Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:56:14 (173119): wrapper (7.7.26015): starting
13:56:14 (173119): wrapper: running run_atlas (--nthreads 8)
[2025-06-29 13:56:14] Arguments: --nthreads 8
[2025-06-29 13:56:14] Threads: 8
[2025-06-29 13:56:14] Checking for CVMFS
[2025-06-29 13:56:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-29 13:56:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-29 13:56:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-29 13:56:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-29 13:56:14] 2.11.2.0 7107 17543 205528 147725 1 17 12664860 18432000 917 130560 0 69729667 99.594 102904789 67628 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-29 13:56:14] CVMFS is ok
[2025-06-29 13:56:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-29 13:56:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-29 13:56:14] Further information can be found at the LHC@home message board.
[2025-06-29 13:56:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-29 13:56:14] Checking for apptainer binary...
[2025-06-29 13:56:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-29 13:56:14] Running /usr/bin/apptainer --version
[2025-06-29 13:56:14] apptainer version 1.3.2-1.el7
[2025-06-29 13:56:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-29 13:56:15] c-211-35-1.aglt2.org
[2025-06-29 13:56:15] apptainer works
[2025-06-29 13:56:15] Set ATHENA_PROC_NUMBER=8
[2025-06-29 13:56:15] Set ATHENA_CORE_NUMBER=8
[2025-06-29 13:56:15] Starting ATLAS job with PandaID=6713250388
[2025-06-29 13:56:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-29 14:56:44]  *** The last 200 lines of the pilot log: ***
[2025-06-29 14:56:44]  is_tar=False
[2025-06-29 14:56:44]  lfn=log.45400303._000034.job.log.tgz.1
[2025-06-29 14:56:44]  mtime=0
[2025-06-29 14:56:44]  protocol_id=None
[2025-06-29 14:56:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-29 14:56:44]  replicas=None
[2025-06-29 14:56:44]  scope=mc23_13p6TeV
[2025-06-29 14:56:44]  status=None
[2025-06-29 14:56:44]  status_code=0
[2025-06-29 14:56:44]  storage_token=
[2025-06-29 14:56:44]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6713250388/log.45400303._000034.job.log.tgz.1
[2025-06-29 14:56:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/fb/log.45400303._000034.job.log.tgz.1
[2025-06-29 14:56:44]  workdir=None
[2025-06-29 14:56:44] ]
[2025-06-29 14:56:44] 2025-06-29 18:56:04,108 | INFO     | transferring file log.45400303._000034.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6713250388/log.45400303._000034.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-29 14:56:44] 2025-06-29 18:56:04,108 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6713250388/log.45400303._000034.job.log.tgz.1 /tmp/boinchome/slots/1/log.45400303._000034.job
[2025-06-29 14:56:44] 2025-06-29 18:56:04,132 | INFO     | adding to output.list: log.45400303._000034.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/fb/log.45400303._000034.job.log.tg
[2025-06-29 14:56:44] 2025-06-29 18:56:04,132 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-29 14:56:44] 2025-06-29 18:56:04,133 | INFO     | summary of transferred files:
[2025-06-29 14:56:44] 2025-06-29 18:56:04,133 | INFO     |  -- lfn=log.45400303._000034.job.log.tgz.1, status_code=0, status=transferred
[2025-06-29 14:56:44] 2025-06-29 18:56:04,133 | INFO     | stage-out finished correctly
