Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
17:36:29 (2995223): wrapper (7.7.26015): starting
17:36:29 (2995223): wrapper: running run_atlas (--nthreads 12)
[2025-06-30 17:36:29] Arguments: --nthreads 12
[2025-06-30 17:36:29] Threads: 12
[2025-06-30 17:36:29] Checking for CVMFS
[2025-06-30 17:36:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-30 17:36:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-30 17:36:33] Running cvmfs_config stat atlas.cern.ch
[2025-06-30 17:36:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-30 17:36:34] 2.12.7.0 2995445 0 25068 147780 3 1 2568186 4194304 0 130560 0 0 0.000 1291 1615 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2025-06-30 17:36:34] CVMFS is ok
[2025-06-30 17:36:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-30 17:36:34] Checking for apptainer binary...
[2025-06-30 17:36:34] apptainer is not installed, using version from CVMFS
[2025-06-30 17:36:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-30 17:36:34] Trebeth
[2025-06-30 17:36:34] apptainer works
[2025-06-30 17:36:34] Set ATHENA_PROC_NUMBER=12
[2025-06-30 17:36:34] Set ATHENA_CORE_NUMBER=12
[2025-06-30 17:36:34] Starting ATLAS job with PandaID=6714823974
[2025-06-30 17:36:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-30 18:34:39]  *** The last 200 lines of the pilot log: ***
[2025-06-30 18:34:39]  is_tar=False
[2025-06-30 18:34:39]  lfn=log.45418292._000291.job.log.tgz.1
[2025-06-30 18:34:39]  mtime=0
[2025-06-30 18:34:39]  protocol_id=None
[2025-06-30 18:34:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-30 18:34:39]  replicas=None
[2025-06-30 18:34:39]  scope=mc23_13p6TeV
[2025-06-30 18:34:39]  status=None
[2025-06-30 18:34:39]  status_code=0
[2025-06-30 18:34:39]  storage_token=
[2025-06-30 18:34:39]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6714823974/log.45418292._000291.job.log.tgz.1
[2025-06-30 18:34:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/be/log.45418292._000291.job.log.tgz.1
[2025-06-30 18:34:39]  workdir=None
[2025-06-30 18:34:39] ]
[2025-06-30 18:34:39] 2025-06-30 22:33:58,279 | INFO     | transferring file log.45418292._000291.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6714823974/log.45418292._000291.job.log.tgz.1 to /var/lib/boinc
[2025-06-30 18:34:39] 2025-06-30 22:33:58,279 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6714823974/log.45418292._000291.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.454182
[2025-06-30 18:34:39] 2025-06-30 22:33:58,291 | INFO     | adding to output.list: log.45418292._000291.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/be/log.45418292._000291.job.log.tg
[2025-06-30 18:34:39] 2025-06-30 22:33:58,292 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-30 18:34:39] 2025-06-30 22:33:58,292 | INFO     | summary of transferred files:
[2025-06-30 18:34:39] 2025-06-30 22:33:58,292 | INFO     |  -- lfn=log.45418292._000291.job.log.tgz.1, status_code=0, status=transferred
[2025-06-30 18:34:39] 2025-06-30 22:33:58,292 | INFO     | stage-out finished correctly
[2025-06-30 18:34:39] 2025-06-30 22:34:01,353 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-30 18:34:39] 2025-06-30 22:34:02,348 | WARNING  | process 3017590 can no longer be monitored (due to stat problems) - aborting
[2025-06-30 18:34:39] 2025-06-30 22:34:02,348 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6714823974/memory_monitor_summary.json (trf name=prmon)
[2025-06-30 18:34:39] 2025-06-30 22:34:02,448 | INFO     | number of running child processes to parent process 3017590: 1
[2025-06-30 18:34:39] 2025-06-30 22:34:02,448 | INFO     | maximum number of monitored processes: 6
[2025-06-30 18:34:39] 2025-06-30 22:34:03,092 | INFO     | job 6714823974 has state=finished
