Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
04:03:02 (2269041): wrapper (7.7.26015): starting
04:03:02 (2269041): wrapper: running run_atlas (--nthreads 4)
[2025-06-30 04:03:02] Arguments: --nthreads 4
[2025-06-30 04:03:02] Threads: 4
[2025-06-30 04:03:02] Checking for CVMFS
[2025-06-30 04:03:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-30 04:03:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-30 04:03:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-30 04:03:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-30 04:03:03] 2.13.0.0 11758 2980 36932 147736 2 56 32170528 33554432 0 130560 0 862465 99.985 86737 792 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2025-06-30 04:03:03] CVMFS is ok
[2025-06-30 04:03:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-30 04:03:03] Checking for apptainer binary...
[2025-06-30 04:03:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-30 04:03:03] Running /usr/bin/apptainer --version
[2025-06-30 04:03:03] apptainer version 1.4.0
[2025-06-30 04:03:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-30 04:03:03] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2025-06-30 04:03:03] apptainer works
[2025-06-30 04:03:03] Set ATHENA_PROC_NUMBER=4
[2025-06-30 04:03:03] Set ATHENA_CORE_NUMBER=4
[2025-06-30 04:03:03] Starting ATLAS job with PandaID=6712921895
[2025-06-30 04:03:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-30 05:39:45]  *** The last 200 lines of the pilot log: ***
[2025-06-30 05:39:45]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-30 05:39:45]  is_altstaged=None
[2025-06-30 05:39:45]  is_tar=False
[2025-06-30 05:39:45]  lfn=log.45399760._000042.job.log.tgz.1
[2025-06-30 05:39:45]  mtime=0
[2025-06-30 05:39:45]  protocol_id=None
[2025-06-30 05:39:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-30 05:39:45]  replicas=None
[2025-06-30 05:39:45]  scope=mc23_13p6TeV
[2025-06-30 05:39:45]  status=None
[2025-06-30 05:39:45]  status_code=0
[2025-06-30 05:39:45]  storage_token=
[2025-06-30 05:39:45]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6712921895/log.45399760._000042.job.log.tgz.1
[2025-06-30 05:39:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dd/21/log.45399760._000042.job.log.tgz.1
[2025-06-30 05:39:45]  workdir=None
[2025-06-30 05:39:45] ]
[2025-06-30 05:39:45] 2025-06-30 02:39:08,795 | INFO     | transferring file log.45399760._000042.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6712921895/log.45399760._000042.job.log.tgz.1 to /home/ek/BOINC/slots/
[2025-06-30 05:39:45] 2025-06-30 02:39:08,795 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6712921895/log.45399760._000042.job.log.tgz.1 /home/ek/BOINC/slots/1/log.45399760._000042.job
[2025-06-30 05:39:45] 2025-06-30 02:39:08,806 | INFO     | adding to output.list: log.45399760._000042.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/dd/21/log.45399760._000042.job.log.tg
[2025-06-30 05:39:45] 2025-06-30 02:39:08,806 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-30 05:39:45] 2025-06-30 02:39:08,806 | INFO     | summary of transferred files:
[2025-06-30 05:39:45] 2025-06-30 02:39:08,806 | INFO     |  -- lfn=log.45399760._000042.job.log.tgz.1, status_code=0, status=transferred
[2025-06-30 05:39:45] 2025-06-30 02:39:08,806 | INFO     | stage-out finished correctly
[2025-06-30 05:39:45] 2025-06-30 02:39:09,890 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-30 05:39:45] 2025-06-30 02:39:10,580 | INFO     | job 6712921895 has state=finished
[2025-06-30 05:39:45] 2025-06-30 02:39:10,580 | INFO     | preparing for final server update for job 6712921895 in state='finished'
[2025-06-30 05:39:45] 2025-06-30 02:39:10,580 | INFO     | this job has now completed (state=finished)