[2025-06-29 14:56:44] 2025-06-29 18:56:04,374 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-29 14:56:44] 2025-06-29 18:56:05,961 | INFO     | monitor loop #272: job 0:6713250388 is in state 'finished'
[2025-06-29 14:56:44] 2025-06-29 18:56:05,962 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-29 14:56:44] 2025-06-29 18:56:06,880 | INFO     | job 6713250388 has state=finished
[2025-06-29 14:56:44] 2025-06-29 18:56:06,880 | INFO     | preparing for final server update for job 6713250388 in state='finished'
[2025-06-29 14:56:44] 2025-06-29 18:56:06,881 | INFO     | this job has now completed (state=finished)
[2025-06-29 14:56:44] 2025-06-29 18:56:06,881 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-29 14:56:44] 2025-06-29 18:56:06,881 | INFO     | log transfer has been attempted: DONE
[2025-06-29 14:56:44] 2025-06-29 18:56:06,881 | INFO     | job 6713250388 has finished - writing final server update
[2025-06-29 14:56:44] 2025-06-29 18:56:06,882 | INFO     | total number of processed events: 400 (read)
[2025-06-29 14:56:44] 2025-06-29 18:56:06,882 | INFO     | executing command: lscpu
[2025-06-29 14:56:44] 2025-06-29 18:56:06,953 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-29 14:56:44] 2025-06-29 18:56:08,465 | INFO     | monitor loop #273: job 0:6713250388 is in state 'finished'
[2025-06-29 14:56:44] 2025-06-29 18:56:08,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-29 14:56:44] 2025-06-29 18:56:10,630 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-29 14:56:44] 2025-06-29 18:56:10,649 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 1170.1807395833337
[2025-06-29 14:56:44] 2025-06-29 18:56:10,666 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6713250388/memory_monitor_summary.json (trf name=prmon)
[2025-06-29 14:56:44] 2025-06-29 18:56:10,667 | INFO     | extracted standard info from prmon json
[2025-06-29 14:56:44] 2025-06-29 18:56:10,667 | INFO     | extracted standard memory fields from prmon json
[2025-06-29 14:56:44] 2025-06-29 18:56:10,667 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-29 14:56:44] 2025-06-29 18:56:10,668 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-29 14:56:44] 2025-06-29 18:56:10,668 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-29 14:56:44] 2025-06-29 18:56:10,669 | INFO     | fitting pss+swap vs Time
[2025-06-29 14:56:44] 2025-06-29 18:56:10,670 | INFO     | sum of square deviations: 43584073.0
[2025-06-29 14:56:44] 2025-06-29 18:56:10,670 | INFO     | sum of deviations: -249364645.0000001
[2025-06-29 14:56:44] 2025-06-29 18:56:10,670 | INFO     | mean x: 1751221669.5
[2025-06-29 14:56:44] 2025-06-29 18:56:10,670 | INFO     | mean y: 2540376.846153846
[2025-06-29 14:56:44] 2025-06-29 18:56:10,670 | INFO     | -- intersect: 10022089718.441074
[2025-06-29 14:56:44] 2025-06-29 18:56:10,670 | INFO     | intersect: 10022089718.441074
[2025-06-29 14:56:44] 2025-06-29 18:56:10,670 | INFO     | chi2: 0.008485706759581147
[2025-06-29 14:56:44] 2025-06-29 18:56:10,671 | INFO     | -- intersect: 10022089718.441074
[2025-06-29 14:56:44] 2025-06-29 18:56:10,671 | INFO     | current memory leak: -5.72 B/s (using 52 data points, chi2=0.01)
[2025-06-29 14:56:44] 2025-06-29 18:56:10,671 | INFO     | could have reported an average CPU frequency of 1919 MHz (5 samples)
[2025-06-29 14:56:44] 2025-06-29 18:56:10,671 | INFO     | ..............................