[2025-06-30 18:34:39] 2025-06-30 22:34:03,093 | INFO     | preparing for final server update for job 6714823974 in state='finished'
[2025-06-30 18:34:39] 2025-06-30 22:34:03,093 | INFO     | this job has now completed (state=finished)
[2025-06-30 18:34:39] 2025-06-30 22:34:03,094 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-30 18:34:39] 2025-06-30 22:34:03,094 | INFO     | log transfer has been attempted: DONE
[2025-06-30 18:34:39] 2025-06-30 22:34:03,094 | INFO     | job 6714823974 has finished - writing final server update
[2025-06-30 18:34:39] 2025-06-30 22:34:03,094 | INFO     | total number of processed events: 400 (read)
[2025-06-30 18:34:39] 2025-06-30 22:34:03,098 | INFO     | executing command: lscpu
[2025-06-30 18:34:39] 2025-06-30 22:34:03,160 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-30 18:34:39] 2025-06-30 22:34:04,951 | INFO     | monitor loop #263: job 0:6714823974 is in state 'finished'
[2025-06-30 18:34:39] 2025-06-30 22:34:04,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-30 18:34:39] 2025-06-30 22:34:06,989 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-30 18:34:39] 2025-06-30 22:34:07,001 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 1251.7697678571428
[2025-06-30 18:34:39] 2025-06-30 22:34:07,030 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6714823974/memory_monitor_summary.json (trf name=prmon)
[2025-06-30 18:34:39] 2025-06-30 22:34:07,031 | INFO     | extracted standard info from prmon json
[2025-06-30 18:34:39] 2025-06-30 22:34:07,031 | INFO     | extracted standard memory fields from prmon json
[2025-06-30 18:34:39] 2025-06-30 22:34:07,031 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-30 18:34:39] 2025-06-30 22:34:07,031 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-30 18:34:39] 2025-06-30 22:34:07,031 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-30 18:34:39] 2025-06-30 22:34:07,032 | INFO     | fitting pss+swap vs Time
[2025-06-30 18:34:39] 2025-06-30 22:34:07,033 | INFO     | sum of square deviations: 36465800.0
[2025-06-30 18:34:39] 2025-06-30 22:34:07,033 | INFO     | sum of deviations: -952309613.0000002
[2025-06-30 18:34:39] 2025-06-30 22:34:07,033 | INFO     | mean x: 1751321202.0
[2025-06-30 18:34:39] 2025-06-30 22:34:07,033 | INFO     | mean y: 2788735.7346938774
[2025-06-30 18:34:39] 2025-06-30 22:34:07,033 | INFO     | -- intersect: 45738793872.4742
[2025-06-30 18:34:39] 2025-06-30 22:34:07,033 | INFO     | intersect: 45738793872.4742
[2025-06-30 18:34:39] 2025-06-30 22:34:07,033 | INFO     | chi2: 0.12982048849843503
[2025-06-30 18:34:39] 2025-06-30 22:34:07,033 | INFO     | -- intersect: 45738793872.4742
[2025-06-30 18:34:39] 2025-06-30 22:34:07,033 | INFO     | current memory leak: -26.12 B/s (using 49 data points, chi2=0.13)
[2025-06-30 18:34:39] 2025-06-30 22:34:07,034 | INFO     | could have reported an average CPU frequency of 1488 MHz (5 samples)
[2025-06-30 18:34:39] 2025-06-30 22:34:07,034 | INFO     | ..............................
[2025-06-30 18:34:39] 2025-06-30 22:34:07,034 | INFO     | . Timing measurements:
[2025-06-30 18:34:39] 2025-06-30 22:34:07,034 | INFO     | . get job = 0 s
[2025-06-30 18:34:39] 2025-06-30 22:34:07,034 | INFO     | . initial setup = 2 s
[2025-06-30 18:34:39] 2025-06-30 22:34:07,034 | INFO     | . payload setup = 6 s
[2025-06-30 18:34:39] 2025-06-30 22:34:07,034 | INFO     | . stage-in = 0 s
[2025-06-30 18:34:39] 2025-06-30 22:34:07,034 | INFO     | . payload execution = 3403 s
[2025-06-30 18:34:39] 2025-06-30 22:34:07,034 | INFO     | . stage-out = 0 s
[2025-06-30 18:34:39] 2025-06-30 22:34:07,034 | INFO     | . log creation = 0 s
[2025-06-30 18:34:39] 2025-06-30 22:34:07,034 | INFO     | ..............................
