Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
19:56:06 (1802760): wrapper (7.7.26015): starting
19:56:06 (1802760): wrapper: running run_atlas (--nthreads 4)
[2025-06-29 19:56:06] Arguments: --nthreads 4
[2025-06-29 19:56:06] Threads: 4
[2025-06-29 19:56:06] Checking for CVMFS
[2025-06-29 19:56:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-29 19:56:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-29 19:56:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-29 19:56:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-29 19:56:06] 2.13.0.0 11758 2493 48716 147724 3 56 32047199 33554433 0 130560 0 454297 99.979 70715 786 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2025-06-29 19:56:06] CVMFS is ok
[2025-06-29 19:56:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-29 19:56:06] Checking for apptainer binary...
[2025-06-29 19:56:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-29 19:56:06] Running /usr/bin/apptainer --version
[2025-06-29 19:56:06] apptainer version 1.4.0
[2025-06-29 19:56:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-29 19:56:06] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2025-06-29 19:56:06] apptainer works
[2025-06-29 19:56:06] Set ATHENA_PROC_NUMBER=4
[2025-06-29 19:56:06] Set ATHENA_CORE_NUMBER=4
[2025-06-29 19:56:06] Starting ATLAS job with PandaID=6712921896
[2025-06-29 19:56:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-29 21:30:55]  *** The last 200 lines of the pilot log: ***
[2025-06-29 21:30:55]  is_altstaged=None
[2025-06-29 21:30:55]  is_tar=False
[2025-06-29 21:30:55]  lfn=log.45399760._000043.job.log.tgz.1
[2025-06-29 21:30:55]  mtime=0
[2025-06-29 21:30:55]  protocol_id=None
[2025-06-29 21:30:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-29 21:30:55]  replicas=None
[2025-06-29 21:30:55]  scope=mc23_13p6TeV
[2025-06-29 21:30:55]  status=None
[2025-06-29 21:30:55]  status_code=0
[2025-06-29 21:30:55]  storage_token=
[2025-06-29 21:30:55]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6712921896/log.45399760._000043.job.log.tgz.1
[2025-06-29 21:30:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d0/73/log.45399760._000043.job.log.tgz.1
[2025-06-29 21:30:55]  workdir=None
[2025-06-29 21:30:55] ]
[2025-06-29 21:30:55] 2025-06-29 18:30:39,129 | INFO     | transferring file log.45399760._000043.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6712921896/log.45399760._000043.job.log.tgz.1 to /home/ek/BOINC/slots/
[2025-06-29 21:30:55] 2025-06-29 18:30:39,129 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6712921896/log.45399760._000043.job.log.tgz.1 /home/ek/BOINC/slots/1/log.45399760._000043.job
[2025-06-29 21:30:55] 2025-06-29 18:30:39,139 | INFO     | adding to output.list: log.45399760._000043.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d0/73/log.45399760._000043.job.log.tg
[2025-06-29 21:30:55] 2025-06-29 18:30:39,140 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-29 21:30:55] 2025-06-29 18:30:39,140 | INFO     | summary of transferred files:
[2025-06-29 21:30:55] 2025-06-29 18:30:39,140 | INFO     |  -- lfn=log.45399760._000043.job.log.tgz.1, status_code=0, status=transferred
[2025-06-29 21:30:55] 2025-06-29 18:30:39,140 | INFO     | stage-out finished correctly
[2025-06-29 21:30:55] 2025-06-29 18:30:39,171 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-29 21:30:55] 2025-06-29 18:30:39,550 | WARNING  | process 1813207 can no longer be monitored (due to stat problems) - aborting
[2025-06-29 21:30:55] 2025-06-29 18:30:39,550 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6712921896/memory_monitor_summary.json (trf name=prmon)
[2025-06-29 21:30:55] 2025-06-29 18:30:39,633 | INFO     | number of running child processes to parent process 1813207: 1
