Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:28:21 (25881): wrapper (7.7.26015): starting
01:28:21 (25881): wrapper: running run_atlas (--nthreads 12)
[2025-06-30 01:28:21] Arguments: --nthreads 12
[2025-06-30 01:28:21] Threads: 12
[2025-06-30 01:28:21] Checking for CVMFS
[2025-06-30 01:28:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-30 01:28:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-30 01:28:21] Running cvmfs_config stat atlas.cern.ch
[2025-06-30 01:28:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-30 01:28:21] 2.11.2.0 2924 72655 96340 147744 1 1 13445329 20275200 1 130560 0 26560429 99.965 8968321 10191 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-30 01:28:21] CVMFS is ok
[2025-06-30 01:28:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-30 01:28:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-30 01:28:21] Further information can be found at the LHC@home message board.
[2025-06-30 01:28:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-30 01:28:21] Checking for apptainer binary...
[2025-06-30 01:28:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-30 01:28:21] Running /usr/bin/apptainer --version
[2025-06-30 01:28:22] apptainer version 1.3.2-1.el7
[2025-06-30 01:28:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-30 01:28:23] c-205-28.aglt2.org
[2025-06-30 01:28:23] apptainer works
[2025-06-30 01:28:23] Set ATHENA_PROC_NUMBER=12
[2025-06-30 01:28:23] Set ATHENA_CORE_NUMBER=12
[2025-06-30 01:28:23] Starting ATLAS job with PandaID=6713637843
[2025-06-30 01:28:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-30 03:09:37]  *** The last 200 lines of the pilot log: ***
[2025-06-30 03:09:37]  is_altstaged=None
[2025-06-30 03:09:37]  is_tar=False
[2025-06-30 03:09:37]  lfn=log.45400322._000032.job.log.tgz.1
[2025-06-30 03:09:37]  mtime=0
[2025-06-30 03:09:37]  protocol_id=None
[2025-06-30 03:09:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-30 03:09:37]  replicas=None
[2025-06-30 03:09:37]  scope=mc23_13p6TeV
[2025-06-30 03:09:37]  status=None
[2025-06-30 03:09:37]  status_code=0
[2025-06-30 03:09:37]  storage_token=
[2025-06-30 03:09:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6713637843/log.45400322._000032.job.log.tgz.1
[2025-06-30 03:09:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/a9/log.45400322._000032.job.log.tgz.1
[2025-06-30 03:09:37]  workdir=None
[2025-06-30 03:09:37] ]
[2025-06-30 03:09:37] 2025-06-30 07:09:00,926 | INFO     | transferring file log.45400322._000032.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6713637843/log.45400322._000032.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-30 03:09:37] 2025-06-30 07:09:00,927 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6713637843/log.45400322._000032.job.log.tgz.1 /tmp/boinchome/slots/0/log.45400322._000032.job
[2025-06-30 03:09:37] 2025-06-30 07:09:00,948 | INFO     | adding to output.list: log.45400322._000032.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/a9/log.45400322._000032.job.log.tg
[2025-06-30 03:09:37] 2025-06-30 07:09:00,949 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-30 03:09:37] 2025-06-30 07:09:00,949 | INFO     | summary of transferred files:
[2025-06-30 03:09:37] 2025-06-30 07:09:00,949 | INFO     |  -- lfn=log.45400322._000032.job.log.tgz.1, status_code=0, status=transferred
[2025-06-30 03:09:37] 2025-06-30 07:09:00,949 | INFO     | stage-out finished correctly
