Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:40:14 (1418819): wrapper (7.7.26015): starting
09:40:14 (1418819): wrapper: running run_atlas (--nthreads 4)
[2025-06-29 09:40:14] Arguments: --nthreads 4
[2025-06-29 09:40:14] Threads: 4
[2025-06-29 09:40:14] Checking for CVMFS
[2025-06-29 09:40:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-29 09:40:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-29 09:40:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-29 09:40:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-29 09:40:15] 2.9.2.0 1390912 95 52844 147710 1 55 33357187 36864000 0 130560 0 72246 99.975 6634 1118 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-29 09:40:15] CVMFS is ok
[2025-06-29 09:40:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-29 09:40:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-29 09:40:15] Further information can be found at the LHC@home message board.
[2025-06-29 09:40:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-29 09:40:15] Checking for apptainer binary...
[2025-06-29 09:40:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-29 09:40:15] Running /usr/bin/apptainer --version
[2025-06-29 09:40:15] apptainer version 1.4.1-1.1
[2025-06-29 09:40:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-29 09:40:15] thA332a
[2025-06-29 09:40:15] apptainer works
[2025-06-29 09:40:15] Set ATHENA_PROC_NUMBER=4
[2025-06-29 09:40:15] Set ATHENA_CORE_NUMBER=4
[2025-06-29 09:40:15] Starting ATLAS job with PandaID=6712770543
[2025-06-29 09:40:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-29 11:07:56]  *** The last 200 lines of the pilot log: ***
[2025-06-29 11:07:56]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6712770543/log.45400006._000021.job.log.tgz.1
[2025-06-29 11:07:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/37/log.45400006._000021.job.log.tgz.1
[2025-06-29 11:07:56]  workdir=None
[2025-06-29 11:07:56] ]
[2025-06-29 11:07:56] 2025-06-29 09:07:19,910 | INFO     | transferring file log.45400006._000021.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6712770543/log.45400006._000021.job.log.tgz.1 to /local/data/boinc/
[2025-06-29 11:07:56] 2025-06-29 09:07:19,910 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6712770543/log.45400006._000021.job.log.tgz.1 /local/data/boinc/slots/0/log.45400006._0000
[2025-06-29 11:07:56] 2025-06-29 09:07:19,928 | INFO     | adding to output.list: log.45400006._000021.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/37/log.45400006._000021.job.log.tg
[2025-06-29 11:07:56] 2025-06-29 09:07:19,929 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-29 11:07:56] 2025-06-29 09:07:19,929 | INFO     | summary of transferred files:
[2025-06-29 11:07:56] 2025-06-29 09:07:19,929 | INFO     |  -- lfn=log.45400006._000021.job.log.tgz.1, status_code=0, status=transferred
[2025-06-29 11:07:56] 2025-06-29 09:07:19,929 | INFO     | stage-out finished correctly
[2025-06-29 11:07:56] 2025-06-29 09:07:19,969 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-29 11:07:56] 2025-06-29 09:07:20,009 | INFO     | job 6712770543 has state=finished
[2025-06-29 11:07:56] 2025-06-29 09:07:20,009 | INFO     | preparing for final server update for job 6712770543 in state='finished'
[2025-06-29 11:07:56] 2025-06-29 09:07:20,009 | INFO     | this job has now completed (state=finished)
[2025-06-29 11:07:56] 2025-06-29 09:07:20,009 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-29 11:07:56] 2025-06-29 09:07:20,009 | INFO     | log transfer has been attempted: DONE
[2025-06-29 11:07:56] 2025-06-29 09:07:20,009 | INFO     | job 6712770543 has finished - writing final server update
[2025-06-29 11:07:56] 2025-06-29 09:07:20,010 | INFO     | total number of processed events: 400 (read)
[2025-06-29 11:07:56] 2025-06-29 09:07:20,010 | INFO     | executing command: lscpu
[2025-06-29 11:07:56] 2025-06-29 09:07:20,029 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-29 11:07:56] 2025-06-29 09:07:21,460 | WARNING  | process 1429147 can no longer be monitored (due to stat problems) - aborting
[2025-06-29 11:07:56] 2025-06-29 09:07:21,461 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6712770543/memory_monitor_summary.json (trf name=prmon)
[2025-06-29 11:07:56] 2025-06-29 09:07:21,461 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6712770543/memory_monitor_summary.json (trf name=prmon)
[2025-06-29 11:07:56] 2025-06-29 09:07:21,462 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2715004 B
[2025-06-29 11:07:56] 2025-06-29 09:07:21,462 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16016 B
