Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:39:21 (15758): wrapper (7.7.26015): starting
06:39:21 (15758): wrapper: running run_atlas (--nthreads 12)
[2025-06-29 06:39:21] Arguments: --nthreads 12
[2025-06-29 06:39:21] Threads: 12
[2025-06-29 06:39:21] Checking for CVMFS
[2025-06-29 06:39:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-29 06:39:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-29 06:39:21] Running cvmfs_config stat atlas.cern.ch
[2025-06-29 06:39:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-29 06:39:21] 2.11.2.0 2924 71526 92960 147715 2 58 13305153 20275201 1 130560 0 25658804 99.964 8931171 10158 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-29 06:39:21] CVMFS is ok
[2025-06-29 06:39:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-29 06:39:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-29 06:39:21] Further information can be found at the LHC@home message board.
[2025-06-29 06:39:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-29 06:39:21] Checking for apptainer binary...
[2025-06-29 06:39:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-29 06:39:21] Running /usr/bin/apptainer --version
[2025-06-29 06:39:21] apptainer version 1.3.2-1.el7
[2025-06-29 06:39:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-29 06:39:23] c-205-28.aglt2.org
[2025-06-29 06:39:23] apptainer works
[2025-06-29 06:39:23] Set ATHENA_PROC_NUMBER=12
[2025-06-29 06:39:23] Set ATHENA_CORE_NUMBER=12
[2025-06-29 06:39:23] Starting ATLAS job with PandaID=6712975220
[2025-06-29 06:39:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-29 08:14:55]  *** The last 200 lines of the pilot log: ***
[2025-06-29 08:14:55]  protocol_id=None
[2025-06-29 08:14:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-29 08:14:55]  replicas=None
[2025-06-29 08:14:55]  scope=mc23_13p6TeV
[2025-06-29 08:14:55]  status=None
[2025-06-29 08:14:55]  status_code=0
[2025-06-29 08:14:55]  storage_token=
[2025-06-29 08:14:55]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6712975220/log.45400284._000076.job.log.tgz.1
[2025-06-29 08:14:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/34/5b/log.45400284._000076.job.log.tgz.1
[2025-06-29 08:14:55]  workdir=None
[2025-06-29 08:14:55] ]
[2025-06-29 08:14:55] 2025-06-29 12:14:16,199 | INFO     | transferring file log.45400284._000076.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6712975220/log.45400284._000076.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-29 08:14:55] 2025-06-29 12:14:16,199 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6712975220/log.45400284._000076.job.log.tgz.1 /tmp/boinchome/slots/0/log.45400284._000076.job
[2025-06-29 08:14:55] 2025-06-29 12:14:16,222 | INFO     | adding to output.list: log.45400284._000076.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/34/5b/log.45400284._000076.job.log.tg
[2025-06-29 08:14:55] 2025-06-29 12:14:16,223 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-29 08:14:55] 2025-06-29 12:14:16,223 | INFO     | summary of transferred files:
[2025-06-29 08:14:55] 2025-06-29 12:14:16,223 | INFO     |  -- lfn=log.45400284._000076.job.log.tgz.1, status_code=0, status=transferred
[2025-06-29 08:14:55] 2025-06-29 12:14:16,224 | INFO     | stage-out finished correctly
[2025-06-29 08:14:55] 2025-06-29 12:14:17,130 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-29 08:14:55] 2025-06-29 12:14:18,213 | INFO     | monitor loop #424: job 0:6712975220 is in state 'finished'
