Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-30 21:25:13 (41576): Detected: vboxwrapper 26206
2025-06-30 21:25:13 (41576): Detected: BOINC client v8.2.4
2025-06-30 21:25:14 (41576): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-30 21:25:14 (41576): Successfully copied 'init_data.xml' to the shared directory.
2025-06-30 21:25:15 (41576): Create VM. (boinc_044e9c6e346ed43e, slot#31)
2025-06-30 21:25:15 (41576): Setting Memory Size for VM. (4096MB)
2025-06-30 21:25:15 (41576): Setting CPU Count for VM. (1)
2025-06-30 21:25:16 (41576): Setting Chipset Options for VM.
2025-06-30 21:25:16 (41576): Setting Graphics Controller Options for VM.
2025-06-30 21:25:16 (41576): Setting Boot Options for VM.
2025-06-30 21:25:16 (41576): Setting Network Configuration for NAT.
2025-06-30 21:25:17 (41576): Enabling VM Network Access.
2025-06-30 21:25:17 (41576): Disabling USB Support for VM.
2025-06-30 21:25:17 (41576): Disabling COM Port Support for VM.
2025-06-30 21:25:17 (41576): Disabling LPT Port Support for VM.
2025-06-30 21:25:18 (41576): Disabling Audio Support for VM.
2025-06-30 21:25:18 (41576): Disabling Clipboard Support for VM.
2025-06-30 21:25:18 (41576): Disabling Drag and Drop Support for VM.
2025-06-30 21:25:19 (41576): Adding storage controller(s) to VM.
2025-06-30 21:25:19 (41576): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-30 21:25:19 (41576): Adding VirtualBox Guest Additions to VM.
2025-06-30 21:25:20 (41576): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-30 21:25:20 (41576): forwarding host port 53798 to guest port 80
2025-06-30 21:25:20 (41576): Enabling remote desktop for VM.
2025-06-30 21:25:20 (41576): Required extension pack not installed, remote desktop not enabled.
2025-06-30 21:25:20 (41576): Enabling shared directory for VM.
2025-06-30 21:25:21 (41576): Starting VM using VBoxManage interface. (boinc_044e9c6e346ed43e, slot#31)
2025-06-30 21:25:25 (41576): Successfully started VM. (PID = '39384')
2025-06-30 21:25:25 (41576): Reporting VM Process ID to BOINC.
2025-06-30 21:25:25 (41576): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-30 21:25:25 (41576): Guest Log: CPUID EDX: 0x178bfbff
2025-06-30 21:25:25 (41576): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-30 21:25:25 (41576): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-30 21:25:25 (41576): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-30 21:25:25 (41576): Detected: Web Application Enabled (http://localhost:53798)
2025-06-30 21:25:25 (41576): Preference change detected
2025-06-30 21:25:25 (41576): Setting CPU throttle for VM. (100%)
2025-06-30 21:25:26 (41576): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-30 21:25:27 (41576): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-30 21:25:27 (41576): Guest Log: BIOS: Booting from Hard Disk...
2025-06-30 21:25:29 (41576): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-30 21:25:29 (41576): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-30 21:25:29 (41576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-30 21:25:32 (41576): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-30 21:25:32 (41576): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-30 21:25:37 (41576): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-30 21:25:37 (41576): Guest Log: 00:00:00.000104 main     Log opened 2025-06-30T21:25:35.607964000Z
2025-06-30 21:25:37 (41576): Guest Log: 00:00:00.000183 main     OS Product: Linux
2025-06-30 21:25:37 (41576): Guest Log: 00:00:00.000200 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-30 21:25:37 (41576): Guest Log: 00:00:00.000213 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-30 21:25:37 (41576): Guest Log: 00:00:00.000227 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-30 21:25:37 (41576): Guest Log: 00:00:00.000227 main     Process ID: 1248
2025-06-30 21:25:37 (41576): Guest Log: 00:00:00.000227 main     Package type: LINUX_64BITS_GENERIC
2025-06-30 21:25:37 (41576): Guest Log: 00:00:00.000682 main     5.2.32 r132073 started. Verbose level = 0
2025-06-30 21:25:37 (41576): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-30 21:25:37 (41576): Guest Log: [INFO] Mounting shared directory
2025-06-30 21:25:37 (41576): Guest Log: [INFO] Checking for init_data.xml
2025-06-30 21:25:44 (41576): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-30 21:25:44 (41576): Guest Log: [INFO] Detected branch: prod
2025-06-30 21:25:44 (41576): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-30 21:25:44 (41576): Guest Log: Copying input files
2025-06-30 21:25:45 (41576): Guest Log: Copied input files into RunAtlas.