[2025-06-29 11:07:56] 2025-06-29 09:07:21,462 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-29 11:07:56] 2025-06-29 09:07:22,160 | INFO     | PID=1422525 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-29 11:07:56] 2025-06-29 09:07:24,808 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-29 11:07:56] 2025-06-29 09:07:24,813 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3503.179
[2025-06-29 11:07:56] 2025-06-29 09:07:24,815 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6712770543/memory_monitor_summary.json (trf name=prmon)
[2025-06-29 11:07:56] 2025-06-29 09:07:24,815 | INFO     | extracted standard info from prmon json
[2025-06-29 11:07:56] 2025-06-29 09:07:24,815 | INFO     | extracted standard memory fields from prmon json
[2025-06-29 11:07:56] 2025-06-29 09:07:24,815 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-29 11:07:56] 2025-06-29 09:07:24,816 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-29 11:07:56] 2025-06-29 09:07:24,817 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-29 11:07:56] 2025-06-29 09:07:24,818 | INFO     | fitting pss+swap vs Time
[2025-06-29 11:07:56] 2025-06-29 09:07:24,818 | INFO     | sum of square deviations: 152858680.0
[2025-06-29 11:07:56] 2025-06-29 09:07:24,818 | INFO     | sum of deviations: -10519489650.000002
[2025-06-29 11:07:56] 2025-06-29 09:07:24,818 | INFO     | mean x: 1751185530.0
[2025-06-29 11:07:56] 2025-06-29 09:07:24,818 | INFO     | mean y: 2587925.417721519
[2025-06-29 11:07:56] 2025-06-29 09:07:24,818 | INFO     | -- intersect: 120516372671.33315
[2025-06-29 11:07:56] 2025-06-29 09:07:24,818 | INFO     | intersect: 120516372671.33315
[2025-06-29 11:07:56] 2025-06-29 09:07:24,818 | INFO     | chi2: 0.05035084362255366
[2025-06-29 11:07:56] 2025-06-29 09:07:24,818 | INFO     | -- intersect: 120516372671.33315
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | current memory leak: -68.82 B/s (using 79 data points, chi2=0.05)
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | could have reported an average CPU frequency of 3689 MHz (6 samples)
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | ..............................
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | . Timing measurements:
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | . get job = 0 s
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | . initial setup = 1 s
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | . payload setup = 5 s
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | . stage-in = 0 s
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | . payload execution = 5192 s
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | . stage-out = 0 s
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | . log creation = 0 s
[2025-06-29 11:07:56] 2025-06-29 09:07:24,819 | INFO     | ..............................
[2025-06-29 11:07:56] 2025-06-29 09:07:24,838 | INFO     | sufficient remaining disk space (322313388032 B)
[2025-06-29 11:07:56] 2025-06-29 09:07:24,854 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-29 11:07:56] 2025-06-29 09:07:24,861 | INFO     | 
[2025-06-29 11:07:56] 2025-06-29 09:07:24,861 | INFO     | job summary report
[2025-06-29 11:07:56] 2025-06-29 09:07:24,861 | INFO     | --------------------------------------------------
[2025-06-29 11:07:56] 2025-06-29 09:07:24,861 | INFO     | PanDA job id: 6712770543
[2025-06-29 11:07:56] 2025-06-29 09:07:24,861 | INFO     | task id: 45400006
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | errors: (none)
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | pilot state: finished 
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | transexitcode: 0
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | exeerrorcode: 0
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | exeerrordiag: 
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | exitcode: 0
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | exitmsg: OK
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | cpuconsumptiontime: 19839 s
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | nevents: 400
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | neventsw: 0
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | pid: 1429147
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | pgrp: 1429147
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | corecount: 4
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | event service: False
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | sizes: {0: 2366654, 4: 2366916, 11: 2366944, 5201: 2393537, 5202: 2393536, 5203: 2402780, 5208: 2402918}