[2025-06-30 03:09:37] 2025-06-30 07:09:01,035 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-30 03:09:37] 2025-06-30 07:09:01,114 | INFO     | job 6713637843 has state=finished
[2025-06-30 03:09:37] 2025-06-30 07:09:01,114 | INFO     | preparing for final server update for job 6713637843 in state='finished'
[2025-06-30 03:09:37] 2025-06-30 07:09:01,115 | INFO     | this job has now completed (state=finished)
[2025-06-30 03:09:37] 2025-06-30 07:09:01,115 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-30 03:09:37] 2025-06-30 07:09:01,115 | INFO     | log transfer has been attempted: DONE
[2025-06-30 03:09:37] 2025-06-30 07:09:01,116 | INFO     | job 6713637843 has finished - writing final server update
[2025-06-30 03:09:37] 2025-06-30 07:09:01,116 | INFO     | total number of processed events: 400 (read)
[2025-06-30 03:09:37] 2025-06-30 07:09:01,117 | INFO     | executing command: lscpu
[2025-06-30 03:09:37] 2025-06-30 07:09:01,127 | INFO     | number of running child processes to parent process 3843: 1
[2025-06-30 03:09:37] 2025-06-30 07:09:01,127 | INFO     | maximum number of monitored processes: 6
[2025-06-30 03:09:37] 2025-06-30 07:09:01,145 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-30 03:09:37] 2025-06-30 07:09:03,630 | INFO     | monitor loop #447: job 0:6713637843 is in state 'finished'
[2025-06-30 03:09:37] 2025-06-30 07:09:03,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-30 03:09:37] 2025-06-30 07:09:05,756 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-30 03:09:37] 2025-06-30 07:09:05,760 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-06-30 03:09:37] 2025-06-30 07:09:05,763 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6713637843/memory_monitor_summary.json (trf name=prmon)
[2025-06-30 03:09:37] 2025-06-30 07:09:05,764 | INFO     | extracted standard info from prmon json
[2025-06-30 03:09:37] 2025-06-30 07:09:05,764 | INFO     | extracted standard memory fields from prmon json
[2025-06-30 03:09:37] 2025-06-30 07:09:05,764 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-30 03:09:37] 2025-06-30 07:09:05,764 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-30 03:09:37] 2025-06-30 07:09:05,765 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-30 03:09:37] 2025-06-30 07:09:05,767 | INFO     | fitting pss+swap vs Time
[2025-06-30 03:09:37] 2025-06-30 07:09:05,767 | INFO     | sum of square deviations: 241429643.0
[2025-06-30 03:09:37] 2025-06-30 07:09:05,768 | INFO     | sum of deviations: -12943389310.000002
[2025-06-30 03:09:37] 2025-06-30 07:09:05,768 | INFO     | mean x: 1751264428.5
[2025-06-30 03:09:37] 2025-06-30 07:09:05,768 | INFO     | mean y: 2914254.4782608696
[2025-06-30 03:09:37] 2025-06-30 07:09:05,768 | INFO     | -- intersect: 93890711134.62425
[2025-06-30 03:09:37] 2025-06-30 07:09:05,768 | INFO     | intersect: 93890711134.62425
[2025-06-30 03:09:37] 2025-06-30 07:09:05,768 | INFO     | chi2: 0.12827843797339414
[2025-06-30 03:09:37] 2025-06-30 07:09:05,769 | INFO     | -- intersect: 93890711134.62425
[2025-06-30 03:09:37] 2025-06-30 07:09:05,769 | INFO     | current memory leak: -53.61 B/s (using 92 data points, chi2=0.13)
[2025-06-30 03:09:37] 2025-06-30 07:09:05,769 | INFO     | could have reported an average CPU frequency of 2131 MHz (7 samples)
[2025-06-30 03:09:37] 2025-06-30 07:09:05,769 | INFO     | ..............................