[2025-06-29 21:30:55] 2025-06-29 18:30:39,633 | INFO     | maximum number of monitored processes: 6
[2025-06-29 21:30:55] 2025-06-29 18:30:41,465 | INFO     | job 6712921896 has state=finished
[2025-06-29 21:30:55] 2025-06-29 18:30:41,465 | INFO     | preparing for final server update for job 6712921896 in state='finished'
[2025-06-29 21:30:55] 2025-06-29 18:30:41,465 | INFO     | this job has now completed (state=finished)
[2025-06-29 21:30:55] 2025-06-29 18:30:41,465 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-29 21:30:55] 2025-06-29 18:30:41,465 | INFO     | log transfer has been attempted: DONE
[2025-06-29 21:30:55] 2025-06-29 18:30:41,465 | INFO     | job 6712921896 has finished - writing final server update
[2025-06-29 21:30:55] 2025-06-29 18:30:41,465 | INFO     | total number of processed events: 400 (read)
[2025-06-29 21:30:55] 2025-06-29 18:30:41,466 | INFO     | executing command: lscpu
[2025-06-29 21:30:55] 2025-06-29 18:30:41,480 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-29 21:30:55] 2025-06-29 18:30:42,136 | INFO     | monitor loop #432: job 0:6712921896 is in state 'finished'
[2025-06-29 21:30:55] 2025-06-29 18:30:42,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-29 21:30:55] 2025-06-29 18:30:43,305 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-29 21:30:55] 2025-06-29 18:30:43,308 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3806.9589999999994
[2025-06-29 21:30:55] 2025-06-29 18:30:43,310 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6712921896/memory_monitor_summary.json (trf name=prmon)
[2025-06-29 21:30:55] 2025-06-29 18:30:43,311 | INFO     | extracted standard info from prmon json
[2025-06-29 21:30:55] 2025-06-29 18:30:43,311 | INFO     | extracted standard memory fields from prmon json
[2025-06-29 21:30:55] 2025-06-29 18:30:43,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-29 21:30:55] 2025-06-29 18:30:43,311 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-29 21:30:55] 2025-06-29 18:30:43,311 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | fitting pss+swap vs Time
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | sum of square deviations: 197203697.5
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | sum of deviations: -17334476140.0
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | mean x: 1751219088.5
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | mean y: 2500279.093023256
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | -- intersect: 153937065859.51678
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | intersect: 153937065859.51678
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | chi2: 0.18175080262689935
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | -- intersect: 153937065859.51678
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | current memory leak: -87.90 B/s (using 86 data points, chi2=0.18)
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | could have reported an average CPU frequency of 4016 MHz (7 samples)
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | ..............................
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | . Timing measurements:
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | . get job = 0 s
[2025-06-29 21:30:55] 2025-06-29 18:30:43,312 | INFO     | . initial setup = 1 s
[2025-06-29 21:30:55] 2025-06-29 18:30:43,313 | INFO     | . payload setup = 3 s
[2025-06-29 21:30:55] 2025-06-29 18:30:43,313 | INFO     | . stage-in = 0 s
[2025-06-29 21:30:55] 2025-06-29 18:30:43,313 | INFO     | . payload execution = 5646 s
[2025-06-29 21:30:55] 2025-06-29 18:30:43,313 | INFO     | . stage-out = 0 s
[2025-06-29 21:30:55] 2025-06-29 18:30:43,313 | INFO     | . log creation = 0 s
[2025-06-29 21:30:55] 2025-06-29 18:30:43,313 | INFO     | ..............................