[2025-06-29 08:14:55] 2025-06-29 12:14:18,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-29 08:14:55] 2025-06-29 12:14:18,579 | INFO     | job 6712975220 has state=finished
[2025-06-29 08:14:55] 2025-06-29 12:14:18,579 | INFO     | preparing for final server update for job 6712975220 in state='finished'
[2025-06-29 08:14:55] 2025-06-29 12:14:18,580 | INFO     | this job has now completed (state=finished)
[2025-06-29 08:14:55] 2025-06-29 12:14:18,580 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-29 08:14:55] 2025-06-29 12:14:18,580 | INFO     | log transfer has been attempted: DONE
[2025-06-29 08:14:55] 2025-06-29 12:14:18,581 | INFO     | job 6712975220 has finished - writing final server update
[2025-06-29 08:14:55] 2025-06-29 12:14:18,581 | INFO     | total number of processed events: 400 (read)
[2025-06-29 08:14:55] 2025-06-29 12:14:18,582 | INFO     | executing command: lscpu
[2025-06-29 08:14:55] 2025-06-29 12:14:18,608 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-29 08:14:55] 2025-06-29 12:14:20,717 | INFO     | monitor loop #425: job 0:6712975220 is in state 'finished'
[2025-06-29 08:14:55] 2025-06-29 12:14:20,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-29 08:14:55] 2025-06-29 12:14:21,386 | INFO     | PID=19363 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-29 08:14:55] 2025-06-29 12:14:23,220 | INFO     | monitor loop #426: job 0:6712975220 is in state 'finished'
[2025-06-29 08:14:55] 2025-06-29 12:14:23,220 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-29 08:14:55] 2025-06-29 12:14:23,338 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-29 08:14:55] 2025-06-29 12:14:23,342 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2025-06-29 08:14:55] 2025-06-29 12:14:23,344 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6712975220/memory_monitor_summary.json (trf name=prmon)
[2025-06-29 08:14:55] 2025-06-29 12:14:23,345 | INFO     | extracted standard info from prmon json
[2025-06-29 08:14:55] 2025-06-29 12:14:23,345 | INFO     | extracted standard memory fields from prmon json
[2025-06-29 08:14:55] 2025-06-29 12:14:23,345 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-29 08:14:55] 2025-06-29 12:14:23,346 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-29 08:14:55] 2025-06-29 12:14:23,346 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-29 08:14:55] 2025-06-29 12:14:23,347 | INFO     | fitting pss+swap vs Time
[2025-06-29 08:14:55] 2025-06-29 12:14:23,348 | INFO     | sum of square deviations: 197203697.5
[2025-06-29 08:14:55] 2025-06-29 12:14:23,348 | INFO     | sum of deviations: -7633446120.999999
[2025-06-29 08:14:55] 2025-06-29 12:14:23,348 | INFO     | mean x: 1751196505.5
[2025-06-29 08:14:55] 2025-06-29 12:14:23,348 | INFO     | mean y: 2781214.8372093025
[2025-06-29 08:14:55] 2025-06-29 12:14:23,348 | INFO     | -- intersect: 67788853897.463905
[2025-06-29 08:14:55] 2025-06-29 12:14:23,349 | INFO     | intersect: 67788853897.463905
[2025-06-29 08:14:55] 2025-06-29 12:14:23,349 | INFO     | chi2: 0.10030438686111408
[2025-06-29 08:14:55] 2025-06-29 12:14:23,349 | INFO     | -- intersect: 67788853897.463905
[2025-06-29 08:14:55] 2025-06-29 12:14:23,349 | INFO     | current memory leak: -38.71 B/s (using 86 data points, chi2=0.10)
[2025-06-29 08:14:55] 2025-06-29 12:14:23,349 | INFO     | could have reported an average CPU frequency of 2069 MHz (7 samples)
[2025-06-29 08:14:55] 2025-06-29 12:14:23,350 | INFO     | ..............................