[2025-06-30 05:39:45] 2025-06-30 02:39:10,580 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-30 05:39:45] 2025-06-30 02:39:10,580 | INFO     | log transfer has been attempted: DONE
[2025-06-30 05:39:45] 2025-06-30 02:39:10,580 | INFO     | job 6712921895 has finished - writing final server update
[2025-06-30 05:39:45] 2025-06-30 02:39:10,580 | INFO     | total number of processed events: 400 (read)
[2025-06-30 05:39:45] 2025-06-30 02:39:10,581 | INFO     | executing command: lscpu
[2025-06-30 05:39:45] 2025-06-30 02:39:10,594 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-30 05:39:45] 2025-06-30 02:39:11,551 | WARNING  | process 2279501 can no longer be monitored (due to stat problems) - aborting
[2025-06-30 05:39:45] 2025-06-30 02:39:11,551 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6712921895/memory_monitor_summary.json (trf name=prmon)
[2025-06-30 05:39:45] 2025-06-30 02:39:11,650 | INFO     | number of running child processes to parent process 2279501: 1
[2025-06-30 05:39:45] 2025-06-30 02:39:11,650 | INFO     | maximum number of monitored processes: 6
[2025-06-30 05:39:45] 2025-06-30 02:39:12,366 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-30 05:39:45] 2025-06-30 02:39:12,368 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4004.844083333333
[2025-06-30 05:39:45] 2025-06-30 02:39:12,370 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6712921895/memory_monitor_summary.json (trf name=prmon)
[2025-06-30 05:39:45] 2025-06-30 02:39:12,370 | INFO     | extracted standard info from prmon json
[2025-06-30 05:39:45] 2025-06-30 02:39:12,370 | INFO     | extracted standard memory fields from prmon json
[2025-06-30 05:39:45] 2025-06-30 02:39:12,370 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-30 05:39:45] 2025-06-30 02:39:12,370 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-30 05:39:45] 2025-06-30 02:39:12,370 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-30 05:39:45] 2025-06-30 02:39:12,371 | INFO     | fitting pss+swap vs Time
[2025-06-30 05:39:45] 2025-06-30 02:39:12,371 | INFO     | sum of square deviations: 211285822.0
[2025-06-30 05:39:45] 2025-06-30 02:39:12,371 | INFO     | sum of deviations: -3956051940.5000005
[2025-06-30 05:39:45] 2025-06-30 02:39:12,371 | INFO     | mean x: 1751248366.5
[2025-06-30 05:39:45] 2025-06-30 02:39:12,371 | INFO     | mean y: 2423781.0795454546
[2025-06-30 05:39:45] 2025-06-30 02:39:12,371 | INFO     | -- intersect: 32792269465.044937
[2025-06-30 05:39:45] 2025-06-30 02:39:12,371 | INFO     | intersect: 32792269465.044937
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | chi2: 0.09011626174968378
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | -- intersect: 32792269465.044937
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | current memory leak: -18.72 B/s (using 88 data points, chi2=0.09)
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | could have reported an average CPU frequency of 4062 MHz (7 samples)
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | ..............................
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | . Timing measurements:
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | . get job = 0 s
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | . initial setup = 1 s
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | . payload setup = 3 s
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | . stage-in = 0 s
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | . payload execution = 5739 s
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | . stage-out = 0 s
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | . log creation = 0 s
[2025-06-30 05:39:45] 2025-06-30 02:39:12,372 | INFO     | ..............................