[2025-06-29 21:30:55] 2025-06-29 18:30:43,345 | INFO     | 
[2025-06-29 21:30:55] 2025-06-29 18:30:43,345 | INFO     | job summary report
[2025-06-29 21:30:55] 2025-06-29 18:30:43,345 | INFO     | --------------------------------------------------
[2025-06-29 21:30:55] 2025-06-29 18:30:43,345 | INFO     | PanDA job id: 6712921896
[2025-06-29 21:30:55] 2025-06-29 18:30:43,345 | INFO     | task id: 45399760
[2025-06-29 21:30:55] 2025-06-29 18:30:43,345 | INFO     | errors: (none)
[2025-06-29 21:30:55] 2025-06-29 18:30:43,345 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | pilot state: finished 
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | transexitcode: 0
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | exeerrorcode: 0
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | exeerrordiag: 
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | exitcode: 0
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | exitmsg: OK
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | cpuconsumptiontime: 21229 s
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | nevents: 400
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | neventsw: 0
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | pid: 1813207
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | pgrp: 1813207
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | corecount: 4
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | event service: False
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | sizes: {0: 2366654, 2: 2366916, 11: 2366944, 5653: 2393769, 5654: 2402822, 5658: 2402960}
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | --------------------------------------------------
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | 
[2025-06-29 21:30:55] 2025-06-29 18:30:43,346 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | job 6712921896 has completed (purged errors)
[2025-06-29 21:30:55] 2025-06-29 18:30:43,356 | INFO     | overall cleanup function is called
[2025-06-29 21:30:55] 2025-06-29 18:30:44,362 | INFO     | --- collectZombieJob: --- 10, [1813207]
[2025-06-29 21:30:55] 2025-06-29 18:30:44,362 | INFO     | zombie collector waiting for pid 1813207
[2025-06-29 21:30:55] 2025-06-29 18:30:44,362 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-29 21:30:55] 2025-06-29 18:30:44,362 | INFO     | collected zombie processes
[2025-06-29 21:30:55] 2025-06-29 18:30:44,362 | INFO     | will attempt to kill all subprocesses of pid=1813207
[2025-06-29 21:30:55] 2025-06-29 18:30:44,461 | INFO     | process IDs to be killed: [1813207] (in reverse order)
[2025-06-29 21:30:55] 2025-06-29 18:30:44,493 | WARNING  | found no corresponding commands to process id(s)
[2025-06-29 21:30:55] 2025-06-29 18:30:44,493 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-29 21:30:55] 2025-06-29 18:30:44,497 | INFO     | did not find any defunct processes belonging to 1813207
[2025-06-29 21:30:55] 2025-06-29 18:30:44,499 | INFO     | did not find any defunct processes belonging to 1813207
[2025-06-29 21:30:55] 2025-06-29 18:30:44,499 | INFO     | ready for new job
[2025-06-29 21:30:55] 2025-06-29 18:30:44,499 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-29 21:30:55] 2025-06-29 18:30:44,500 | INFO     | ***************************************
[2025-06-29 21:30:55] 2025-06-29 18:30:44,500 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-29 21:30:55] 2025-06-29 18:30:44,500 | INFO     | ***************************************
[2025-06-29 21:30:55] 2025-06-29 18:30:44,500 | INFO     | 
[2025-06-29 21:30:55] 2025-06-29 18:30:44,501 | INFO     | architecture information:
[2025-06-29 21:30:55] 2025-06-29 18:30:44,501 | INFO     | executing command: cat /etc/os-release
[2025-06-29 21:30:55] 2025-06-29 18:30:44,509 | INFO     | cat /etc/os-release:
[2025-06-29 21:30:55] NAME="CentOS Linux"
[2025-06-29 21:30:55] VERSION="7 (Core)"
[2025-06-29 21:30:55] ID="centos"
[2025-06-29 21:30:55] ID_LIKE="rhel fedora"
[2025-06-29 21:30:55] VERSION_ID="7"
[2025-06-29 21:30:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-29 21:30:55] ANSI_COLOR="0;31"
[2025-06-29 21:30:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-29 21:30:55] HOME_URL="https://www.centos.org/"
[2025-06-29 21:30:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-29 21:30:55] 
[2025-06-29 21:30:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-29 21:30:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-29 21:30:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-29 21:30:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-29 21:30:55] 
