Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-30 08:34:29 (3204): Detected: vboxwrapper 26206
2025-06-30 08:34:29 (3204): Detected: BOINC client v8.2.4
2025-06-30 08:34:29 (3204): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-30 08:34:30 (3204): Successfully copied 'init_data.xml' to the shared directory.
2025-06-30 08:34:30 (3204): Create VM. (boinc_f3ce57642fa8e422, slot#23)
2025-06-30 08:34:31 (3204): Setting Memory Size for VM. (4096MB)
2025-06-30 08:34:31 (3204): Setting CPU Count for VM. (1)
2025-06-30 08:34:31 (3204): Setting Chipset Options for VM.
2025-06-30 08:34:32 (3204): Setting Graphics Controller Options for VM.
2025-06-30 08:34:32 (3204): Setting Boot Options for VM.
2025-06-30 08:34:32 (3204): Setting Network Configuration for NAT.
2025-06-30 08:34:33 (3204): Enabling VM Network Access.
2025-06-30 08:34:33 (3204): Disabling USB Support for VM.
2025-06-30 08:34:33 (3204): Disabling COM Port Support for VM.
2025-06-30 08:34:34 (3204): Disabling LPT Port Support for VM.
2025-06-30 08:34:35 (3204): Disabling Audio Support for VM.
2025-06-30 08:34:35 (3204): Disabling Clipboard Support for VM.
2025-06-30 08:34:36 (3204): Disabling Drag and Drop Support for VM.
2025-06-30 08:34:36 (3204): Adding storage controller(s) to VM.
2025-06-30 08:34:36 (3204): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-30 08:34:37 (3204): Adding VirtualBox Guest Additions to VM.
2025-06-30 08:34:37 (3204): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-30 08:34:38 (3204): forwarding host port 55072 to guest port 80
2025-06-30 08:34:38 (3204): Enabling remote desktop for VM.
2025-06-30 08:34:38 (3204): Required extension pack not installed, remote desktop not enabled.
2025-06-30 08:34:38 (3204): Enabling shared directory for VM.
2025-06-30 08:34:39 (3204): Starting VM using VBoxManage interface. (boinc_f3ce57642fa8e422, slot#23)
2025-06-30 08:34:48 (3204): Successfully started VM. (PID = '11868')
2025-06-30 08:34:48 (3204): Reporting VM Process ID to BOINC.
2025-06-30 08:34:48 (3204): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-30 08:34:48 (3204): Guest Log: CPUID EDX: 0x178bfbff
2025-06-30 08:34:48 (3204): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-30 08:34:48 (3204): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-30 08:34:48 (3204): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-30 08:34:48 (3204): Detected: Web Application Enabled (http://localhost:55072)
2025-06-30 08:34:48 (3204): Preference change detected
2025-06-30 08:34:48 (3204): Setting CPU throttle for VM. (100%)
2025-06-30 08:34:48 (3204): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-30 08:34:50 (3204): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-30 08:34:50 (3204): Guest Log: BIOS: Booting from Hard Disk...
2025-06-30 08:34:55 (3204): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-30 08:34:55 (3204): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-30 08:34:55 (3204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-30 08:35:05 (3204): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-30 08:35:05 (3204): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-30 08:35:28 (3204): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-30 08:35:28 (3204): Guest Log: 00:00:00.000503 main     Log opened 2025-06-30T08:35:26.003989000Z
2025-06-30 08:35:28 (3204): Guest Log: 00:00:00.000928 main     OS Product: Linux
2025-06-30 08:35:28 (3204): Guest Log: 00:00:00.001163 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-30 08:35:28 (3204): Guest Log: 00:00:00.001341 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-30 08:35:28 (3204): Guest Log: 00:00:00.001465 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-30 08:35:28 (3204): Guest Log: 00:00:00.001468 main     Process ID: 1256
2025-06-30 08:35:28 (3204): Guest Log: 00:00:00.001470 main     Package type: LINUX_64BITS_GENERIC
2025-06-30 08:35:28 (3204): Guest Log: 00:00:00.013302 main     5.2.32 r132073 started. Verbose level = 0
2025-06-30 08:35:28 (3204): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-30 08:35:28 (3204): Guest Log: [INFO] Mounting shared directory
2025-06-30 08:35:29 (3204): Guest Log: [INFO] Checking for init_data.xml
2025-06-30 08:35:32 (3204): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-30 08:35:32 (3204): Guest Log: [INFO] Detected branch: prod
2025-06-30 08:35:33 (3204): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-30 08:35:33 (3204): Guest Log: Copying input files
2025-06-30 08:35:38 (3204): Guest Log: 00:00:10.053301 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 198 910 000ns (GuestNow=1 751 265 337 857 400 000 ns GuestLast=1 751 272 526 056 310 000 ns fSetTimeLastLoop=true )
2025-06-30 08:35:38 (3204): Guest Log: Copied input files into RunAtlas.