[2025-06-30 18:34:39] 2025-06-30 22:34:07,079 | INFO     | 
[2025-06-30 18:34:39] 2025-06-30 22:34:07,080 | INFO     | job summary report
[2025-06-30 18:34:39] 2025-06-30 22:34:07,080 | INFO     | --------------------------------------------------
[2025-06-30 18:34:39] 2025-06-30 22:34:07,080 | INFO     | PanDA job id: 6714823974
[2025-06-30 18:34:39] 2025-06-30 22:34:07,080 | INFO     | task id: 45418292
[2025-06-30 18:34:39] 2025-06-30 22:34:07,080 | INFO     | errors: (none)
[2025-06-30 18:34:39] 2025-06-30 22:34:07,080 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-30 18:34:39] 2025-06-30 22:34:07,080 | INFO     | pilot state: finished 
[2025-06-30 18:34:39] 2025-06-30 22:34:07,081 | INFO     | transexitcode: 0
[2025-06-30 18:34:39] 2025-06-30 22:34:07,081 | INFO     | exeerrorcode: 0
[2025-06-30 18:34:39] 2025-06-30 22:34:07,081 | INFO     | exeerrordiag: 
[2025-06-30 18:34:39] 2025-06-30 22:34:07,081 | INFO     | exitcode: 0
[2025-06-30 18:34:39] 2025-06-30 22:34:07,081 | INFO     | exitmsg: OK
[2025-06-30 18:34:39] 2025-06-30 22:34:07,081 | INFO     | cpuconsumptiontime: 34352 s
[2025-06-30 18:34:39] 2025-06-30 22:34:07,081 | INFO     | nevents: 400
[2025-06-30 18:34:39] 2025-06-30 22:34:07,081 | INFO     | neventsw: 0
[2025-06-30 18:34:39] 2025-06-30 22:34:07,081 | INFO     | pid: 3017590
[2025-06-30 18:34:39] 2025-06-30 22:34:07,082 | INFO     | pgrp: 3017590
[2025-06-30 18:34:39] 2025-06-30 22:34:07,082 | INFO     | corecount: 12
[2025-06-30 18:34:39] 2025-06-30 22:34:07,082 | INFO     | event service: False
[2025-06-30 18:34:39] 2025-06-30 22:34:07,082 | INFO     | sizes: {0: 2366585, 4: 2366847, 10: 2366875, 3414: 2392553, 3416: 2401565, 3419: 2401621, 3424: 2401975}
[2025-06-30 18:34:39] 2025-06-30 22:34:07,082 | INFO     | --------------------------------------------------
[2025-06-30 18:34:39] 2025-06-30 22:34:07,082 | INFO     | 
[2025-06-30 18:34:39] 2025-06-30 22:34:07,082 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-06-30 18:34:39] 2025-06-30 22:34:07,102 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,102 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,103 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,103 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,103 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,103 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,103 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,103 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,103 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,103 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,103 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,104 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,104 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,104 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,104 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,104 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,104 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,104 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-30 18:34:39] 2025-06-30 22:34:07,104 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,104 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-30 18:34:39] 2025-06-30 22:34:07,105 | INFO     | job 6714823974 has completed (purged errors)
[2025-06-30 18:34:39] 2025-06-30 22:34:07,105 | INFO     | overall cleanup function is called
[2025-06-30 18:34:39] 2025-06-30 22:34:08,113 | INFO     | --- collectZombieJob: --- 10, [3017590]
[2025-06-30 18:34:39] 2025-06-30 22:34:08,113 | INFO     | zombie collector waiting for pid 3017590
[2025-06-30 18:34:39] 2025-06-30 22:34:08,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-30 18:34:39] 2025-06-30 22:34:08,114 | INFO     | collected zombie processes
