Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
02:57:43 (3616689): wrapper (7.7.26015): starting
02:57:43 (3616689): wrapper: running run_atlas (--nthreads 12)
[2025-07-01 02:57:43] Arguments: --nthreads 12
[2025-07-01 02:57:43] Threads: 12
[2025-07-01 02:57:43] Checking for CVMFS
[2025-07-01 02:57:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-01 02:57:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-01 02:57:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-01 02:57:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-01 02:57:44] 2.12.7.0 2995445 561 70112 147796 0 186 2793904 4194305 0 130560 0 1356231 99.995 25354 634 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2025-07-01 02:57:44] CVMFS is ok
[2025-07-01 02:57:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-01 02:57:44] Checking for apptainer binary...
[2025-07-01 02:57:44] apptainer is not installed, using version from CVMFS
[2025-07-01 02:57:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-01 02:57:44] Trebeth
[2025-07-01 02:57:44] apptainer works
[2025-07-01 02:57:44] Set ATHENA_PROC_NUMBER=12
[2025-07-01 02:57:44] Set ATHENA_CORE_NUMBER=12
[2025-07-01 02:57:44] Starting ATLAS job with PandaID=6714824074
[2025-07-01 02:57:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-01 03:19:22]  *** The last 200 lines of the pilot log: ***
[2025-07-01 03:19:22] 2025-07-01 07:18:49,790 | INFO     | extracted standard memory fields from prmon json
[2025-07-01 03:19:22] 2025-07-01 07:18:49,790 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-01 03:19:22] 2025-07-01 07:18:49,791 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-01 03:19:22] 2025-07-01 07:18:49,791 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | WARNING  | wrong length of table data, x=[1751353463.0, 1751353524.0], y=[460518.0, 460518.0] (must be same and length>=4)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | could have reported an average CPU frequency of 1301 MHz (4 samples)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | ..............................
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . Timing measurements:
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . get job = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . initial setup = 61 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . payload setup = 5 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . stage-in = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | . payload execution = 498 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | . stage-out = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | . log creation = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | ..............................
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-6714824074/pilotlog.txt
[2025-07-01 03:19:22] 2025-07-01 07:18:49,806 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-01 03:19:22] - Log from pilotlog.txt -
[2025-07-01 03:19:22] 2025-07-01 07:18:49,789 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6714824074/memory_monitor_summary.json (trf name=prmon)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,789 | INFO     | extracted standard info from prmon json
[2025-07-01 03:19:22] 2025-07-01 07:18:49,790 | INFO     | extracted standard memory fields from prmon json
[2025-07-01 03:19:22] 2025-07-01 07:18:49,790 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-01 03:19:22] 2025-07-01 07:18:49,791 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-01 03:19:22] 2025-07-01 07:18:49,791 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | WARNING  | wrong length of table data, x=[1751353463.0, 1751353524.0], y=[460518.0, 460518.0] (must be same and length>=4)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | could have reported an average CPU frequency of 1301 MHz (4 samples)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | ..............................
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . Timing measurements:
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . get job = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . initial setup = 61 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . payload setup = 5 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . stage-in = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | . payload execution = 498 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | . stage-out = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | . log creation = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | ..............................
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-6714824074/pilotlog.txt
[2025-07-01 03:19:22] 2025-07-01 07:18:49,806 | WARNING  | 
[2025-07-01 03:19:22] [begin log extracts]
[2025-07-01 03:19:22] - Log from pilotlog.txt -
[2025-07-01 03:19:22] 2025-07-01 07:18:49,789 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6714824074/memory_monitor_summary.json (trf name=prmon)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,789 | INFO     | extracted standard info from prmon json
[2025-07-01 03:19:22] 2025-07-01 07:18:49,790 | INFO     | extracted standard memory fields from prmon json
[2025-07-01 03:19:22] 2025-07-01 07:18:49,790 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-01 03:19:22] 2025-07-01 07:18:49,791 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-01 03:19:22] 2025-07-01 07:18:49,791 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | WARNING  | wrong length of table data, x=[1751353463.0, 1751353524.0], y=[460518.0, 460518.0] (must be same and length>=4)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | could have reported an average CPU frequency of 1301 MHz (4 samples)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | ..............................
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . Timing measurements:
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . get job = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . initial setup = 61 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . payload setup = 5 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,792 | INFO     | . stage-in = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | . payload execution = 498 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | . stage-out = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | . log creation = 0 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | ..............................