[2025-06-29 14:56:44] 2025-06-29 18:56:10,671 | INFO     | . Timing measurements:
[2025-06-29 14:56:44] 2025-06-29 18:56:10,671 | INFO     | . get job = 0 s
[2025-06-29 14:56:44] 2025-06-29 18:56:10,671 | INFO     | . initial setup = 2 s
[2025-06-29 14:56:44] 2025-06-29 18:56:10,671 | INFO     | . payload setup = 6 s
[2025-06-29 14:56:44] 2025-06-29 18:56:10,672 | INFO     | . stage-in = 0 s
[2025-06-29 14:56:44] 2025-06-29 18:56:10,672 | INFO     | . payload execution = 3553 s
[2025-06-29 14:56:44] 2025-06-29 18:56:10,672 | INFO     | . stage-out = 0 s
[2025-06-29 14:56:44] 2025-06-29 18:56:10,672 | INFO     | . log creation = 0 s
[2025-06-29 14:56:44] 2025-06-29 18:56:10,672 | INFO     | ..............................
[2025-06-29 14:56:44] 2025-06-29 18:56:11,229 | INFO     | 
[2025-06-29 14:56:44] 2025-06-29 18:56:11,229 | INFO     | job summary report
[2025-06-29 14:56:44] 2025-06-29 18:56:11,230 | INFO     | --------------------------------------------------
[2025-06-29 14:56:44] 2025-06-29 18:56:11,230 | INFO     | PanDA job id: 6713250388
[2025-06-29 14:56:44] 2025-06-29 18:56:11,230 | INFO     | task id: 45400303
[2025-06-29 14:56:44] 2025-06-29 18:56:11,230 | INFO     | errors: (none)
[2025-06-29 14:56:44] 2025-06-29 18:56:11,230 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-29 14:56:44] 2025-06-29 18:56:11,230 | INFO     | pilot state: finished 
[2025-06-29 14:56:44] 2025-06-29 18:56:11,230 | INFO     | transexitcode: 0
[2025-06-29 14:56:44] 2025-06-29 18:56:11,230 | INFO     | exeerrorcode: 0
[2025-06-29 14:56:44] 2025-06-29 18:56:11,230 | INFO     | exeerrordiag: 
[2025-06-29 14:56:44] 2025-06-29 18:56:11,231 | INFO     | exitcode: 0
[2025-06-29 14:56:44] 2025-06-29 18:56:11,231 | INFO     | exitmsg: OK
[2025-06-29 14:56:44] 2025-06-29 18:56:11,231 | INFO     | cpuconsumptiontime: 26707 s
[2025-06-29 14:56:44] 2025-06-29 18:56:11,231 | INFO     | nevents: 400
[2025-06-29 14:56:44] 2025-06-29 18:56:11,231 | INFO     | neventsw: 0
[2025-06-29 14:56:44] 2025-06-29 18:56:11,231 | INFO     | pid: 189156
[2025-06-29 14:56:44] 2025-06-29 18:56:11,231 | INFO     | pgrp: 189156
[2025-06-29 14:56:44] 2025-06-29 18:56:11,231 | INFO     | corecount: 8
[2025-06-29 14:56:44] 2025-06-29 18:56:11,231 | INFO     | event service: False
[2025-06-29 14:56:44] 2025-06-29 18:56:11,232 | INFO     | sizes: {0: 2366666, 3: 2366928, 11: 2366956, 3564: 2401711, 3565: 2401711, 3571: 2401937}
[2025-06-29 14:56:44] 2025-06-29 18:56:11,232 | INFO     | --------------------------------------------------
[2025-06-29 14:56:44] 2025-06-29 18:56:11,232 | INFO     | 
[2025-06-29 14:56:44] 2025-06-29 18:56:11,232 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-29 14:56:44] 2025-06-29 18:56:11,260 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,260 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,260 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,260 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,261 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,261 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,261 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,261 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,261 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,261 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,261 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,261 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,262 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,262 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,262 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,262 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,262 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,262 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-29 14:56:44] 2025-06-29 18:56:11,262 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,262 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-29 14:56:44] 2025-06-29 18:56:11,263 | INFO     | job 6713250388 has completed (purged errors)