[2025-06-30 18:34:39] 2025-06-30 22:34:08,114 | INFO     | will attempt to kill all subprocesses of pid=3017590
[2025-06-30 18:34:39] 2025-06-30 22:34:08,224 | INFO     | process IDs to be killed: [3017590] (in reverse order)
[2025-06-30 18:34:39] 2025-06-30 22:34:08,280 | WARNING  | found no corresponding commands to process id(s)
[2025-06-30 18:34:39] 2025-06-30 22:34:08,280 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-30 18:34:39] 2025-06-30 22:34:08,287 | INFO     | did not find any defunct processes belonging to 3017590
[2025-06-30 18:34:39] 2025-06-30 22:34:08,291 | INFO     | did not find any defunct processes belonging to 3017590
[2025-06-30 18:34:39] 2025-06-30 22:34:08,292 | INFO     | ready for new job
[2025-06-30 18:34:39] 2025-06-30 22:34:08,292 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-30 18:34:39] 2025-06-30 22:34:08,292 | INFO     | ***************************************
[2025-06-30 18:34:39] 2025-06-30 22:34:08,293 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-30 18:34:39] 2025-06-30 22:34:08,293 | INFO     | ***************************************
[2025-06-30 18:34:39] 2025-06-30 22:34:08,293 | INFO     | 
[2025-06-30 18:34:39] 2025-06-30 22:34:08,314 | INFO     | architecture information:
[2025-06-30 18:34:39] 2025-06-30 22:34:08,315 | INFO     | executing command: cat /etc/os-release
[2025-06-30 18:34:39] 2025-06-30 22:34:08,326 | INFO     | cat /etc/os-release:
[2025-06-30 18:34:39] NAME="CentOS Linux"
[2025-06-30 18:34:39] VERSION="7 (Core)"
[2025-06-30 18:34:39] ID="centos"
[2025-06-30 18:34:39] ID_LIKE="rhel fedora"
[2025-06-30 18:34:39] VERSION_ID="7"
[2025-06-30 18:34:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-30 18:34:39] ANSI_COLOR="0;31"
[2025-06-30 18:34:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-30 18:34:39] HOME_URL="https://www.centos.org/"
[2025-06-30 18:34:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-30 18:34:39] 
[2025-06-30 18:34:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-30 18:34:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-30 18:34:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-30 18:34:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-30 18:34:39] 
[2025-06-30 18:34:39] 2025-06-30 22:34:08,327 | INFO     | ***************************************
[2025-06-30 18:34:39] 2025-06-30 22:34:08,830 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-06-30 18:34:39] 2025-06-30 22:34:08,844 | INFO     | sufficient remaining disk space (402194956288 B)
[2025-06-30 18:34:39] 2025-06-30 22:34:08,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-30 18:34:39] 2025-06-30 22:34:08,845 | INFO     | current server update state: UPDATING_FINAL
[2025-06-30 18:34:39] 2025-06-30 22:34:08,845 | INFO     | update_server=False
[2025-06-30 18:34:39] 2025-06-30 22:34:08,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-30 18:34:39] 2025-06-30 22:34:08,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-30 18:34:39] 2025-06-30 22:34:08,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-30 18:34:39] 2025-06-30 22:34:08,846 | INFO     | aborting loop
[2025-06-30 18:34:39] 2025-06-30 22:34:08,853 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-30 18:34:39] 2025-06-30 22:34:09,402 | INFO     | all job control threads have been joined
[2025-06-30 18:34:39] 2025-06-30 22:34:09,594 | INFO     | all data control threads have been joined
[2025-06-30 18:34:39] 2025-06-30 22:34:09,850 | INFO     | [job] retrieve thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:09,851 | INFO     | [job] queue monitor thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:09,852 | INFO     | [job] job monitor thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:09,891 | INFO     | [data] copytool_in thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:10,099 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:10,131 | INFO     | all payload control threads have been joined