2025-06-30 08:35:39 (3204): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-06-30 08:35:48 (3204): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-30 08:35:48 (3204): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-30 08:35:48 (3204): Guest Log: 2.6.3.0 1525 0 29708 147746 4 1 3120515 4096000 0 65024 0 0 n/a 1291 1045 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-06-30 08:35:49 (3204): Guest Log: copied the webapp to /var/www
2025-06-30 08:35:49 (3204): Guest Log: core_number=1
2025-06-30 08:35:49 (3204): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-30 08:35:50 (3204): Guest Log:  *** Starting ATLAS job. (PandaID=6707390344 taskID=45275559) ***
2025-06-30 10:15:17 (3204): Status Report: Elapsed Time: '6000.000000'
2025-06-30 10:15:17 (3204): Status Report: CPU Time: '5942.000000'
2025-06-30 11:55:34 (3204): Status Report: Elapsed Time: '12000.000000'
2025-06-30 11:55:34 (3204): Status Report: CPU Time: '11922.187500'
2025-06-30 13:36:47 (3204): Status Report: Elapsed Time: '18000.000000'
2025-06-30 13:36:47 (3204): Status Report: CPU Time: '17941.937500'
2025-06-30 15:17:59 (3204): Status Report: Elapsed Time: '24000.000000'
2025-06-30 15:17:59 (3204): Status Report: CPU Time: '23957.437500'
2025-06-30 16:59:26 (3204): Status Report: Elapsed Time: '30000.000000'
2025-06-30 16:59:26 (3204): Status Report: CPU Time: '29984.750000'
2025-06-30 18:41:27 (3204): Status Report: Elapsed Time: '36000.000000'
2025-06-30 18:41:27 (3204): Status Report: CPU Time: '36045.234375'
2025-06-30 20:21:39 (3204): Status Report: Elapsed Time: '42000.000000'
2025-06-30 20:21:39 (3204): Status Report: CPU Time: '42025.796875'
2025-06-30 22:02:48 (3204): Status Report: Elapsed Time: '48000.000000'
2025-06-30 22:02:48 (3204): Status Report: CPU Time: '48046.828125'
2025-06-30 23:43:21 (3204): Status Report: Elapsed Time: '54000.000000'
2025-06-30 23:43:21 (3204): Status Report: CPU Time: '54040.343750'
2025-07-01 01:24:35 (3204): Status Report: Elapsed Time: '60000.000000'
2025-07-01 01:24:35 (3204): Status Report: CPU Time: '60058.359375'
2025-07-01 03:05:22 (3204): Status Report: Elapsed Time: '66000.000000'
2025-07-01 03:05:22 (3204): Status Report: CPU Time: '66059.390625'
2025-07-01 04:29:42 (3204): Guest Log:  *** Job finished ***
2025-07-01 04:29:42 (3204): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:28,693 | INFO     | end of generic workflow (traces error code: 0)
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:28,694 | INFO     | traces error code: 0
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:28,694 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,609 | INFO     | PID=5790 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,610 | INFO     | found 0 job(s) in 20 queues
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,610 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,610 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,610 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,610 | CRITICAL | thread 'MainThread' is not alive
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,610 | INFO     | [monitor] control thread has ended
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,718 [wrapper] ==== pilot stdout END ====
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,723 [wrapper] ==== wrapper stdout RESUME ====
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,729 [wrapper] pilotpid: 5790
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,735 [wrapper] Pilot exit status: 0
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,800 [wrapper] pandaids: 6707390344
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,833 [wrapper] cleanup supervisor_pilot  7093 5791
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,838 [wrapper] Test setup, not cleaning
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,843 [wrapper] apfmon messages muted
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,850 [wrapper] ==== wrapper stdout END ====
2025-07-01 04:29:42 (3204): Guest Log: 2025-07-01 02:29:40,855 [wrapper] ==== wrapper stderr END ====
2025-07-01 04:29:42 (3204): Guest Log:  *** Error codes and diagnostics ***
2025-07-01 04:29:42 (3204): Guest Log:     "exeErrorCode": 0,
2025-07-01 04:29:42 (3204): Guest Log:     "exeErrorDiag": "",
2025-07-01 04:29:42 (3204): Guest Log:     "pilotErrorCode": 0,