[2025-06-29 08:14:55] 2025-06-29 12:14:23,350 | INFO     | . Timing measurements:
[2025-06-29 08:14:55] 2025-06-29 12:14:23,350 | INFO     | . get job = 0 s
[2025-06-29 08:14:55] 2025-06-29 12:14:23,350 | INFO     | . initial setup = 2 s
[2025-06-29 08:14:55] 2025-06-29 12:14:23,350 | INFO     | . payload setup = 9 s
[2025-06-29 08:14:55] 2025-06-29 12:14:23,350 | INFO     | . stage-in = 0 s
[2025-06-29 08:14:55] 2025-06-29 12:14:23,350 | INFO     | . payload execution = 5648 s
[2025-06-29 08:14:55] 2025-06-29 12:14:23,350 | INFO     | . stage-out = 0 s
[2025-06-29 08:14:55] 2025-06-29 12:14:23,350 | INFO     | . log creation = 0 s
[2025-06-29 08:14:55] 2025-06-29 12:14:23,350 | INFO     | ..............................
[2025-06-29 08:14:55] 2025-06-29 12:14:23,596 | INFO     | 
[2025-06-29 08:14:55] 2025-06-29 12:14:23,596 | INFO     | job summary report
[2025-06-29 08:14:55] 2025-06-29 12:14:23,596 | INFO     | --------------------------------------------------
[2025-06-29 08:14:55] 2025-06-29 12:14:23,596 | INFO     | PanDA job id: 6712975220
[2025-06-29 08:14:55] 2025-06-29 12:14:23,596 | INFO     | task id: 45400284
[2025-06-29 08:14:55] 2025-06-29 12:14:23,597 | INFO     | errors: (none)
[2025-06-29 08:14:55] 2025-06-29 12:14:23,597 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-29 08:14:55] 2025-06-29 12:14:23,597 | INFO     | pilot state: finished 
[2025-06-29 08:14:55] 2025-06-29 12:14:23,597 | INFO     | transexitcode: 0
[2025-06-29 08:14:55] 2025-06-29 12:14:23,597 | INFO     | exeerrorcode: 0
[2025-06-29 08:14:55] 2025-06-29 12:14:23,597 | INFO     | exeerrordiag: 
[2025-06-29 08:14:55] 2025-06-29 12:14:23,598 | INFO     | exitcode: 0
[2025-06-29 08:14:55] 2025-06-29 12:14:23,598 | INFO     | exitmsg: OK
[2025-06-29 08:14:55] 2025-06-29 12:14:23,598 | INFO     | cpuconsumptiontime: 61049 s
[2025-06-29 08:14:55] 2025-06-29 12:14:23,598 | INFO     | nevents: 400
[2025-06-29 08:14:55] 2025-06-29 12:14:23,598 | INFO     | neventsw: 0
[2025-06-29 08:14:55] 2025-06-29 12:14:23,598 | INFO     | pid: 25900
[2025-06-29 08:14:55] 2025-06-29 12:14:23,599 | INFO     | pgrp: 25900
[2025-06-29 08:14:55] 2025-06-29 12:14:23,599 | INFO     | corecount: 12
[2025-06-29 08:14:55] 2025-06-29 12:14:23,599 | INFO     | event service: False
[2025-06-29 08:14:55] 2025-06-29 12:14:23,599 | INFO     | sizes: {0: 2366482, 1: 2366681, 5: 2366943, 11: 2366999, 5662: 2393689, 5663: 2402687, 5664: 2402871, 5671: 2403065}
[2025-06-29 08:14:55] 2025-06-29 12:14:23,599 | INFO     | --------------------------------------------------
[2025-06-29 08:14:55] 2025-06-29 12:14:23,599 | INFO     | 
[2025-06-29 08:14:55] 2025-06-29 12:14:23,600 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-29 08:14:55] 2025-06-29 12:14:23,671 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,671 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,671 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,671 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,672 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,672 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,672 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,672 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,672 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,672 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,673 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,673 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,673 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,673 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,673 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,673 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,674 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,674 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-29 08:14:55] 2025-06-29 12:14:23,674 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,674 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-29 08:14:55] 2025-06-29 12:14:23,674 | INFO     | job 6712975220 has completed (purged errors)