[2025-06-29 21:30:55] 2025-06-29 18:30:44,509 | INFO     | ***************************************
[2025-06-29 21:30:55] 2025-06-29 18:30:45,012 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2025-06-29 21:30:55] 2025-06-29 18:30:45,020 | INFO     | sufficient remaining disk space (138158276608 B)
[2025-06-29 21:30:55] 2025-06-29 18:30:45,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-29 21:30:55] 2025-06-29 18:30:45,020 | INFO     | current server update state: UPDATING_FINAL
[2025-06-29 21:30:55] 2025-06-29 18:30:45,020 | INFO     | update_server=False
[2025-06-29 21:30:55] 2025-06-29 18:30:45,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-29 21:30:55] 2025-06-29 18:30:45,020 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-29 21:30:55] 2025-06-29 18:30:45,020 | INFO     | found 0 job(s) in 20 queues
[2025-06-29 21:30:55] 2025-06-29 18:30:45,020 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-29 21:30:55] 2025-06-29 18:30:45,020 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-29 21:30:55] 2025-06-29 18:30:45,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-29 21:30:55] 2025-06-29 18:30:45,021 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-29 21:30:55] 2025-06-29 18:30:45,025 | INFO     | all job control threads have been joined
[2025-06-29 21:30:55] 2025-06-29 18:30:45,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-29 21:30:55] 2025-06-29 18:30:45,528 | INFO     | all data control threads have been joined
[2025-06-29 21:30:55] 2025-06-29 18:30:45,644 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-29 21:30:55] 2025-06-29 18:30:45,644 | INFO     | aborting loop
[2025-06-29 21:30:55] 2025-06-29 18:30:46,025 | INFO     | [job] retrieve thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:46,026 | INFO     | [job] queue monitor thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:46,030 | INFO     | [job] control thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:46,431 | INFO     | all payload control threads have been joined
[2025-06-29 21:30:55] 2025-06-29 18:30:46,443 | INFO     | [job] validate thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:46,479 | INFO     | [payload] execute_payloads thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:46,532 | INFO     | [data] control thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:46,573 | INFO     | [job] create_data_payload thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:46,623 | INFO     | [payload] validate_pre thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:46,649 | INFO     | [job] job monitor thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:47,025 | INFO     | [data] copytool_out thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:47,064 | INFO     | [payload] failed_post thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:47,147 | INFO     | [data] copytool_in thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:47,436 | INFO     | [payload] control thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:47,517 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:47,577 | INFO     | [payload] validate_post thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:49,212 | INFO     | [data] queue_monitor thread has finished
[2025-06-29 21:30:55] 2025-06-29 18:30:50,603 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140493866239808)>', '<ExcThread(monitor, started 140493363058432)>']
[2025-06-29 21:30:55] 2025-06-29 18:30:51,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-29 21:30:55] 2025-06-29 18:30:51,046 | INFO     | [monitor] control thread has ended
[2025-06-29 21:30:55] 2025-06-29 18:30:55,629 | INFO     | all workflow threads have been joined
[2025-06-29 21:30:55] 2025-06-29 18:30:55,629 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-29 21:30:55] 2025-06-29 18:30:55,629 | INFO     | traces error code: 0
[2025-06-29 21:30:55] 2025-06-29 18:30:55,629 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-29 21:30:55] 2025-06-29 18:30:55,688 [wrapper] ==== pilot stdout END ====
[2025-06-29 21:30:55] 2025-06-29 18:30:55,690 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-29 21:30:55] 2025-06-29 18:30:55,691 [wrapper] pilotpid: 1806493
[2025-06-29 21:30:55] 2025-06-29 18:30:55,693 [wrapper] Pilot exit status: 0
[2025-06-29 21:30:55] 2025-06-29 18:30:55,699 [wrapper] pandaids: 6712921896