[2025-06-29 14:56:44] 2025-06-29 18:56:11,263 | INFO     | overall cleanup function is called
[2025-06-29 14:56:44] 2025-06-29 18:56:12,273 | INFO     | --- collectZombieJob: --- 10, [189156]
[2025-06-29 14:56:44] 2025-06-29 18:56:12,273 | INFO     | zombie collector waiting for pid 189156
[2025-06-29 14:56:44] 2025-06-29 18:56:12,273 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-29 14:56:44] 2025-06-29 18:56:12,274 | INFO     | collected zombie processes
[2025-06-29 14:56:44] 2025-06-29 18:56:12,274 | INFO     | will attempt to kill all subprocesses of pid=189156
[2025-06-29 14:56:44] 2025-06-29 18:56:12,450 | INFO     | process IDs to be killed: [189156] (in reverse order)
[2025-06-29 14:56:44] 2025-06-29 18:56:12,533 | WARNING  | found no corresponding commands to process id(s)
[2025-06-29 14:56:44] 2025-06-29 18:56:12,533 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-29 14:56:44] 2025-06-29 18:56:12,541 | INFO     | did not find any defunct processes belonging to 189156
[2025-06-29 14:56:44] 2025-06-29 18:56:12,548 | INFO     | did not find any defunct processes belonging to 189156
[2025-06-29 14:56:44] 2025-06-29 18:56:12,549 | INFO     | ready for new job
[2025-06-29 14:56:44] 2025-06-29 18:56:12,549 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-29 14:56:44] 2025-06-29 18:56:12,550 | INFO     | ***************************************
[2025-06-29 14:56:44] 2025-06-29 18:56:12,550 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-29 14:56:44] 2025-06-29 18:56:12,550 | INFO     | ***************************************
[2025-06-29 14:56:44] 2025-06-29 18:56:12,551 | INFO     | 
[2025-06-29 14:56:44] 2025-06-29 18:56:12,557 | INFO     | architecture information:
[2025-06-29 14:56:44] 2025-06-29 18:56:12,557 | INFO     | executing command: cat /etc/os-release
[2025-06-29 14:56:44] 2025-06-29 18:56:12,577 | INFO     | cat /etc/os-release:
[2025-06-29 14:56:44] NAME="CentOS Linux"
[2025-06-29 14:56:44] VERSION="7 (Core)"
[2025-06-29 14:56:44] ID="centos"
[2025-06-29 14:56:44] ID_LIKE="rhel fedora"
[2025-06-29 14:56:44] VERSION_ID="7"
[2025-06-29 14:56:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-29 14:56:44] ANSI_COLOR="0;31"
[2025-06-29 14:56:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-29 14:56:44] HOME_URL="https://www.centos.org/"
[2025-06-29 14:56:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-29 14:56:44] 
[2025-06-29 14:56:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-29 14:56:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-29 14:56:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-29 14:56:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-29 14:56:44] 
[2025-06-29 14:56:44] 2025-06-29 18:56:12,577 | INFO     | ***************************************
[2025-06-29 14:56:44] 2025-06-29 18:56:13,082 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-29 14:56:44] 2025-06-29 18:56:13,105 | INFO     | sufficient remaining disk space (105865281536 B)
[2025-06-29 14:56:44] 2025-06-29 18:56:13,105 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-29 14:56:44] 2025-06-29 18:56:13,106 | INFO     | current server update state: UPDATING_FINAL
[2025-06-29 14:56:44] 2025-06-29 18:56:13,106 | INFO     | update_server=False
[2025-06-29 14:56:44] 2025-06-29 18:56:13,106 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-29 14:56:44] 2025-06-29 18:56:13,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-29 14:56:44] 2025-06-29 18:56:13,158 | INFO     | all payload control threads have been joined
[2025-06-29 14:56:44] 2025-06-29 18:56:13,264 | INFO     | all data control threads have been joined
[2025-06-29 14:56:44] 2025-06-29 18:56:13,475 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-29 14:56:44] 2025-06-29 18:56:13,475 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-29 14:56:44] 2025-06-29 18:56:13,475 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-29 14:56:44] 2025-06-29 18:56:13,475 | INFO     | will abort loop
[2025-06-29 14:56:44] 2025-06-29 18:56:13,476 | INFO     | all job control threads have been joined