[2025-06-30 03:09:37] 2025-06-30 07:09:05,769 | INFO     | . Timing measurements:
[2025-06-30 03:09:37] 2025-06-30 07:09:05,769 | INFO     | . get job = 0 s
[2025-06-30 03:09:37] 2025-06-30 07:09:05,770 | INFO     | . initial setup = 2 s
[2025-06-30 03:09:37] 2025-06-30 07:09:05,770 | INFO     | . payload setup = 9 s
[2025-06-30 03:09:37] 2025-06-30 07:09:05,770 | INFO     | . stage-in = 0 s
[2025-06-30 03:09:37] 2025-06-30 07:09:05,770 | INFO     | . payload execution = 5993 s
[2025-06-30 03:09:37] 2025-06-30 07:09:05,770 | INFO     | . stage-out = 0 s
[2025-06-30 03:09:37] 2025-06-30 07:09:05,770 | INFO     | . log creation = 0 s
[2025-06-30 03:09:37] 2025-06-30 07:09:05,770 | INFO     | ..............................
[2025-06-30 03:09:37] 2025-06-30 07:09:05,854 | INFO     | 
[2025-06-30 03:09:37] 2025-06-30 07:09:05,854 | INFO     | job summary report
[2025-06-30 03:09:37] 2025-06-30 07:09:05,854 | INFO     | --------------------------------------------------
[2025-06-30 03:09:37] 2025-06-30 07:09:05,854 | INFO     | PanDA job id: 6713637843
[2025-06-30 03:09:37] 2025-06-30 07:09:05,855 | INFO     | task id: 45400322
[2025-06-30 03:09:37] 2025-06-30 07:09:05,855 | INFO     | errors: (none)
[2025-06-30 03:09:37] 2025-06-30 07:09:05,855 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-30 03:09:37] 2025-06-30 07:09:05,855 | INFO     | pilot state: finished 
[2025-06-30 03:09:37] 2025-06-30 07:09:05,855 | INFO     | transexitcode: 0
[2025-06-30 03:09:37] 2025-06-30 07:09:05,855 | INFO     | exeerrorcode: 0
[2025-06-30 03:09:37] 2025-06-30 07:09:05,855 | INFO     | exeerrordiag: 
[2025-06-30 03:09:37] 2025-06-30 07:09:05,856 | INFO     | exitcode: 0
[2025-06-30 03:09:37] 2025-06-30 07:09:05,856 | INFO     | exitmsg: OK
[2025-06-30 03:09:37] 2025-06-30 07:09:05,856 | INFO     | cpuconsumptiontime: 66559 s
[2025-06-30 03:09:37] 2025-06-30 07:09:05,856 | INFO     | nevents: 400
[2025-06-30 03:09:37] 2025-06-30 07:09:05,856 | INFO     | neventsw: 0
[2025-06-30 03:09:37] 2025-06-30 07:09:05,856 | INFO     | pid: 3843
[2025-06-30 03:09:37] 2025-06-30 07:09:05,857 | INFO     | pgrp: 3843
[2025-06-30 03:09:37] 2025-06-30 07:09:05,857 | INFO     | corecount: 12
[2025-06-30 03:09:37] 2025-06-30 07:09:05,857 | INFO     | event service: False
[2025-06-30 03:09:37] 2025-06-30 07:09:05,857 | INFO     | sizes: {0: 2365829, 1: 2366685, 6: 2366947, 12: 2366975, 6006: 2393708, 6007: 2402890, 6012: 2403028}
[2025-06-30 03:09:37] 2025-06-30 07:09:05,857 | INFO     | --------------------------------------------------
[2025-06-30 03:09:37] 2025-06-30 07:09:05,857 | INFO     | 
[2025-06-30 03:09:37] 2025-06-30 07:09:05,857 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-30 03:09:37] 2025-06-30 07:09:05,883 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,883 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,884 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,884 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-30 03:09:37] 2025-06-30 07:09:05,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-30 03:09:37] 2025-06-30 07:09:05,886 | INFO     | job 6713637843 has completed (purged errors)
[2025-06-30 03:09:37] 2025-06-30 07:09:05,886 | INFO     | overall cleanup function is called
[2025-06-30 03:09:37] 2025-06-30 07:09:06,893 | INFO     | --- collectZombieJob: --- 10, [3843]
[2025-06-30 03:09:37] 2025-06-30 07:09:06,893 | INFO     | zombie collector waiting for pid 3843
[2025-06-30 03:09:37] 2025-06-30 07:09:06,893 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-30 03:09:37] 2025-06-30 07:09:06,893 | INFO     | collected zombie processes
[2025-06-30 03:09:37] 2025-06-30 07:09:06,894 | INFO     | will attempt to kill all subprocesses of pid=3843
[2025-06-30 03:09:37] 2025-06-30 07:09:06,989 | INFO     | process IDs to be killed: [3843] (in reverse order)
