33:58 (4158005): called boinc_finish(0)

</stderr_txt>
]]>

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