[2025-06-30 18:34:39] 2025-06-30 22:34:10,310 | INFO     | [job] validate thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:10,370 | INFO     | [payload] validate_post thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:10,407 | INFO     | [job] control thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:10,452 | INFO     | [job] create_data_payload thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:10,569 | INFO     | [payload] validate_pre thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:10,599 | INFO     | [data] control thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:10,637 | INFO     | [payload] failed_post thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:10,859 | INFO     | [data] copytool_out thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:11,009 | INFO     | [payload] execute_payloads thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:11,137 | INFO     | [payload] control thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:11,910 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-30 18:34:39] 2025-06-30 22:34:15,916 | INFO     | [data] queue_monitor thread has finished
[2025-06-30 18:34:39] 2025-06-30 22:34:17,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140479958701888)>', '<ExcThread(monitor, started 140479354091264)>']
[2025-06-30 18:34:39] 2025-06-30 22:34:22,697 | INFO     | all workflow threads have been joined
[2025-06-30 18:34:39] 2025-06-30 22:34:22,698 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-30 18:34:39] 2025-06-30 22:34:22,698 | INFO     | traces error code: 0
[2025-06-30 18:34:39] 2025-06-30 22:34:22,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-30 18:34:39] 2025-06-30 22:34:39,126 | INFO     | PID=3003689 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-30 18:34:39] 2025-06-30 22:34:39,127 | INFO     | .. there are 2 such processes running
[2025-06-30 18:34:39] 2025-06-30 22:34:39,127 | INFO     | found 0 job(s) in 20 queues
[2025-06-30 18:34:39] 2025-06-30 22:34:39,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-30 18:34:39] 2025-06-30 22:34:39,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-30 18:34:39] 2025-06-30 22:34:39,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-30 18:34:39] 2025-06-30 22:34:39,127 | INFO     | [monitor] control thread has ended
[2025-06-30 18:34:39] 2025-06-30 22:34:39,196 [wrapper] ==== pilot stdout END ====
[2025-06-30 18:34:39] 2025-06-30 22:34:39,199 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-30 18:34:39] 2025-06-30 22:34:39,202 [wrapper] pilotpid: 3003689
[2025-06-30 18:34:39] 2025-06-30 22:34:39,204 [wrapper] Pilot exit status: 0
[2025-06-30 18:34:39] 2025-06-30 22:34:39,215 [wrapper] pandaids: 6714823974
[2025-06-30 18:34:39] 2025-06-30 22:34:39,251 [wrapper] cleanup supervisor_pilot 3045083 3003691
[2025-06-30 18:34:39] 2025-06-30 22:34:39,253 [wrapper] Test setup, not cleaning
[2025-06-30 18:34:39] 2025-06-30 22:34:39,256 [wrapper] apfmon messages muted
[2025-06-30 18:34:39] 2025-06-30 22:34:39,260 [wrapper] ==== wrapper stdout END ====
[2025-06-30 18:34:39] 2025-06-30 22:34:39,262 [wrapper] ==== wrapper stderr END ====
[2025-06-30 18:34:39]  *** Error codes and diagnostics ***
[2025-06-30 18:34:39]     "exeErrorCode": 0,
[2025-06-30 18:34:39]     "exeErrorDiag": "",
[2025-06-30 18:34:39]     "pilotErrorCode": 0,
[2025-06-30 18:34:39]     "pilotErrorDiag": "",
[2025-06-30 18:34:39]  *** Listing of results directory ***
[2025-06-30 18:34:39] total 437920
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc    530466 Jun 30 17:13 pilot3.tar.gz