[2025-06-29 14:56:44] 2025-06-29 18:56:14,114 | INFO     | [job] retrieve thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:14,145 | INFO     | [data] copytool_in thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:14,163 | INFO     | [payload] control thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:14,270 | INFO     | [data] control thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:14,390 | INFO     | [payload] failed_post thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:14,481 | INFO     | [job] job monitor thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:14,482 | INFO     | [job] control thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:14,789 | INFO     | [payload] execute_payloads thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:14,810 | INFO     | [job] validate thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:14,977 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-29 14:56:44] 2025-06-29 18:56:15,115 | INFO     | [data] copytool_out thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:15,387 | INFO     | [job] create_data_payload thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:15,487 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:15,560 | INFO     | [payload] validate_post thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:15,563 | INFO     | [payload] validate_pre thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:15,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-29 14:56:44] 2025-06-29 18:56:16,773 | INFO     | [job] queue monitor thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:18,987 | INFO     | [data] queue_monitor thread has finished
[2025-06-29 14:56:44] 2025-06-29 18:56:20,150 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140349771405120)>', '<ExcThread(monitor, started 140349552695040)>']
[2025-06-29 14:56:44] 2025-06-29 18:56:22,832 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-06-29 14:56:44] 2025-06-29 18:56:25,181 | INFO     | all workflow threads have been joined
[2025-06-29 14:56:44] 2025-06-29 18:56:25,181 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-29 14:56:44] 2025-06-29 18:56:25,181 | INFO     | traces error code: 0
[2025-06-29 14:56:44] 2025-06-29 18:56:25,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-29 14:56:44] 2025-06-29 18:56:43,903 | INFO     | PID=177000 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-29 14:56:44] 2025-06-29 18:56:43,904 | INFO     | found 0 job(s) in 20 queues
[2025-06-29 14:56:44] 2025-06-29 18:56:43,904 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-29 14:56:44] 2025-06-29 18:56:43,904 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-29 14:56:44] 2025-06-29 18:56:43,904 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-29 14:56:44] 2025-06-29 18:56:43,904 | INFO     | [monitor] control thread has ended
[2025-06-29 14:56:44] 2025-06-29 18:56:44,007 [wrapper] ==== pilot stdout END ====
[2025-06-29 14:56:44] 2025-06-29 18:56:44,011 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-29 14:56:44] 2025-06-29 18:56:44,015 [wrapper] pilotpid: 177000
[2025-06-29 14:56:44] 2025-06-29 18:56:44,018 [wrapper] Pilot exit status: 0
[2025-06-29 14:56:44] 2025-06-29 18:56:44,030 [wrapper] pandaids: 6713250388
[2025-06-29 14:56:44] 2025-06-29 18:56:44,086 [wrapper] cleanup supervisor_pilot 239276 177001
[2025-06-29 14:56:44] 2025-06-29 18:56:44,090 [wrapper] Test setup, not cleaning
[2025-06-29 14:56:44] 2025-06-29 18:56:44,093 [wrapper] apfmon messages muted
[2025-06-29 14:56:44] 2025-06-29 18:56:44,097 [wrapper] ==== wrapper stdout END ====
[2025-06-29 14:56:44] 2025-06-29 18:56:44,100 [wrapper] ==== wrapper stderr END ====
[2025-06-29 14:56:44]  *** Error codes and diagnostics ***
[2025-06-29 14:56:44]     "exeErrorCode": 0,
[2025-06-29 14:56:44]     "exeErrorDiag": "",
[2025-06-29 14:56:44]     "pilotErrorCode": 0,
[2025-06-29 14:56:44]     "pilotErrorDiag": "",
[2025-06-29 14:56:44]  *** Listing of results directory ***
[2025-06-29 14:56:44] total 515780