[2025-06-30 03:09:37] 2025-06-30 07:09:07,041 | WARNING  | found no corresponding commands to process id(s)
[2025-06-30 03:09:37] 2025-06-30 07:09:07,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-30 03:09:37] 2025-06-30 07:09:07,044 | INFO     | did not find any defunct processes belonging to 3843
[2025-06-30 03:09:37] 2025-06-30 07:09:07,046 | INFO     | did not find any defunct processes belonging to 3843
[2025-06-30 03:09:37] 2025-06-30 07:09:07,047 | INFO     | ready for new job
[2025-06-30 03:09:37] 2025-06-30 07:09:07,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-30 03:09:37] 2025-06-30 07:09:07,048 | INFO     | ***************************************
[2025-06-30 03:09:37] 2025-06-30 07:09:07,048 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-30 03:09:37] 2025-06-30 07:09:07,048 | INFO     | ***************************************
[2025-06-30 03:09:37] 2025-06-30 07:09:07,048 | INFO     | 
[2025-06-30 03:09:37] 2025-06-30 07:09:07,049 | INFO     | architecture information:
[2025-06-30 03:09:37] 2025-06-30 07:09:07,049 | INFO     | executing command: cat /etc/os-release
[2025-06-30 03:09:37] 2025-06-30 07:09:07,065 | INFO     | cat /etc/os-release:
[2025-06-30 03:09:37] NAME="CentOS Linux"
[2025-06-30 03:09:37] VERSION="7 (Core)"
[2025-06-30 03:09:37] ID="centos"
[2025-06-30 03:09:37] ID_LIKE="rhel fedora"
[2025-06-30 03:09:37] VERSION_ID="7"
[2025-06-30 03:09:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-30 03:09:37] ANSI_COLOR="0;31"
[2025-06-30 03:09:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-30 03:09:37] HOME_URL="https://www.centos.org/"
[2025-06-30 03:09:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-30 03:09:37] 
[2025-06-30 03:09:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-30 03:09:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-30 03:09:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-30 03:09:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-30 03:09:37] 
[2025-06-30 03:09:37] 2025-06-30 07:09:07,065 | INFO     | ***************************************
[2025-06-30 03:09:37] 2025-06-30 07:09:07,568 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-30 03:09:37] 2025-06-30 07:09:07,584 | INFO     | sufficient remaining disk space (29190258688 B)
[2025-06-30 03:09:37] 2025-06-30 07:09:07,585 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-30 03:09:37] 2025-06-30 07:09:07,585 | INFO     | current server update state: UPDATING_FINAL
[2025-06-30 03:09:37] 2025-06-30 07:09:07,585 | INFO     | update_server=False
[2025-06-30 03:09:37] 2025-06-30 07:09:07,585 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-30 03:09:37] 2025-06-30 07:09:07,586 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-30 03:09:37] 2025-06-30 07:09:07,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-30 03:09:37] 2025-06-30 07:09:07,586 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-30 03:09:37] 2025-06-30 07:09:07,586 | INFO     | aborting loop
[2025-06-30 03:09:37] 2025-06-30 07:09:07,730 | INFO     | all data control threads have been joined
[2025-06-30 03:09:37] 2025-06-30 07:09:07,815 | INFO     | all payload control threads have been joined
[2025-06-30 03:09:37] 2025-06-30 07:09:08,588 | INFO     | [job] queue monitor thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:08,591 | INFO     | [job] retrieve thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:08,592 | INFO     | [job] job monitor thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:08,729 | INFO     | all job control threads have been joined