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | --------------------------------------------------
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | 
[2025-06-29 11:07:56] 2025-06-29 09:07:24,862 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-29 11:07:56] 2025-06-29 09:07:24,866 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6712770543: 3015318 B (within 2537553920 B limit)
[2025-06-29 11:07:56] 2025-06-29 09:07:24,866 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6712770543/HITS.45400006._000021.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-29 11:07:56] 2025-06-29 09:07:24,867 | INFO     | total size of present files: 0 B (workdir size: 3015318 B)
[2025-06-29 11:07:56] 2025-06-29 09:07:24,867 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6712770543/HITS.45400006._000021.pool.root.1 since it does not exist
[2025-06-29 11:07:56] 2025-06-29 09:07:24,880 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,880 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,880 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,880 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,880 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,880 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,880 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,880 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,880 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,880 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | job 6712770543 has completed (purged errors)
[2025-06-29 11:07:56] 2025-06-29 09:07:24,881 | INFO     | overall cleanup function is called
[2025-06-29 11:07:56] 2025-06-29 09:07:24,915 | INFO     | number of running child processes to parent process 1429147: 1
[2025-06-29 11:07:56] 2025-06-29 09:07:24,915 | INFO     | maximum number of monitored processes: 6
[2025-06-29 11:07:56] 2025-06-29 09:07:24,915 | INFO     | aborting job monitoring since job object (job id=6712770543) has expired
[2025-06-29 11:07:56] 2025-06-29 09:07:25,888 | INFO     | --- collectZombieJob: --- 10, [1429147]
[2025-06-29 11:07:56] 2025-06-29 09:07:25,889 | INFO     | zombie collector waiting for pid 1429147
[2025-06-29 11:07:56] 2025-06-29 09:07:25,889 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-29 11:07:56] 2025-06-29 09:07:25,889 | INFO     | collected zombie processes
[2025-06-29 11:07:56] 2025-06-29 09:07:25,889 | INFO     | will attempt to kill all subprocesses of pid=1429147
[2025-06-29 11:07:56] 2025-06-29 09:07:25,932 | INFO     | process IDs to be killed: [1429147] (in reverse order)
[2025-06-29 11:07:56] 2025-06-29 09:07:25,965 | WARNING  | found no corresponding commands to process id(s)
[2025-06-29 11:07:56] 2025-06-29 09:07:25,966 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-29 11:07:56] 2025-06-29 09:07:25,967 | INFO     | did not find any defunct processes belonging to 1429147
[2025-06-29 11:07:56] 2025-06-29 09:07:25,969 | INFO     | did not find any defunct processes belonging to 1429147
[2025-06-29 11:07:56] 2025-06-29 09:07:25,969 | INFO     | ready for new job
[2025-06-29 11:07:56] 2025-06-29 09:07:25,969 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-29 11:07:56] 2025-06-29 09:07:25,969 | INFO     | ***************************************
[2025-06-29 11:07:56] 2025-06-29 09:07:25,969 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-29 11:07:56] 2025-06-29 09:07:25,969 | INFO     | ***************************************
[2025-06-29 11:07:56] 2025-06-29 09:07:25,970 | INFO     | 
[2025-06-29 11:07:56] 2025-06-29 09:07:25,970 | INFO     | architecture information:
[2025-06-29 11:07:56] 2025-06-29 09:07:25,970 | INFO     | executing command: cat /etc/os-release
[2025-06-29 11:07:56] 2025-06-29 09:07:25,984 | INFO     | cat /etc/os-release:
[2025-06-29 11:07:56] NAME="CentOS Linux"
[2025-06-29 11:07:56] VERSION="7 (Core)"
[2025-06-29 11:07:56] ID="centos"
[2025-06-29 11:07:56] ID_LIKE="rhel fedora"
[2025-06-29 11:07:56] VERSION_ID="7"
[2025-06-29 11:07:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-29 11:07:56] ANSI_COLOR="0;31"
[2025-06-29 11:07:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-29 11:07:56] HOME_URL="https://www.centos.org/"
[2025-06-29 11:07:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-29 11:07:56] 
[2025-06-29 11:07:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-29 11:07:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-29 11:07:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-29 11:07:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-29 11:07:56] 