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas    530466 Jun 29 13:39 pilot3.tar.gz
[2025-06-29 14:56:44] -rwx------ 1 boincer umatlas     36245 Jun 29 13:55 runpilot2-wrapper.sh
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas      5112 Jun 29 13:55 queuedata.json
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas       100 Jun 29 13:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-29 14:56:44] -rwxr-xr-x 1 boincer umatlas      7986 Jun 29 13:56 run_atlas
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas       105 Jun 29 13:56 job.xml
[2025-06-29 14:56:44] -rw-r--r-- 2 boincer umatlas 290688403 Jun 29 13:56 EVNT.45400300._000002.pool.root.1
[2025-06-29 14:56:44] -rw-r--r-- 2 boincer umatlas     15095 Jun 29 13:56 start_atlas.sh
[2025-06-29 14:56:44] drwxrwx--x 2 boincer umatlas      4096 Jun 29 13:56 shared
[2025-06-29 14:56:44] -rw-r--r-- 2 boincer umatlas    542879 Jun 29 13:56 input.tar.gz
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas         0 Jun 29 13:56 boinc_lockfile
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas      2616 Jun 29 13:56 pandaJob.out
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas    970673 Jun 29 13:56 agis_schedconf.cvmfs.json
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas   1574086 Jun 29 13:56 agis_ddmendpoints.agis.ALL.json
[2025-06-29 14:56:44] drwx------ 4 boincer umatlas      4096 Jun 29 13:56 pilot3
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas      6383 Jun 29 14:54 init_data.xml
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas 232311006 Jun 29 14:55 HITS.45400303._000034.pool.root.1
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas      1046 Jun 29 14:56 memory_monitor_summary.json
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas       529 Jun 29 14:56 boinc_task_state.xml
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas    290389 Jun 29 14:56 log.45400303._000034.job.log.tgz.1
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas      7830 Jun 29 14:56 heartbeat.json
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas        27 Jun 29 14:56 wrapper_checkpoint.txt
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas      8192 Jun 29 14:56 boinc_mmap_file
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas       746 Jun 29 14:56 pilotlog.txt
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas        95 Jun 29 14:56 pilot_heartbeat.json
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas    366883 Jun 29 14:56 log.45400303._000034.job.log.1
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas       357 Jun 29 14:56 output.list
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas       620 Jun 29 14:56 runtime_log
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas    675840 Jun 29 14:56 result.tar.gz
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas      8670 Jun 29 14:56 runtime_log.err
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas       659 Jun 29 14:56 GJXLDmmQBq7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXb4KDmmYE0Ao.diag
[2025-06-29 14:56:44] -rw-r--r-- 1 boincer umatlas     21546 Jun 29 14:56 stderr.txt
[2025-06-29 14:56:44] HITS file was successfully produced:
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas 232311006 Jun 29 14:55 shared/HITS.pool.root.1
[2025-06-29 14:56:44]  *** Contents of shared directory: ***
[2025-06-29 14:56:44] total 511960
[2025-06-29 14:56:44] -rw-r--r-- 2 boincer umatlas 290688403 Jun 29 13:56 ATLAS.root_0
[2025-06-29 14:56:44] -rw-r--r-- 2 boincer umatlas     15095 Jun 29 13:56 start_atlas.sh
[2025-06-29 14:56:44] -rw-r--r-- 2 boincer umatlas    542879 Jun 29 13:56 input.tar.gz
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas 232311006 Jun 29 14:55 HITS.pool.root.1
[2025-06-29 14:56:44] -rw------- 1 boincer umatlas    675840 Jun 29 14:56 result.tar.gz
14:56:45 (173119): run_atlas exited; CPU time 26612.300769
14:56:45 (173119): called boinc_finish(0)

</stderr_txt>
]]>

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