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-01 03:19:22] 2025-07-01 07:18:49,793 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-6714824074/pilotlog.txt
[2025-07-01 03:19:22] [end log extracts]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,807 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,808 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | 
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | job summary report
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | --------------------------------------------------
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | PanDA job id: 6714824074
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | task id: 45418292
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-01 03:07:28,957 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | pilot state: failed 
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | transexitcode: 65
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | exeerrorcode: 65
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | exitcode: 65
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | cpuconsumptiontime: 18 s
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | nevents: 0
[2025-07-01 03:19:22] 2025-07-01 07:18:49,863 | INFO     | neventsw: 0
[2025-07-01 03:19:22] 2025-07-01 07:18:49,864 | INFO     | pid: 3638654
[2025-07-01 03:19:22] 2025-07-01 07:18:49,864 | INFO     | pgrp: 3638654
[2025-07-01 03:19:22] 2025-07-01 07:18:49,864 | INFO     | corecount: 12
[2025-07-01 03:19:22] 2025-07-01 07:18:49,864 | INFO     | event service: False
[2025-07-01 03:19:22] 2025-07-01 07:18:49,864 | INFO     | sizes: {0: 2366585, 4: 2366847, 11: 2366875, 507: 2390537, 508: 2390541, 509: 2395083, 1181: 2395221}
[2025-07-01 03:19:22] 2025-07-01 07:18:49,864 | INFO     | --------------------------------------------------
[2025-07-01 03:19:22] 2025-07-01 07:18:49,864 | INFO     | 
[2025-07-01 03:19:22] 2025-07-01 07:18:49,864 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-07-01 03:19:22] 2025-07-01 07:18:49,883 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,883 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,883 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,883 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,884 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,884 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-01 03:19:22] 2025-07-01 07:18:49,885 | INFO     | job 6714824074 has completed (purged errors)
[2025-07-01 03:19:22] 2025-07-01 07:18:49,886 | INFO     | overall cleanup function is called
[2025-07-01 03:19:22] 2025-07-01 07:18:50,892 | INFO     | --- collectZombieJob: --- 10, [3638654]
[2025-07-01 03:19:22] 2025-07-01 07:18:50,892 | INFO     | zombie collector waiting for pid 3638654
[2025-07-01 03:19:22] 2025-07-01 07:18:50,893 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-01 03:19:22] 2025-07-01 07:18:50,893 | INFO     | collected zombie processes
[2025-07-01 03:19:22] 2025-07-01 07:18:50,893 | INFO     | will attempt to kill all subprocesses of pid=3638654
[2025-07-01 03:19:22] 2025-07-01 07:18:51,024 | INFO     | process IDs to be killed: [3638654] (in reverse order)
[2025-07-01 03:19:22] 2025-07-01 07:18:51,078 | WARNING  | found no corresponding commands to process id(s)
[2025-07-01 03:19:22] 2025-07-01 07:18:51,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-01 03:19:22] 2025-07-01 07:18:51,085 | INFO     | did not find any defunct processes belonging to 3638654
[2025-07-01 03:19:22] 2025-07-01 07:18:51,089 | INFO     | did not find any defunct processes belonging to 3638654
[2025-07-01 03:19:22] 2025-07-01 07:18:51,089 | INFO     | ready for new job
[2025-07-01 03:19:22] 2025-07-01 07:18:51,089 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-01 03:19:22] 2025-07-01 07:18:51,090 | INFO     | ***************************************
[2025-07-01 03:19:22] 2025-07-01 07:18:51,090 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-01 03:19:22] 2025-07-01 07:18:51,090 | INFO     | ***************************************
[2025-07-01 03:19:22] 2025-07-01 07:18:51,090 | INFO     | 
[2025-07-01 03:19:22] 2025-07-01 07:18:51,114 | INFO     | architecture information:
[2025-07-01 03:19:22] 2025-07-01 07:18:51,115 | INFO     | executing command: cat /etc/os-release
[2025-07-01 03:19:22] 2025-07-01 07:18:51,126 | INFO     | cat /etc/os-release:
[2025-07-01 03:19:22] NAME="CentOS Linux"
[2025-07-01 03:19:22] VERSION="7 (Core)"
[2025-07-01 03:19:22] ID="centos"
[2025-07-01 03:19:22] ID_LIKE="rhel fedora"
[2025-07-01 03:19:22] VERSION_ID="7"
[2025-07-01 03:19:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-01 03:19:22] ANSI_COLOR="0;31"