2025-06-30 21:25:45 (41576): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-06-30 21:25:47 (41576): Guest Log: 00:00:10.012316 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 187 043 000ns (GuestNow=1 751 311 547 432 545 000 ns GuestLast=1 751 318 735 619 588 000 ns fSetTimeLastLoop=true )
2025-06-30 21:25:53 (41576): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-30 21:25:53 (41576): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-30 21:25:53 (41576): Guest Log: 2.6.3.0 1522 0 29532 147773 4 1 3117618 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-06-30 21:25:53 (41576): Guest Log: copied the webapp to /var/www
2025-06-30 21:25:53 (41576): Guest Log: core_number=1
2025-06-30 21:25:53 (41576): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-30 21:25:54 (41576): Guest Log:  *** Starting ATLAS job. (PandaID=6714544989 taskID=45418909) ***
2025-06-30 23:05:28 (41576): Status Report: Elapsed Time: '6000.000000'
2025-06-30 23:05:28 (41576): Status Report: CPU Time: '5787.187500'
2025-07-01 00:45:31 (41576): Status Report: Elapsed Time: '12000.000000'
2025-07-01 00:45:31 (41576): Status Report: CPU Time: '11760.046875'
2025-07-01 02:25:33 (41576): Status Report: Elapsed Time: '18000.000000'
2025-07-01 02:25:33 (41576): Status Report: CPU Time: '17733.812500'
2025-07-01 04:05:36 (41576): Status Report: Elapsed Time: '24000.000000'
2025-07-01 04:05:36 (41576): Status Report: CPU Time: '23707.171875'
2025-07-01 05:45:38 (41576): Status Report: Elapsed Time: '30000.000000'
2025-07-01 05:45:38 (41576): Status Report: CPU Time: '29682.156250'
2025-07-01 07:17:41 (41576): Guest Log:  *** Job finished ***
2025-07-01 07:17:41 (41576): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:13,352 | INFO     | all workflow threads have been joined
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:13,352 | INFO     | end of generic workflow (traces error code: 0)
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:13,353 | INFO     | traces error code: 0
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:13,353 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:26,931 | INFO     | PID=5766 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:26,932 | INFO     | found 0 job(s) in 20 queues
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:26,932 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:26,932 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:26,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:26,932 | INFO     | [monitor] control thread has ended
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:27,006 [wrapper] ==== pilot stdout END ====
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:27,008 [wrapper] ==== wrapper stdout RESUME ====
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:27,010 [wrapper] pilotpid: 5766
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:27,012 [wrapper] Pilot exit status: 0
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:27,048 [wrapper] pandaids: 6714544989
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:27,061 [wrapper] cleanup supervisor_pilot 14285 5767
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:27,063 [wrapper] Test setup, not cleaning
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:27,065 [wrapper] apfmon messages muted
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:27,067 [wrapper] ==== wrapper stdout END ====
2025-07-01 07:17:41 (41576): Guest Log: 2025-07-01 05:17:27,069 [wrapper] ==== wrapper stderr END ====
2025-07-01 07:17:41 (41576): Guest Log:  *** Error codes and diagnostics ***
2025-07-01 07:17:41 (41576): Guest Log:     "exeErrorCode": 0,
2025-07-01 07:17:41 (41576): Guest Log:     "exeErrorDiag": "",
2025-07-01 07:17:41 (41576): Guest Log:     "pilotErrorCode": 0,
2025-07-01 07:17:41 (41576): Guest Log:     "pilotErrorDiag": "",
2025-07-01 07:17:41 (41576): Guest Log:  *** Listing of results directory ***
2025-07-01 07:17:41 (41576): Guest Log: total 192560
2025-07-01 07:17:41 (41576): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jun 30 19:14 pilot3.tar.gz