[2025-06-30 03:09:37] 2025-06-30 07:09:08,737 | INFO     | [data] control thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:08,821 | INFO     | [payload] control thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:09,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-30 03:09:37] 2025-06-30 07:09:09,112 | INFO     | [payload] validate_post thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:09,227 | INFO     | [data] copytool_in thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:09,735 | INFO     | [job] control thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:09,737 | INFO     | [payload] execute_payloads thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:09,840 | INFO     | [job] create_data_payload thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:09,995 | INFO     | [payload] validate_pre thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:09,996 | INFO     | [job] validate thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:10,108 | INFO     | [payload] failed_post thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:11,049 | INFO     | [data] copytool_out thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:11,592 | INFO     | [data] queue_monitor thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:17,813 | INFO     | job.realtimelogging is not enabled
[2025-06-30 03:09:37] 2025-06-30 07:09:18,818 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-30 03:09:37] 2025-06-30 07:09:20,021 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140262928504640)>', '<ExcThread(monitor, started 140261795546880)>']
[2025-06-30 03:09:37] 2025-06-30 07:09:25,027 | INFO     | all workflow threads have been joined
[2025-06-30 03:09:37] 2025-06-30 07:09:25,027 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-30 03:09:37] 2025-06-30 07:09:25,027 | INFO     | traces error code: 0
[2025-06-30 03:09:37] 2025-06-30 07:09:25,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-30 03:09:37] 2025-06-30 07:09:37,411 | INFO     | PID=29557 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-30 03:09:37] 2025-06-30 07:09:37,411 | INFO     | found 0 job(s) in 20 queues
[2025-06-30 03:09:37] 2025-06-30 07:09:37,411 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-30 03:09:37] 2025-06-30 07:09:37,411 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-30 03:09:37] 2025-06-30 07:09:37,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-30 03:09:37] 2025-06-30 07:09:37,412 | CRITICAL | thread 'MainThread' is not alive
[2025-06-30 03:09:37] 2025-06-30 07:09:37,412 | INFO     | [monitor] control thread has ended
[2025-06-30 03:09:37] 2025-06-30 07:09:37,507 [wrapper] ==== pilot stdout END ====
[2025-06-30 03:09:37] 2025-06-30 07:09:37,511 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-30 03:09:37] 2025-06-30 07:09:37,514 [wrapper] pilotpid: 29557
[2025-06-30 03:09:37] 2025-06-30 07:09:37,518 [wrapper] Pilot exit status: 0
[2025-06-30 03:09:37] 2025-06-30 07:09:37,534 [wrapper] pandaids: 6713637843
[2025-06-30 03:09:37] 2025-06-30 07:09:37,575 [wrapper] cleanup supervisor_pilot 20474 29558
[2025-06-30 03:09:37] 2025-06-30 07:09:37,579 [wrapper] Test setup, not cleaning
[2025-06-30 03:09:37] 2025-06-30 07:09:37,583 [wrapper] apfmon messages muted
[2025-06-30 03:09:37] 2025-06-30 07:09:37,587 [wrapper] ==== wrapper stdout END ====
[2025-06-30 03:09:37] 2025-06-30 07:09:37,591 [wrapper] ==== wrapper stderr END ====
[2025-06-30 03:09:37]  *** Error codes and diagnostics ***
[2025-06-30 03:09:37]     "exeErrorCode": 0,
[2025-06-30 03:09:37]     "exeErrorDiag": "",
[2025-06-30 03:09:37]     "pilotErrorCode": 0,
[2025-06-30 03:09:37]     "pilotErrorDiag": "",
[2025-06-30 03:09:37]  *** Listing of results directory ***
[2025-06-30 03:09:37] total 530084
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas    530466 Jun 30 01:08 pilot3.tar.gz
[2025-06-30 03:09:37] -rwx------ 1 boincer umatlas     36245 Jun 30 01:27 runpilot2-wrapper.sh