[2025-06-30 05:39:45] 2025-06-30 02:39:12,527 | INFO     | 
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | job summary report
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | --------------------------------------------------
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | PanDA job id: 6712921895
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | task id: 45399760
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | errors: (none)
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | pilot state: finished 
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | transexitcode: 0
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | exeerrorcode: 0
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | exeerrordiag: 
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | exitcode: 0
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | exitmsg: OK
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | cpuconsumptiontime: 21653 s
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | nevents: 400
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | neventsw: 0
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | pid: 2279501
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | pgrp: 2279501
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | corecount: 4
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | event service: False
[2025-06-30 05:39:45] 2025-06-30 02:39:12,528 | INFO     | sizes: {0: 2366654, 2: 2366916, 11: 2366944, 5746: 2393824, 5747: 2402822, 5748: 2402878, 5750: 2403200}
[2025-06-30 05:39:45] 2025-06-30 02:39:12,529 | INFO     | --------------------------------------------------
[2025-06-30 05:39:45] 2025-06-30 02:39:12,529 | INFO     | 
[2025-06-30 05:39:45] 2025-06-30 02:39:12,529 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | job 6712921895 has completed (purged errors)
[2025-06-30 05:39:45] 2025-06-30 02:39:12,539 | INFO     | overall cleanup function is called
[2025-06-30 05:39:45] 2025-06-30 02:39:13,545 | INFO     | --- collectZombieJob: --- 10, [2279501]
[2025-06-30 05:39:45] 2025-06-30 02:39:13,545 | INFO     | zombie collector waiting for pid 2279501
[2025-06-30 05:39:45] 2025-06-30 02:39:13,545 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-30 05:39:45] 2025-06-30 02:39:13,545 | INFO     | collected zombie processes
[2025-06-30 05:39:45] 2025-06-30 02:39:13,545 | INFO     | will attempt to kill all subprocesses of pid=2279501
[2025-06-30 05:39:45] 2025-06-30 02:39:13,641 | INFO     | process IDs to be killed: [2279501] (in reverse order)
[2025-06-30 05:39:45] 2025-06-30 02:39:13,672 | WARNING  | found no corresponding commands to process id(s)
[2025-06-30 05:39:45] 2025-06-30 02:39:13,672 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-30 05:39:45] 2025-06-30 02:39:13,676 | INFO     | did not find any defunct processes belonging to 2279501
[2025-06-30 05:39:45] 2025-06-30 02:39:13,679 | INFO     | did not find any defunct processes belonging to 2279501
[2025-06-30 05:39:45] 2025-06-30 02:39:13,679 | INFO     | ready for new job
[2025-06-30 05:39:45] 2025-06-30 02:39:13,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-30 05:39:45] 2025-06-30 02:39:13,680 | INFO     | ***************************************
[2025-06-30 05:39:45] 2025-06-30 02:39:13,680 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-30 05:39:45] 2025-06-30 02:39:13,680 | INFO     | ***************************************
[2025-06-30 05:39:45] 2025-06-30 02:39:13,680 | INFO     | 
[2025-06-30 05:39:45] 2025-06-30 02:39:13,681 | INFO     | architecture information:
[2025-06-30 05:39:45] 2025-06-30 02:39:13,681 | INFO     | executing command: cat /etc/os-release
[2025-06-30 05:39:45] 2025-06-30 02:39:13,688 | INFO     | cat /etc/os-release:
[2025-06-30 05:39:45] NAME="CentOS Linux"
[2025-06-30 05:39:45] VERSION="7 (Core)"
[2025-06-30 05:39:45] ID="centos"
[2025-06-30 05:39:45] ID_LIKE="rhel fedora"
[2025-06-30 05:39:45] VERSION_ID="7"
[2025-06-30 05:39:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-30 05:39:45] ANSI_COLOR="0;31"
[2025-06-30 05:39:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-30 05:39:45] HOME_URL="https://www.centos.org/"
[2025-06-30 05:39:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-30 05:39:45] 
[2025-06-30 05:39:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-30 05:39:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-30 05:39:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-30 05:39:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-30 05:39:45] 