2025-07-01 07:17:41 (41576): Guest Log: -rwxr-xr-x. 1 atlas atlas      9354 Jun 30 19:25 init_data.xml
2025-07-01 07:17:41 (41576): Guest Log: -rwxr-xr-x. 1 atlas atlas    542885 Jun 30 19:25 input.tar.gz
2025-07-01 07:17:41 (41576): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jun 30 19:25 start_atlas.sh
2025-07-01 07:17:41 (41576): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 30 19:25 EVNT.45418906._000002.pool.root.1 -> /data/./ATLAS.root_0
2025-07-01 07:17:41 (41576): Guest Log: -rwx------. 1 atlas atlas     36292 Jun 30 19:25 runpilot2-wrapper.sh
2025-07-01 07:17:41 (41576): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jun 30 19:25 queuedata.json
2025-07-01 07:17:41 (41576): Guest Log: -rw-r--r--. 1 atlas atlas      2582 Jun 30 19:25 pandaJob.out
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas    970041 Jun 30 19:26 agis_schedconf.cvmfs.json
2025-07-01 07:17:41 (41576): Guest Log: drwx------. 4 atlas atlas      4096 Jun 30 19:26 pilot3
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas 186157560 Jul  1 05:16 HITS.45418909._000223.pool.root.1
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas      1022 Jul  1 05:16 memory_monitor_summary.json
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas   1574086 Jul  1 05:16 agis_ddmendpoints.agis.ALL.json
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas    491064 Jul  1 05:16 log.45418909._000223.job.log.tgz.1
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas      7763 Jul  1 05:16 heartbeat.json
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas        95 Jul  1 05:17 pilot_heartbeat.json
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas       744 Jul  1 05:17 pilotlog.txt
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas   3132234 Jul  1 05:17 log.45418909._000223.job.log.1
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas       357 Jul  1 05:17 output.list
2025-07-01 07:17:41 (41576): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul  1 05:17 runtime_log
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas   3645440 Jul  1 05:17 result.tar.gz
2025-07-01 07:17:41 (41576): Guest Log: -rw-r--r--. 1 atlas atlas      8466 Jul  1 05:17 runtime_log.err
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas       658 Jul  1 05:17 9KUNDmaJZq7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQd5KDmKwfnJm.diag
2025-07-01 07:17:41 (41576): Guest Log: Looking for outputfile HITS.45418909._000223.pool.root.1
2025-07-01 07:17:41 (41576): Guest Log: HITS file was successfully produced
2025-07-01 07:17:41 (41576): Guest Log: -rw-------. 1 atlas atlas 186157560 Jul  1 05:16 /home/atlas/RunAtlas/HITS.45418909._000223.pool.root.1
2025-07-01 07:17:41 (41576): Guest Log: Successfully finished the ATLAS job!
2025-07-01 07:17:41 (41576): Guest Log: Copying the results back to the shared directory!
2025-07-01 07:17:42 (41576): Guest Log:  *** Contents of shared directory: ***
2025-07-01 07:17:42 (41576): Guest Log: total 430572
2025-07-01 07:17:42 (41576): Guest Log: -rwxrwxrwx. 1 root root 250525615 Jun 30 19:25 ATLAS.root_0
2025-07-01 07:17:42 (41576): Guest Log: -rwxrwxrwx. 1 root root 186157560 Jul  1  2025 HITS.pool.root.1
2025-07-01 07:17:42 (41576): Guest Log: -rwxrwxrwx. 1 root root      9354 Jun 30 19:25 init_data.xml
2025-07-01 07:17:42 (41576): Guest Log: -rwxrwxrwx. 1 root root    542885 Jun 30 19:25 input.tar.gz
2025-07-01 07:17:42 (41576): Guest Log: -rwxrwxrwx. 1 root root   3645440 Jul  1  2025 result.tar.gz
2025-07-01 07:17:42 (41576): Guest Log: -rwxrwxrwx. 1 root root     15095 Jun 30 19:25 start_atlas.sh
2025-07-01 07:17:42 (41576): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-01 07:17:42 (41576): VM Completion File Detected.
2025-07-01 07:17:42 (41576): Powering off VM.
2025-07-01 07:17:42 (41576): Successfully stopped VM.
2025-07-01 07:17:42 (41576): Deregistering VM. (boinc_044e9c6e346ed43e, slot#31)
2025-07-01 07:17:42 (41576): Removing network bandwidth throttle group from VM.
2025-07-01 07:17:42 (41576): Removing VM from VirtualBox.
07:17:48 (41576): called boinc_finish(0)

</stderr_txt>
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