[2025-06-30 18:34:39] -rwx------ 1 boinc boinc     36292 Jun 30 17:32 runpilot2-wrapper.sh
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc      5112 Jun 30 17:32 queuedata.json
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc       100 Jun 30 17:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-30 18:34:39] -rwxr-xr-x 1 boinc boinc      7986 Jun 30 17:36 run_atlas
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc       105 Jun 30 17:36 job.xml
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc      7599 Jun 30 17:36 init_data.xml
[2025-06-30 18:34:39] -rw-r--r-- 2 boinc boinc 254334209 Jun 30 17:36 EVNT.45418289._000012.pool.root.1
[2025-06-30 18:34:39] -rw-r--r-- 2 boinc boinc     15095 Jun 30 17:36 start_atlas.sh
[2025-06-30 18:34:39] drwxrwx--x 2 boinc boinc      4096 Jun 30 17:36 shared
[2025-06-30 18:34:39] -rw-r--r-- 2 boinc boinc    542892 Jun 30 17:36 input.tar.gz
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc         0 Jun 30 17:36 boinc_lockfile
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc      2553 Jun 30 17:36 pandaJob.out
[2025-06-30 18:34:39] -rw------- 1 boinc boinc    970049 Jun 30 17:36 agis_schedconf.cvmfs.json
[2025-06-30 18:34:39] -rw------- 1 boinc boinc   1574086 Jun 30 17:36 agis_ddmendpoints.agis.ALL.json
[2025-06-30 18:34:39] drwx------ 4 boinc boinc      4096 Jun 30 17:36 pilot3
[2025-06-30 18:34:39] -rw------- 1 boinc boinc 188806781 Jun 30 18:33 HITS.45418292._000291.pool.root.1
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc       529 Jun 30 18:33 boinc_task_state.xml
[2025-06-30 18:34:39] -rw------- 1 boinc boinc      1032 Jun 30 18:33 memory_monitor_summary.json
[2025-06-30 18:34:39] -rw------- 1 boinc boinc    356393 Jun 30 18:33 log.45418292._000291.job.log.tgz.1
[2025-06-30 18:34:39] -rw------- 1 boinc boinc      7779 Jun 30 18:34 heartbeat.json
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc      8192 Jun 30 18:34 boinc_mmap_file
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc        27 Jun 30 18:34 wrapper_checkpoint.txt
[2025-06-30 18:34:39] -rw------- 1 boinc boinc       822 Jun 30 18:34 pilotlog.txt
[2025-06-30 18:34:39] -rw------- 1 boinc boinc        95 Jun 30 18:34 pilot_heartbeat.json
[2025-06-30 18:34:39] -rw------- 1 boinc boinc    360749 Jun 30 18:34 log.45418292._000291.job.log.1
[2025-06-30 18:34:39] -rw------- 1 boinc boinc       357 Jun 30 18:34 output.list
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc       620 Jun 30 18:34 runtime_log
[2025-06-30 18:34:39] -rw------- 1 boinc boinc    737280 Jun 30 18:34 result.tar.gz
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc      8729 Jun 30 18:34 runtime_log.err
[2025-06-30 18:34:39] -rw------- 1 boinc boinc       649 Jun 30 18:34 18uKDmvHbq7n9Rq4apOajLDm4fhM0noT9bVof3QYDmV0lKDmJlU1xm.diag
[2025-06-30 18:34:39] -rw-r--r-- 1 boinc boinc     21327 Jun 30 18:34 stderr.txt
[2025-06-30 18:34:39] HITS file was successfully produced:
[2025-06-30 18:34:39] -rw------- 1 boinc boinc 188806781 Jun 30 18:33 shared/HITS.pool.root.1
[2025-06-30 18:34:39]  *** Contents of shared directory: ***
[2025-06-30 18:34:39] total 434036
[2025-06-30 18:34:39] -rw-r--r-- 2 boinc boinc 254334209 Jun 30 17:36 ATLAS.root_0
[2025-06-30 18:34:39] -rw-r--r-- 2 boinc boinc     15095 Jun 30 17:36 start_atlas.sh
[2025-06-30 18:34:39] -rw-r--r-- 2 boinc boinc    542892 Jun 30 17:36 input.tar.gz
[2025-06-30 18:34:39] -rw------- 1 boinc boinc 188806781 Jun 30 18:33 HITS.pool.root.1
[2025-06-30 18:34:39] -rw------- 1 boinc boinc    737280 Jun 30 18:34 result.tar.gz
18:34:41 (2995223): run_atlas exited; CPU time 34397.074373
18:34:41 (2995223): called boinc_finish(0)

</stderr_txt>
]]>

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