[2025-06-30 05:39:45] 2025-06-30 02:39:13,688 | INFO     | ***************************************
[2025-06-30 05:39:45] 2025-06-30 02:39:14,191 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2025-06-30 05:39:45] 2025-06-30 02:39:14,200 | INFO     | sufficient remaining disk space (139999576064 B)
[2025-06-30 05:39:45] 2025-06-30 02:39:14,200 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-30 05:39:45] 2025-06-30 02:39:14,200 | INFO     | current server update state: UPDATING_FINAL
[2025-06-30 05:39:45] 2025-06-30 02:39:14,200 | INFO     | update_server=False
[2025-06-30 05:39:45] 2025-06-30 02:39:14,200 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-30 05:39:45] 2025-06-30 02:39:14,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-30 05:39:45] 2025-06-30 02:39:14,345 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-30 05:39:45] 2025-06-30 02:39:15,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-30 05:39:45] 2025-06-30 02:39:15,158 | INFO     | aborting loop
[2025-06-30 05:39:45] 2025-06-30 02:39:15,203 | INFO     | all payload control threads have been joined
[2025-06-30 05:39:45] 2025-06-30 02:39:15,205 | INFO     | [job] queue monitor thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:15,206 | INFO     | [job] retrieve thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:15,242 | INFO     | all data control threads have been joined
[2025-06-30 05:39:45] 2025-06-30 02:39:15,359 | INFO     | [payload] failed_post thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:15,732 | INFO     | all job control threads have been joined
[2025-06-30 05:39:45] 2025-06-30 02:39:15,887 | INFO     | [data] copytool_in thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:15,894 | INFO     | [payload] validate_post thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:15,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-30 05:39:45] 2025-06-30 02:39:16,164 | INFO     | [job] job monitor thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:16,208 | INFO     | [payload] control thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:16,246 | INFO     | [data] control thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:16,350 | INFO     | [data] copytool_out thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:16,395 | INFO     | [payload] execute_payloads thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:16,559 | INFO     | [job] validate thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:16,689 | INFO     | [payload] validate_pre thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:16,693 | INFO     | [job] create_data_payload thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:16,737 | INFO     | [job] control thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:19,929 | INFO     | [data] queue_monitor thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:24,933 | INFO     | job.realtimelogging is not enabled
[2025-06-30 05:39:45] 2025-06-30 02:39:25,938 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-30 05:39:45] 2025-06-30 02:39:27,739 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140201455056704)>', '<ExcThread(monitor, started 140201173157632)>']
[2025-06-30 05:39:45] 2025-06-30 02:39:32,764 | INFO     | all workflow threads have been joined
[2025-06-30 05:39:45] 2025-06-30 02:39:32,764 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-30 05:39:45] 2025-06-30 02:39:32,765 | INFO     | traces error code: 0
[2025-06-30 05:39:45] 2025-06-30 02:39:32,765 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-30 05:39:45] 2025-06-30 02:39:45,163 | INFO     | PID=2272768 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-30 05:39:45] 2025-06-30 02:39:45,163 | INFO     | found 0 job(s) in 20 queues
[2025-06-30 05:39:45] 2025-06-30 02:39:45,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-30 05:39:45] 2025-06-30 02:39:45,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-30 05:39:45] 2025-06-30 02:39:45,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-30 05:39:45] 2025-06-30 02:39:45,163 | INFO     | [monitor] control thread has ended
[2025-06-30 05:39:45] 2025-06-30 02:39:45,259 [wrapper] ==== pilot stdout END ====
[2025-06-30 05:39:45] 2025-06-30 02:39:45,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-30 05:39:45] 2025-06-30 02:39:45,262 [wrapper] pilotpid: 2272768
[2025-06-30 05:39:45] 2025-06-30 02:39:45,263 [wrapper] Pilot exit status: 0
[2025-06-30 05:39:45] 2025-06-30 02:39:45,270 [wrapper] pandaids: 6712921895