[2025-06-29 08:14:55] 2025-06-29 12:14:23,675 | INFO     | overall cleanup function is called
[2025-06-29 08:14:55] 2025-06-29 12:14:24,682 | INFO     | --- collectZombieJob: --- 10, [25900]
[2025-06-29 08:14:55] 2025-06-29 12:14:24,683 | INFO     | zombie collector waiting for pid 25900
[2025-06-29 08:14:55] 2025-06-29 12:14:24,683 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-29 08:14:55] 2025-06-29 12:14:24,683 | INFO     | collected zombie processes
[2025-06-29 08:14:55] 2025-06-29 12:14:24,683 | INFO     | will attempt to kill all subprocesses of pid=25900
[2025-06-29 08:14:55] 2025-06-29 12:14:24,772 | INFO     | process IDs to be killed: [25900] (in reverse order)
[2025-06-29 08:14:55] 2025-06-29 12:14:24,823 | WARNING  | found no corresponding commands to process id(s)
[2025-06-29 08:14:55] 2025-06-29 12:14:24,824 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-29 08:14:55] 2025-06-29 12:14:24,827 | INFO     | did not find any defunct processes belonging to 25900
[2025-06-29 08:14:55] 2025-06-29 12:14:24,831 | INFO     | did not find any defunct processes belonging to 25900
[2025-06-29 08:14:55] 2025-06-29 12:14:24,831 | INFO     | ready for new job
[2025-06-29 08:14:55] 2025-06-29 12:14:24,831 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-29 08:14:55] 2025-06-29 12:14:24,833 | INFO     | ***************************************
[2025-06-29 08:14:55] 2025-06-29 12:14:24,833 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-29 08:14:55] 2025-06-29 12:14:24,833 | INFO     | ***************************************
[2025-06-29 08:14:55] 2025-06-29 12:14:24,833 | INFO     | 
[2025-06-29 08:14:55] 2025-06-29 12:14:24,834 | INFO     | architecture information:
[2025-06-29 08:14:55] 2025-06-29 12:14:24,835 | INFO     | executing command: cat /etc/os-release
[2025-06-29 08:14:55] 2025-06-29 12:14:24,850 | INFO     | cat /etc/os-release:
[2025-06-29 08:14:55] NAME="CentOS Linux"
[2025-06-29 08:14:55] VERSION="7 (Core)"
[2025-06-29 08:14:55] ID="centos"
[2025-06-29 08:14:55] ID_LIKE="rhel fedora"
[2025-06-29 08:14:55] VERSION_ID="7"
[2025-06-29 08:14:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-29 08:14:55] ANSI_COLOR="0;31"
[2025-06-29 08:14:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-29 08:14:55] HOME_URL="https://www.centos.org/"
[2025-06-29 08:14:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-29 08:14:55] 
[2025-06-29 08:14:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-29 08:14:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-29 08:14:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-29 08:14:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-29 08:14:55] 
[2025-06-29 08:14:55] 2025-06-29 12:14:24,850 | INFO     | ***************************************
[2025-06-29 08:14:55] 2025-06-29 12:14:25,353 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-29 08:14:55] 2025-06-29 12:14:25,371 | INFO     | sufficient remaining disk space (29196550144 B)
[2025-06-29 08:14:55] 2025-06-29 12:14:25,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-29 08:14:55] 2025-06-29 12:14:25,371 | INFO     | current server update state: UPDATING_FINAL
[2025-06-29 08:14:55] 2025-06-29 12:14:25,371 | INFO     | update_server=False
[2025-06-29 08:14:55] 2025-06-29 12:14:25,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-29 08:14:55] 2025-06-29 12:14:25,372 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-29 08:14:55] 2025-06-29 12:14:25,390 | INFO     | all data control threads have been joined
[2025-06-29 08:14:55] 2025-06-29 12:14:25,697 | INFO     | all job control threads have been joined
[2025-06-29 08:14:55] 2025-06-29 12:14:25,723 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-29 08:14:55] 2025-06-29 12:14:25,723 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-29 08:14:55] 2025-06-29 12:14:25,723 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-29 08:14:55] 2025-06-29 12:14:25,723 | INFO     | will abort loop
[2025-06-29 08:14:55] 2025-06-29 12:14:26,198 | INFO     | all payload control threads have been joined