[2025-07-01 03:19:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-01 03:19:22] HOME_URL="https://www.centos.org/"
[2025-07-01 03:19:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-01 03:19:22] 
[2025-07-01 03:19:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-01 03:19:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-01 03:19:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-01 03:19:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-01 03:19:22] 
[2025-07-01 03:19:22] 2025-07-01 07:18:51,126 | INFO     | ***************************************
[2025-07-01 03:19:22] 2025-07-01 07:18:51,629 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-07-01 03:19:22] 2025-07-01 07:18:51,646 | INFO     | sufficient remaining disk space (405411987456 B)
[2025-07-01 03:19:22] 2025-07-01 07:18:51,646 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-01 03:19:22] 2025-07-01 07:18:51,646 | INFO     | current server update state: UPDATING_FINAL
[2025-07-01 03:19:22] 2025-07-01 07:18:51,646 | INFO     | update_server=False
[2025-07-01 03:19:22] 2025-07-01 07:18:51,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-01 03:19:22] 2025-07-01 07:18:51,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-01 03:19:22] 2025-07-01 07:18:51,647 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-01 03:19:22] 2025-07-01 07:18:51,647 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-01 03:19:22] 2025-07-01 07:18:51,648 | INFO     | aborting loop
[2025-07-01 03:19:22] 2025-07-01 07:18:51,688 | INFO     | all job control threads have been joined
[2025-07-01 03:19:22] 2025-07-01 07:18:51,696 | INFO     | all data control threads have been joined
[2025-07-01 03:19:22] 2025-07-01 07:18:52,033 | INFO     | all payload control threads have been joined
[2025-07-01 03:19:22] 2025-07-01 07:18:52,650 | INFO     | [job] retrieve thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:52,651 | INFO     | [job] job monitor thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:52,652 | INFO     | [job] queue monitor thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:52,694 | INFO     | [job] control thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:52,702 | INFO     | [data] control thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:53,038 | INFO     | [payload] control thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:53,059 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:53,228 | INFO     | [payload] validate_post thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:53,324 | INFO     | [payload] execute_payloads thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:53,577 | INFO     | [data] copytool_in thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:53,653 | INFO     | [data] copytool_out thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:53,805 | INFO     | [payload] failed_post thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:53,842 | INFO     | [job] validate thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:53,961 | INFO     | [job] create_data_payload thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:54,020 | INFO     | [payload] validate_pre thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:54,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-01 03:19:22] 2025-07-01 07:18:58,864 | INFO     | [data] queue_monitor thread has finished
[2025-07-01 03:19:22] 2025-07-01 07:18:58,883 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140110765492032)>', '<ExcThread(monitor, started 140109953365760)>']
[2025-07-01 03:19:22] 2025-07-01 07:19:03,908 | INFO     | all workflow threads have been joined
[2025-07-01 03:19:22] 2025-07-01 07:19:03,909 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-01 03:19:22] 2025-07-01 07:19:03,909 | INFO     | traces error code: 0
[2025-07-01 03:19:22] 2025-07-01 07:19:03,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-01 03:19:22] 2025-07-01 07:19:22,765 | INFO     | PID=3624057 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-01 03:19:22] 2025-07-01 07:19:22,765 | INFO     | .. there are 2 such processes running
[2025-07-01 03:19:22] 2025-07-01 07:19:22,765 | INFO     | found 0 job(s) in 20 queues
[2025-07-01 03:19:22] 2025-07-01 07:19:22,765 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-01 03:19:22] 2025-07-01 07:19:22,765 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-01 03:19:22] 2025-07-01 07:19:22,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-01 03:19:22] 2025-07-01 07:19:22,766 | INFO     | [monitor] control thread has ended
[2025-07-01 03:19:22] 2025-07-01 07:19:22,845 [wrapper] ==== pilot stdout END ====