[2025-06-29 11:07:56] 2025-06-29 09:07:25,984 | INFO     | ***************************************
[2025-06-29 11:07:56] 2025-06-29 09:07:26,487 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-29 11:07:56] 2025-06-29 09:07:26,505 | INFO     | sufficient remaining disk space (322317582336 B)
[2025-06-29 11:07:56] 2025-06-29 09:07:26,505 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-29 11:07:56] 2025-06-29 09:07:26,505 | INFO     | current server update state: UPDATING_FINAL
[2025-06-29 11:07:56] 2025-06-29 09:07:26,505 | INFO     | update_server=False
[2025-06-29 11:07:56] 2025-06-29 09:07:26,505 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-29 11:07:56] 2025-06-29 09:07:26,505 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-29 11:07:56] 2025-06-29 09:07:26,505 | INFO     | aborting loop
[2025-06-29 11:07:56] 2025-06-29 09:07:26,505 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-29 11:07:56] 2025-06-29 09:07:26,506 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-29 11:07:56] 2025-06-29 09:07:26,585 | INFO     | all job control threads have been joined
[2025-06-29 11:07:56] 2025-06-29 09:07:26,886 | INFO     | all payload control threads have been joined
[2025-06-29 11:07:56] 2025-06-29 09:07:27,298 | INFO     | all data control threads have been joined
[2025-06-29 11:07:56] 2025-06-29 09:07:27,511 | INFO     | [job] job monitor thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:27,511 | INFO     | [job] retrieve thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:27,511 | INFO     | [job] queue monitor thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:27,591 | INFO     | [job] control thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:27,769 | INFO     | [data] copytool_in thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:27,890 | INFO     | [payload] control thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:27,981 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-29 11:07:56] 2025-06-29 09:07:28,050 | INFO     | [payload] failed_post thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:28,304 | INFO     | [data] control thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:28,591 | INFO     | [job] validate thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:28,655 | INFO     | [payload] validate_post thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:28,739 | INFO     | [job] create_data_payload thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:28,840 | INFO     | [payload] validate_pre thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:28,912 | INFO     | [payload] execute_payloads thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:29,987 | INFO     | [data] copytool_out thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:30,513 | INFO     | [data] queue_monitor thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:37,235 | INFO     | job.realtimelogging is not enabled
[2025-06-29 11:07:56] 2025-06-29 09:07:38,241 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-29 11:07:56] 2025-06-29 09:07:40,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140212930668352)>', '<ExcThread(monitor, started 140212059485952)>']
[2025-06-29 11:07:56] 2025-06-29 09:07:45,082 | INFO     | all workflow threads have been joined
[2025-06-29 11:07:56] 2025-06-29 09:07:45,083 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-29 11:07:56] 2025-06-29 09:07:45,083 | INFO     | traces error code: 0
[2025-06-29 11:07:56] 2025-06-29 09:07:45,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-29 11:07:56] 2025-06-29 09:07:56,290 | INFO     | PID=1422525 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-29 11:07:56] 2025-06-29 09:07:56,291 | INFO     | found 0 job(s) in 20 queues
[2025-06-29 11:07:56] 2025-06-29 09:07:56,291 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-29 11:07:56] 2025-06-29 09:07:56,291 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-29 11:07:56] 2025-06-29 09:07:56,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-29 11:07:56] 2025-06-29 09:07:56,291 | INFO     | [monitor] control thread has ended
[2025-06-29 11:07:56] 2025-06-29 09:07:56,367 [wrapper] ==== pilot stdout END ====
[2025-06-29 11:07:56] 2025-06-29 09:07:56,371 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-29 11:07:56] 2025-06-29 09:07:56,375 [wrapper] pilotpid: 1422525
[2025-06-29 11:07:56] 2025-06-29 09:07:56,379 [wrapper] Pilot exit status: 0
[2025-06-29 11:07:56] 2025-06-29 09:07:56,391 [wrapper] pandaids: 6712770543
[2025-06-29 11:07:56] 2025-06-29 09:07:56,414 [wrapper] cleanup supervisor_pilot 1441333 1422526