[2025-06-29 08:14:55] 2025-06-29 12:14:26,377 | INFO     | [job] retrieve thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:26,378 | INFO     | [job] queue monitor thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:26,396 | INFO     | [data] control thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:26,443 | INFO     | [payload] execute_payloads thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:26,703 | INFO     | [job] control thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:26,728 | INFO     | [job] job monitor thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:26,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-29 08:14:55] 2025-06-29 12:14:26,973 | INFO     | [data] copytool_in thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:27,204 | INFO     | [payload] control thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:27,225 | INFO     | [payload] validate_post thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:27,276 | INFO     | [payload] failed_post thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:27,653 | INFO     | [job] validate thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:27,715 | INFO     | [job] create_data_payload thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:27,720 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-29 08:14:55] 2025-06-29 12:14:27,755 | INFO     | [payload] validate_pre thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:28,840 | INFO     | [data] copytool_out thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:31,725 | INFO     | [data] queue_monitor thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:35,673 | INFO     | job.realtimelogging is not enabled
[2025-06-29 08:14:55] 2025-06-29 12:14:36,674 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-29 08:14:55] 2025-06-29 12:14:38,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139666828617536)>', '<ExcThread(monitor, started 139666388920064)>']
[2025-06-29 08:14:55] 2025-06-29 12:14:43,077 | INFO     | all workflow threads have been joined
[2025-06-29 08:14:55] 2025-06-29 12:14:43,077 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-29 08:14:55] 2025-06-29 12:14:43,077 | INFO     | traces error code: 0
[2025-06-29 08:14:55] 2025-06-29 12:14:43,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-29 08:14:55] 2025-06-29 12:14:55,577 | INFO     | PID=19363 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-29 08:14:55] 2025-06-29 12:14:55,577 | INFO     | found 0 job(s) in 20 queues
[2025-06-29 08:14:55] 2025-06-29 12:14:55,578 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-29 08:14:55] 2025-06-29 12:14:55,578 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-29 08:14:55] 2025-06-29 12:14:55,578 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-29 08:14:55] 2025-06-29 12:14:55,578 | INFO     | [monitor] control thread has ended
[2025-06-29 08:14:55] 2025-06-29 12:14:55,673 [wrapper] ==== pilot stdout END ====
[2025-06-29 08:14:55] 2025-06-29 12:14:55,677 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-29 08:14:55] 2025-06-29 12:14:55,681 [wrapper] pilotpid: 19363
[2025-06-29 08:14:55] 2025-06-29 12:14:55,685 [wrapper] Pilot exit status: 0
[2025-06-29 08:14:55] 2025-06-29 12:14:55,700 [wrapper] pandaids: 6712975220
[2025-06-29 08:14:55] 2025-06-29 12:14:55,739 [wrapper] cleanup supervisor_pilot 24582 19364
[2025-06-29 08:14:55] 2025-06-29 12:14:55,743 [wrapper] Test setup, not cleaning
[2025-06-29 08:14:55] 2025-06-29 12:14:55,747 [wrapper] apfmon messages muted
[2025-06-29 08:14:55] 2025-06-29 12:14:55,751 [wrapper] ==== wrapper stdout END ====
[2025-06-29 08:14:55] 2025-06-29 12:14:55,755 [wrapper] ==== wrapper stderr END ====
[2025-06-29 08:14:55]  *** Error codes and diagnostics ***
[2025-06-29 08:14:55]     "exeErrorCode": 0,
[2025-06-29 08:14:55]     "exeErrorDiag": "",
[2025-06-29 08:14:55]     "pilotErrorCode": 0,
[2025-06-29 08:14:55]     "pilotErrorDiag": "",
[2025-06-29 08:14:55]  *** Listing of results directory ***
[2025-06-29 08:14:55] total 524300