[2025-07-01 03:19:22] 2025-07-01 07:19:22,848 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-01 03:19:22] 2025-07-01 07:19:22,850 [wrapper] pilotpid: 3624057
[2025-07-01 03:19:22] 2025-07-01 07:19:22,853 [wrapper] Pilot exit status: 0
[2025-07-01 03:19:22] 2025-07-01 07:19:22,862 [wrapper] pandaids: 6714824074
[2025-07-01 03:19:22] 2025-07-01 07:19:22,894 [wrapper] cleanup supervisor_pilot 3655577 3624058
[2025-07-01 03:19:22] 2025-07-01 07:19:22,897 [wrapper] Test setup, not cleaning
[2025-07-01 03:19:22] 2025-07-01 07:19:22,900 [wrapper] apfmon messages muted
[2025-07-01 03:19:22] 2025-07-01 07:19:22,901 [wrapper] ==== wrapper stdout END ====
[2025-07-01 03:19:22] 2025-07-01 07:19:22,904 [wrapper] ==== wrapper stderr END ====
[2025-07-01 03:19:22]  *** Error codes and diagnostics ***
[2025-07-01 03:19:22]     "exeErrorCode": 65,
[2025-07-01 03:19:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-01 03:19:22]     "pilotErrorCode": 1305,
[2025-07-01 03:19:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-01 03:19:22]  *** Listing of results directory ***
[2025-07-01 03:19:22] total 245336
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc    530466 Jun 30 17:13 pilot3.tar.gz
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc      5112 Jun 30 17:32 queuedata.json
[2025-07-01 03:19:22] -rwx------ 1 boinc boinc     36292 Jun 30 17:32 runpilot2-wrapper.sh
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc       100 Jul  1 02:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-01 03:19:22] -rwxr-xr-x 1 boinc boinc      7986 Jul  1 02:57 run_atlas
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc       105 Jul  1 02:57 job.xml
[2025-07-01 03:19:22] -rw-r--r-- 2 boinc boinc     15095 Jul  1 02:57 start_atlas.sh
[2025-07-01 03:19:22] drwxrwx--x 2 boinc boinc      4096 Jul  1 02:57 shared
[2025-07-01 03:19:22] -rw-r--r-- 2 boinc boinc    542897 Jul  1 02:57 input.tar.gz
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc      7599 Jul  1 02:57 init_data.xml
[2025-07-01 03:19:22] -rw-r--r-- 2 boinc boinc 247241813 Jul  1 02:57 EVNT.45418289._000016.pool.root.1
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc         0 Jul  1 02:57 boinc_lockfile
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc      2553 Jul  1 02:57 pandaJob.out
[2025-07-01 03:19:22] -rw------- 1 boinc boinc         0 Jul  1 02:58 agis_ddmendpoints.agis.ALL.json
[2025-07-01 03:19:22] -rw------- 1 boinc boinc   1310933 Jul  1 02:58 cric_ddmendpoints.json
[2025-07-01 03:19:22] -rw------- 1 boinc boinc    970062 Jul  1 02:58 agis_schedconf.cvmfs.json
[2025-07-01 03:19:22] drwx------ 4 boinc boinc      4096 Jul  1 02:58 pilot3
[2025-07-01 03:19:22] -rw------- 1 boinc boinc       989 Jul  1 03:07 memory_monitor_summary.json
[2025-07-01 03:19:22] -rw------- 1 boinc boinc     24678 Jul  1 03:07 log.45418292._000391.job.log.tgz.1
[2025-07-01 03:19:22] -rw------- 1 boinc boinc      8400 Jul  1 03:18 heartbeat.json
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc       525 Jul  1 03:19 boinc_task_state.xml
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc        24 Jul  1 03:19 wrapper_checkpoint.txt
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc      8192 Jul  1 03:19 boinc_mmap_file
[2025-07-01 03:19:22] -rw------- 1 boinc boinc       822 Jul  1 03:19 pilotlog.txt
[2025-07-01 03:19:22] -rw------- 1 boinc boinc        95 Jul  1 03:19 pilot_heartbeat.json
[2025-07-01 03:19:22] -rw------- 1 boinc boinc    172132 Jul  1 03:19 log.45418292._000391.job.log.1
[2025-07-01 03:19:22] -rw------- 1 boinc boinc       188 Jul  1 03:19 output.list
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc       620 Jul  1 03:19 runtime_log
[2025-07-01 03:19:22] -rw------- 1 boinc boinc    215040 Jul  1 03:19 result.tar.gz
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc      8577 Jul  1 03:19 runtime_log.err
[2025-07-01 03:19:22] -rw------- 1 boinc boinc       636 Jul  1 03:19 AF0MDmKIbq7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDi5KDm9h5z3n.diag
[2025-07-01 03:19:22] -rw-r--r-- 1 boinc boinc     21646 Jul  1 03:19 stderr.txt
[2025-07-01 03:19:22] No HITS result produced
[2025-07-01 03:19:22]  *** Contents of shared directory: ***
[2025-07-01 03:19:22] total 242212
[2025-07-01 03:19:22] -rw-r--r-- 2 boinc boinc     15095 Jul  1 02:57 start_atlas.sh
[2025-07-01 03:19:22] -rw-r--r-- 2 boinc boinc    542897 Jul  1 02:57 input.tar.gz
[2025-07-01 03:19:22] -rw-r--r-- 2 boinc boinc 247241813 Jul  1 02:57 ATLAS.root_0
[2025-07-01 03:19:22] -rw------- 1 boinc boinc    215040 Jul  1 03:19 result.tar.gz
03:19:24 (3616689): run_atlas exited; CPU time 41.119880
03:19:24 (3616689): called boinc_finish(0)

</stderr_txt>
]]>

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