[2025-06-30 05:39:45] 2025-06-30 02:39:45,294 [wrapper] cleanup supervisor_pilot 2348076 2272769
[2025-06-30 05:39:45] 2025-06-30 02:39:45,296 [wrapper] Test setup, not cleaning
[2025-06-30 05:39:45] 2025-06-30 02:39:45,298 [wrapper] apfmon messages muted
[2025-06-30 05:39:45] 2025-06-30 02:39:45,300 [wrapper] ==== wrapper stdout END ====
[2025-06-30 05:39:45] 2025-06-30 02:39:45,301 [wrapper] ==== wrapper stderr END ====
[2025-06-30 05:39:45]  *** Error codes and diagnostics ***
[2025-06-30 05:39:45]     "exeErrorCode": 0,
[2025-06-30 05:39:45]     "exeErrorDiag": "",
[2025-06-30 05:39:45]     "pilotErrorCode": 0,
[2025-06-30 05:39:45]     "pilotErrorDiag": "",
[2025-06-30 05:39:45]  *** Listing of results directory ***
[2025-06-30 05:39:45] total 571060
[2025-06-30 05:39:45] -rw-r--r-- 1 ek ek    530466 Jun 29 11:40 pilot3.tar.gz
[2025-06-30 05:39:45] -rw-r--r-- 1 ek ek      5112 Jun 29 11:48 queuedata.json
[2025-06-30 05:39:45] -rwx------ 1 ek ek     36245 Jun 29 11:48 runpilot2-wrapper.sh
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek       100 Jun 30 04:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-30 05:39:45] -rwxr-xr-x 1 ek ek      7986 Jun 30 04:03 run_atlas
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek       105 Jun 30 04:03 job.xml
[2025-06-30 05:39:45] -rw-r--r-- 2 ek ek 308763642 Jun 30 04:03 EVNT.45399758._000002.pool.root.1
[2025-06-30 05:39:45] drwxrwx--x 2 ek ek      4096 Jun 30 04:03 shared
[2025-06-30 05:39:45] -rw-r--r-- 2 ek ek    542875 Jun 30 04:03 input.tar.gz
[2025-06-30 05:39:45] -rw-r--r-- 2 ek ek     15095 Jun 30 04:03 start_atlas.sh
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek         0 Jun 30 04:03 boinc_setup_complete
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek      9844 Jun 30 04:03 init_data.xml
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek         0 Jun 30 04:03 boinc_lockfile
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek      2602 Jun 30 04:03 pandaJob.out
[2025-06-30 05:39:45] -rw------- 1 ek ek    970673 Jun 30 04:03 agis_schedconf.cvmfs.json
[2025-06-30 05:39:45] -rw------- 1 ek ek   1574086 Jun 30 04:03 agis_ddmendpoints.agis.ALL.json
[2025-06-30 05:39:45] drwx------ 4 ek ek      4096 Jun 30 04:03 pilot3
[2025-06-30 05:39:45] -rw------- 1 ek ek 270522568 Jun 30 05:38 HITS.45399760._000042.pool.root.1
[2025-06-30 05:39:45] -rw------- 1 ek ek        95 Jun 30 05:38 pilot_heartbeat.json
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek       529 Jun 30 05:39 boinc_task_state.xml
[2025-06-30 05:39:45] -rw------- 1 ek ek      1053 Jun 30 05:39 memory_monitor_summary.json
[2025-06-30 05:39:45] -rw------- 1 ek ek    262383 Jun 30 05:39 log.45399760._000042.job.log.tgz.1
[2025-06-30 05:39:45] -rw------- 1 ek ek      7809 Jun 30 05:39 heartbeat.json
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek      8192 Jun 30 05:39 boinc_mmap_file
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek        27 Jun 30 05:39 wrapper_checkpoint.txt
[2025-06-30 05:39:45] -rw------- 1 ek ek       747 Jun 30 05:39 pilotlog.txt
[2025-06-30 05:39:45] -rw------- 1 ek ek    551455 Jun 30 05:39 log.45399760._000042.job.log.1
[2025-06-30 05:39:45] -rw------- 1 ek ek       357 Jun 30 05:39 output.list
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek       620 Jun 30 05:39 runtime_log
[2025-06-30 05:39:45] -rw------- 1 ek ek    829440 Jun 30 05:39 result.tar.gz
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek      8855 Jun 30 05:39 runtime_log.err
[2025-06-30 05:39:45] -rw------- 1 ek ek       669 Jun 30 05:39 J3cLDmNt2p7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAL4KDmbeRjbm.diag
[2025-06-30 05:39:45] -rw-rw-r-- 1 ek ek     21289 Jun 30 05:39 stderr.txt
[2025-06-30 05:39:45] HITS file was successfully produced:
[2025-06-30 05:39:45] -rw------- 1 ek ek 270522568 Jun 30 05:38 shared/HITS.pool.root.1
[2025-06-30 05:39:45]  *** Contents of shared directory: ***
[2025-06-30 05:39:45] total 567080
[2025-06-30 05:39:45] -rw-r--r-- 2 ek ek 308763642 Jun 30 04:03 ATLAS.root_0
[2025-06-30 05:39:45] -rw-r--r-- 2 ek ek    542875 Jun 30 04:03 input.tar.gz
[2025-06-30 05:39:45] -rw-r--r-- 2 ek ek     15095 Jun 30 04:03 start_atlas.sh
[2025-06-30 05:39:45] -rw------- 1 ek ek 270522568 Jun 30 05:38 HITS.pool.root.1
[2025-06-30 05:39:45] -rw------- 1 ek ek    829440 Jun 30 05:39 result.tar.gz
05:39:47 (2269041): run_atlas exited; CPU time 21686.224943
05:39:47 (2269041): called boinc_finish(0)

</stderr_txt>
]]>

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