2025-07-01 04:29:42 (3204): Guest Log:     "pilotErrorDiag": "",
2025-07-01 04:29:42 (3204): Guest Log:  *** Listing of results directory ***
2025-07-01 04:29:42 (3204): Guest Log: total 259708
2025-07-01 04:29:42 (3204): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jun 25 12:50 pilot3.tar.gz
2025-07-01 04:29:42 (3204): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jun 25 13:04 queuedata.json
2025-07-01 04:29:42 (3204): Guest Log: -rwx------. 1 atlas atlas     36245 Jun 25 13:05 runpilot2-wrapper.sh
2025-07-01 04:29:42 (3204): Guest Log: -rwxr-xr-x. 1 atlas atlas      9396 Jun 30 06:35 init_data.xml
2025-07-01 04:29:42 (3204): Guest Log: -rwxr-xr-x. 1 atlas atlas    542879 Jun 30 06:35 input.tar.gz
2025-07-01 04:29:42 (3204): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jun 30 06:35 start_atlas.sh
2025-07-01 04:29:42 (3204): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 30 06:35 EVNT.45275555._000226.pool.root.1 -> /data/./ATLAS.root_0
2025-07-01 04:29:42 (3204): Guest Log: -rw-r--r--. 1 atlas atlas      2498 Jun 30 06:35 pandaJob.out
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas    970665 Jun 30 06:36 agis_schedconf.cvmfs.json
2025-07-01 04:29:42 (3204): Guest Log: drwx------. 4 atlas atlas      4096 Jun 30 06:36 pilot3
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas 248324458 Jul  1 02:27 HITS.45275559._004667.pool.root.1
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas      1021 Jul  1 02:28 memory_monitor_summary.json
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas   1574086 Jul  1 02:28 agis_ddmendpoints.agis.ALL.json
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas    792252 Jul  1 02:28 log.45275559._004667.job.log.tgz.1
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas      7782 Jul  1 02:29 heartbeat.json
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas        95 Jul  1 02:29 pilot_heartbeat.json
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas       814 Jul  1 02:29 pilotlog.txt
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas   6124199 Jul  1 02:29 log.45275559._004667.job.log.1
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas       357 Jul  1 02:29 output.list
2025-07-01 04:29:42 (3204): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul  1 02:29 runtime_log
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas   6932480 Jul  1 02:29 result.tar.gz
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas       656 Jul  1 02:29 TPeMDm0zeo7n9Rq4apOajLDm4fhM0noT9bVof3QYDmU0iKDmWYgqXo.diag
2025-07-01 04:29:42 (3204): Guest Log: -rw-r--r--. 1 atlas atlas      8460 Jul  1 02:29 runtime_log.err
2025-07-01 04:29:42 (3204): Guest Log: Looking for outputfile HITS.45275559._004667.pool.root.1
2025-07-01 04:29:42 (3204): Guest Log: HITS file was successfully produced
2025-07-01 04:29:42 (3204): Guest Log: -rw-------. 1 atlas atlas 248324458 Jul  1 02:27 /home/atlas/RunAtlas/HITS.45275559._004667.pool.root.1
2025-07-01 04:29:46 (3204): Guest Log: Successfully finished the ATLAS job!
2025-07-01 04:29:46 (3204): Guest Log: Copying the results back to the shared directory!
2025-07-01 04:29:46 (3204): Guest Log:  *** Contents of shared directory: ***
2025-07-01 04:29:46 (3204): Guest Log: total 551480
2025-07-01 04:29:46 (3204): Guest Log: -rwxrwxrwx. 1 root root 308878098 Jun 30 06:34 ATLAS.root_0
2025-07-01 04:29:46 (3204): Guest Log: -rwxrwxrwx. 1 root root 248324458 Jul  1 02:29 HITS.pool.root.1
2025-07-01 04:29:46 (3204): Guest Log: -rwxrwxrwx. 1 root root      9396 Jun 30 06:34 init_data.xml
2025-07-01 04:29:46 (3204): Guest Log: -rwxrwxrwx. 1 root root    542879 Jun 30 06:34 input.tar.gz
2025-07-01 04:29:46 (3204): Guest Log: -rwxrwxrwx. 1 root root   6932480 Jul  1 02:29 result.tar.gz
2025-07-01 04:29:46 (3204): Guest Log: -rwxrwxrwx. 1 root root     15095 Jun 30 06:34 start_atlas.sh
2025-07-01 04:29:46 (3204): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-01 04:29:46 (3204): VM Completion File Detected.
2025-07-01 04:29:46 (3204): Powering off VM.
2025-07-01 04:29:46 (3204): Successfully stopped VM.
2025-07-01 04:29:46 (3204): Deregistering VM. (boinc_f3ce57642fa8e422, slot#23)
2025-07-01 04:29:46 (3204): Removing network bandwidth throttle group from VM.
2025-07-01 04:29:47 (3204): Removing VM from VirtualBox.
04:29:52 (3204): called boinc_finish(0)

</stderr_txt>
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