[2025-06-29 11:07:56] 2025-06-29 09:07:56,418 [wrapper] Test setup, not cleaning
[2025-06-29 11:07:56] 2025-06-29 09:07:56,422 [wrapper] apfmon messages muted
[2025-06-29 11:07:56] 2025-06-29 09:07:56,426 [wrapper] ==== wrapper stdout END ====
[2025-06-29 11:07:56] 2025-06-29 09:07:56,430 [wrapper] ==== wrapper stderr END ====
[2025-06-29 11:07:56]  *** Error codes and diagnostics ***
[2025-06-29 11:07:56]     "exeErrorCode": 0,
[2025-06-29 11:07:56]     "exeErrorDiag": "",
[2025-06-29 11:07:56]     "pilotErrorCode": 0,
[2025-06-29 11:07:56]     "pilotErrorDiag": "",
[2025-06-29 11:07:56]  *** Listing of results directory ***
[2025-06-29 11:07:56] total 515236
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc    530466 Jun 29 07:23 pilot3.tar.gz
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc      5112 Jun 29 08:02 queuedata.json
[2025-06-29 11:07:56] -rwx------ 1 boinc boinc     36245 Jun 29 08:02 runpilot2-wrapper.sh
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc       100 Jun 29 09:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-29 11:07:56] -rwxr-xr-x 1 boinc boinc      7986 Jun 29 09:40 run_atlas
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc       105 Jun 29 09:40 job.xml
[2025-06-29 11:07:56] -rw-r--r-- 2 boinc boinc 291516169 Jun 29 09:40 EVNT.45400003._000001.pool.root.1
[2025-06-29 11:07:56] -rw-r--r-- 2 boinc boinc    542883 Jun 29 09:40 input.tar.gz
[2025-06-29 11:07:56] -rw-r--r-- 2 boinc boinc     15095 Jun 29 09:40 start_atlas.sh
[2025-06-29 11:07:56] drwxrwx--x 2 boinc boinc      4096 Jun 29 09:40 shared
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc         0 Jun 29 09:40 boinc_setup_complete
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc      6449 Jun 29 09:40 init_data.xml
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc         0 Jun 29 09:40 boinc_lockfile
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc      2602 Jun 29 09:40 pandaJob.out
[2025-06-29 11:07:56] -rw------- 1 boinc boinc    970668 Jun 29 09:40 agis_schedconf.cvmfs.json
[2025-06-29 11:07:56] -rw------- 1 boinc boinc   1574086 Jun 29 09:40 agis_ddmendpoints.agis.ALL.json
[2025-06-29 11:07:56] drwx------ 4 boinc boinc      4096 Jun 29 09:40 pilot3
[2025-06-29 11:07:56] -rw------- 1 boinc boinc 230699534 Jun 29 11:06 HITS.45400006._000021.pool.root.1
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc       529 Jun 29 11:07 boinc_task_state.xml
[2025-06-29 11:07:56] -rw------- 1 boinc boinc      1024 Jun 29 11:07 memory_monitor_summary.json
[2025-06-29 11:07:56] -rw------- 1 boinc boinc    259417 Jun 29 11:07 log.45400006._000021.job.log.tgz.1
[2025-06-29 11:07:56] -rw------- 1 boinc boinc      7755 Jun 29 11:07 heartbeat.json
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc      8192 Jun 29 11:07 boinc_mmap_file
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc        27 Jun 29 11:07 wrapper_checkpoint.txt
[2025-06-29 11:07:56] -rw------- 1 boinc boinc       747 Jun 29 11:07 pilotlog.txt
[2025-06-29 11:07:56] -rw------- 1 boinc boinc        95 Jun 29 11:07 pilot_heartbeat.json
[2025-06-29 11:07:56] -rw------- 1 boinc boinc    505787 Jun 29 11:07 log.45400006._000021.job.log.1
[2025-06-29 11:07:56] -rw------- 1 boinc boinc       357 Jun 29 11:07 output.list
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc       620 Jun 29 11:07 runtime_log
[2025-06-29 11:07:56] -rw------- 1 boinc boinc    788480 Jun 29 11:07 result.tar.gz
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc      8739 Jun 29 11:07 runtime_log.err
[2025-06-29 11:07:56] -rw------- 1 boinc boinc       659 Jun 29 11:07 oYFNDmRI0p7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmb63KDmje34dn.diag
[2025-06-29 11:07:56] -rw-r--r-- 1 boinc boinc     22671 Jun 29 11:07 stderr.txt
[2025-06-29 11:07:56] HITS file was successfully produced:
[2025-06-29 11:07:56] -rw------- 1 boinc boinc 230699534 Jun 29 11:06 shared/HITS.pool.root.1
[2025-06-29 11:07:56]  *** Contents of shared directory: ***
[2025-06-29 11:07:56] total 511308
[2025-06-29 11:07:56] -rw-r--r-- 2 boinc boinc 291516169 Jun 29 09:40 ATLAS.root_0
[2025-06-29 11:07:56] -rw-r--r-- 2 boinc boinc    542883 Jun 29 09:40 input.tar.gz
[2025-06-29 11:07:56] -rw-r--r-- 2 boinc boinc     15095 Jun 29 09:40 start_atlas.sh
[2025-06-29 11:07:56] -rw------- 1 boinc boinc 230699534 Jun 29 11:06 HITS.pool.root.1
[2025-06-29 11:07:56] -rw------- 1 boinc boinc    788480 Jun 29 11:07 result.tar.gz
11:07:57 (1418819): run_atlas exited; CPU time 19857.112380
11:07:57 (1418819): called boinc_finish(0)

</stderr_txt>
]]>

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