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas    530466 Jun 29 06:17 pilot3.tar.gz
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas      5112 Jun 29 06:38 queuedata.json
[2025-06-29 08:14:55] -rwx------ 1 boincer umatlas     36245 Jun 29 06:38 runpilot2-wrapper.sh
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas       100 Jun 29 06:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-29 08:14:55] -rwxr-xr-x 1 boincer umatlas      7986 Jun 29 06:39 run_atlas
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas       105 Jun 29 06:39 job.xml
[2025-06-29 08:14:55] -rw-r--r-- 2 boincer umatlas 294754790 Jun 29 06:39 EVNT.45400282._000004.pool.root.1
[2025-06-29 08:14:55] -rw-r--r-- 2 boincer umatlas     15095 Jun 29 06:39 start_atlas.sh
[2025-06-29 08:14:55] drwxrwx--x 2 boincer umatlas      4096 Jun 29 06:39 shared
[2025-06-29 08:14:55] -rw-r--r-- 2 boincer umatlas    542888 Jun 29 06:39 input.tar.gz
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas         0 Jun 29 06:39 boinc_lockfile
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas      2606 Jun 29 06:39 pandaJob.out
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas    970684 Jun 29 06:39 agis_schedconf.cvmfs.json
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas   1574086 Jun 29 06:39 agis_ddmendpoints.agis.ALL.json
[2025-06-29 08:14:55] drwx------ 4 boincer umatlas      4096 Jun 29 06:39 pilot3
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas      5867 Jun 29 08:13 init_data.xml
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas       529 Jun 29 08:13 boinc_task_state.xml
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas 236492609 Jun 29 08:13 HITS.45400284._000076.pool.root.1
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas      1060 Jun 29 08:14 memory_monitor_summary.json
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas    358863 Jun 29 08:14 log.45400284._000076.job.log.tgz.1
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas      7838 Jun 29 08:14 heartbeat.json
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas        27 Jun 29 08:14 wrapper_checkpoint.txt
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas      8192 Jun 29 08:14 boinc_mmap_file
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas        95 Jun 29 08:14 pilot_heartbeat.json
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas       745 Jun 29 08:14 pilotlog.txt
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas    535547 Jun 29 08:14 log.45400284._000076.job.log.1
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas       357 Jun 29 08:14 output.list
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas       620 Jun 29 08:14 runtime_log
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas    911360 Jun 29 08:14 result.tar.gz
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas      8662 Jun 29 08:14 runtime_log.err
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas       659 Jun 29 08:14 fWoLDm0b4p7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhS4KDmrhtPzm.diag
[2025-06-29 08:14:55] -rw-r--r-- 1 boincer umatlas     21902 Jun 29 08:14 stderr.txt
[2025-06-29 08:14:55] HITS file was successfully produced:
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas 236492609 Jun 29 08:13 shared/HITS.pool.root.1
[2025-06-29 08:14:55]  *** Contents of shared directory: ***
[2025-06-29 08:14:55] total 520248
[2025-06-29 08:14:55] -rw-r--r-- 2 boincer umatlas 294754790 Jun 29 06:39 ATLAS.root_0
[2025-06-29 08:14:55] -rw-r--r-- 2 boincer umatlas     15095 Jun 29 06:39 start_atlas.sh
[2025-06-29 08:14:55] -rw-r--r-- 2 boincer umatlas    542888 Jun 29 06:39 input.tar.gz
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas 236492609 Jun 29 08:13 HITS.pool.root.1
[2025-06-29 08:14:55] -rw------- 1 boincer umatlas    911360 Jun 29 08:14 result.tar.gz
08:14:57 (15758): run_atlas exited; CPU time 61013.265245
08:14:57 (15758): called boinc_finish(0)

</stderr_txt>
]]>

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