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas      5112 Jun 30 01:27 queuedata.json
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas       100 Jun 30 01:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-30 03:09:37] -rwxr-xr-x 1 boincer umatlas      7986 Jun 30 01:28 run_atlas
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas       105 Jun 30 01:28 job.xml
[2025-06-30 03:09:37] -rw-r--r-- 2 boincer umatlas 294337973 Jun 30 01:28 EVNT.45400320._000002.pool.root.1
[2025-06-30 03:09:37] -rw-r--r-- 2 boincer umatlas     15095 Jun 30 01:28 start_atlas.sh
[2025-06-30 03:09:37] drwxrwx--x 2 boincer umatlas      4096 Jun 30 01:28 shared
[2025-06-30 03:09:37] -rw-r--r-- 2 boincer umatlas    542880 Jun 30 01:28 input.tar.gz
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas         0 Jun 30 01:28 boinc_lockfile
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas      2605 Jun 30 01:28 pandaJob.out
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas    970673 Jun 30 01:28 agis_schedconf.cvmfs.json
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas   1574086 Jun 30 01:28 agis_ddmendpoints.agis.ALL.json
[2025-06-30 03:09:37] drwx------ 4 boincer umatlas      4096 Jun 30 01:28 pilot3
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas      5867 Jun 30 03:01 init_data.xml
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas 242757885 Jun 30 03:08 HITS.45400322._000032.pool.root.1
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas       530 Jun 30 03:08 boinc_task_state.xml
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas      1047 Jun 30 03:08 memory_monitor_summary.json
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas        95 Jun 30 03:08 pilot_heartbeat.json
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas    369005 Jun 30 03:09 log.45400322._000032.job.log.tgz.1
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas      7840 Jun 30 03:09 heartbeat.json
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas        27 Jun 30 03:09 wrapper_checkpoint.txt
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas      8192 Jun 30 03:09 boinc_mmap_file
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas       815 Jun 30 03:09 pilotlog.txt
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas    560119 Jun 30 03:09 log.45400322._000032.job.log.1
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas       357 Jun 30 03:09 output.list
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas       620 Jun 30 03:09 runtime_log
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas    952320 Jun 30 03:09 result.tar.gz
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas      8662 Jun 30 03:09 runtime_log.err
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas       660 Jun 30 03:09 9yGLDm5DMq7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmir4KDmrDN9Mo.diag
[2025-06-30 03:09:37] -rw-r--r-- 1 boincer umatlas     21379 Jun 30 03:09 stderr.txt
[2025-06-30 03:09:37] HITS file was successfully produced:
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas 242757885 Jun 30 03:08 shared/HITS.pool.root.1
[2025-06-30 03:09:37]  *** Contents of shared directory: ***
[2025-06-30 03:09:37] total 525996
[2025-06-30 03:09:37] -rw-r--r-- 2 boincer umatlas 294337973 Jun 30 01:28 ATLAS.root_0
[2025-06-30 03:09:37] -rw-r--r-- 2 boincer umatlas     15095 Jun 30 01:28 start_atlas.sh
[2025-06-30 03:09:37] -rw-r--r-- 2 boincer umatlas    542880 Jun 30 01:28 input.tar.gz
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas 242757885 Jun 30 03:08 HITS.pool.root.1
[2025-06-30 03:09:37] -rw------- 1 boincer umatlas    952320 Jun 30 03:09 result.tar.gz
03:09:39 (25881): run_atlas exited; CPU time 66527.477015
03:09:39 (25881): called boinc_finish(0)

</stderr_txt>
]]>

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