[2025-06-29 21:30:55] 2025-06-29 18:30:55,722 [wrapper] cleanup supervisor_pilot 1882742 1806494
[2025-06-29 21:30:55] 2025-06-29 18:30:55,724 [wrapper] Test setup, not cleaning
[2025-06-29 21:30:55] 2025-06-29 18:30:55,725 [wrapper] apfmon messages muted
[2025-06-29 21:30:55] 2025-06-29 18:30:55,727 [wrapper] ==== wrapper stdout END ====
[2025-06-29 21:30:55] 2025-06-29 18:30:55,728 [wrapper] ==== wrapper stderr END ====
[2025-06-29 21:30:55]  *** Error codes and diagnostics ***
[2025-06-29 21:30:55]     "exeErrorCode": 0,
[2025-06-29 21:30:55]     "exeErrorDiag": "",
[2025-06-29 21:30:55]     "pilotErrorCode": 0,
[2025-06-29 21:30:55]     "pilotErrorDiag": "",
[2025-06-29 21:30:55]  *** Listing of results directory ***
[2025-06-29 21:30:55] total 562512
[2025-06-29 21:30:55] -rw-r--r-- 1 ek ek    530466 Jun 29 11:40 pilot3.tar.gz
[2025-06-29 21:30:55] -rw-r--r-- 1 ek ek      5112 Jun 29 11:48 queuedata.json
[2025-06-29 21:30:55] -rwx------ 1 ek ek     36245 Jun 29 11:48 runpilot2-wrapper.sh
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek       100 Jun 29 19:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-29 21:30:55] -rwxr-xr-x 1 ek ek      7986 Jun 29 19:56 run_atlas
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek       105 Jun 29 19:56 job.xml
[2025-06-29 21:30:55] -rw-r--r-- 2 ek ek 308763642 Jun 29 19:56 EVNT.45399758._000002.pool.root.1
[2025-06-29 21:30:55] drwxrwx--x 2 ek ek      4096 Jun 29 19:56 shared
[2025-06-29 21:30:55] -rw-r--r-- 2 ek ek    542875 Jun 29 19:56 input.tar.gz
[2025-06-29 21:30:55] -rw-r--r-- 2 ek ek     15095 Jun 29 19:56 start_atlas.sh
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek         0 Jun 29 19:56 boinc_setup_complete
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek      9844 Jun 29 19:56 init_data.xml
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek         0 Jun 29 19:56 boinc_lockfile
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek      2602 Jun 29 19:56 pandaJob.out
[2025-06-29 21:30:55] -rw------- 1 ek ek    970665 Jun 29 19:56 agis_schedconf.cvmfs.json
[2025-06-29 21:30:55] -rw------- 1 ek ek   1574086 Jun 29 19:56 agis_ddmendpoints.agis.ALL.json
[2025-06-29 21:30:55] drwx------ 4 ek ek      4096 Jun 29 19:56 pilot3
[2025-06-29 21:30:55] -rw------- 1 ek ek        95 Jun 29 21:29 pilot_heartbeat.json
[2025-06-29 21:30:55] -rw------- 1 ek ek 261773411 Jun 29 21:30 HITS.45399760._000043.pool.root.1
[2025-06-29 21:30:55] -rw------- 1 ek ek      1036 Jun 29 21:30 memory_monitor_summary.json
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek        27 Jun 29 21:30 wrapper_checkpoint.txt
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek      8192 Jun 29 21:30 boinc_mmap_file
[2025-06-29 21:30:55] -rw------- 1 ek ek    262298 Jun 29 21:30 log.45399760._000043.job.log.tgz.1
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek       529 Jun 29 21:30 boinc_task_state.xml
[2025-06-29 21:30:55] -rw------- 1 ek ek      7780 Jun 29 21:30 heartbeat.json
[2025-06-29 21:30:55] -rw------- 1 ek ek      4481 Jun 29 21:30 pilotlog.txt
[2025-06-29 21:30:55] -rw------- 1 ek ek    543819 Jun 29 21:30 log.45399760._000043.job.log.1
[2025-06-29 21:30:55] -rw------- 1 ek ek       357 Jun 29 21:30 output.list
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek       620 Jun 29 21:30 runtime_log
[2025-06-29 21:30:55] -rw------- 1 ek ek    829440 Jun 29 21:30 result.tar.gz
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek      8855 Jun 29 21:30 runtime_log.err
[2025-06-29 21:30:55] -rw------- 1 ek ek       665 Jun 29 21:30 bIeLDmNt2p7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBL4KDmgHtyvm.diag
[2025-06-29 21:30:55] -rw-rw-r-- 1 ek ek     21278 Jun 29 21:30 stderr.txt
[2025-06-29 21:30:55] HITS file was successfully produced:
[2025-06-29 21:30:55] -rw------- 1 ek ek 261773411 Jun 29 21:30 shared/HITS.pool.root.1
[2025-06-29 21:30:55]  *** Contents of shared directory: ***
[2025-06-29 21:30:55] total 558536
[2025-06-29 21:30:55] -rw-r--r-- 2 ek ek 308763642 Jun 29 19:56 ATLAS.root_0
[2025-06-29 21:30:55] -rw-r--r-- 2 ek ek    542875 Jun 29 19:56 input.tar.gz
[2025-06-29 21:30:55] -rw-r--r-- 2 ek ek     15095 Jun 29 19:56 start_atlas.sh
[2025-06-29 21:30:55] -rw------- 1 ek ek 261773411 Jun 29 21:30 HITS.pool.root.1
[2025-06-29 21:30:55] -rw------- 1 ek ek    829440 Jun 29 21:30 result.tar.gz
21:30:57 (1802760): run_atlas exited; CPU time 21272.374997
21:30:57 (1802760): called boinc_finish(0)

</stderr_txt>
]]>

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