Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:33:30 (31521): wrapper (7.7.26015): starting
23:33:30 (31521): wrapper: running run_atlas (--nthreads 12)
[2025-06-28 23:33:30] Arguments: --nthreads 12
[2025-06-28 23:33:30] Threads: 12
[2025-06-28 23:33:30] Checking for CVMFS
[2025-06-28 23:33:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-28 23:33:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-28 23:33:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-28 23:33:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-28 23:33:31] 2.11.2.0 2924 71101 94484 147704 2 55 13032331 20275200 1 130560 0 25314629 99.964 8916506 10145 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-28 23:33:31] CVMFS is ok
[2025-06-28 23:33:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-28 23:33:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-28 23:33:31] Further information can be found at the LHC@home message board.
[2025-06-28 23:33:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-28 23:33:31] Checking for apptainer binary...
[2025-06-28 23:33:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-28 23:33:31] Running /usr/bin/apptainer --version
[2025-06-28 23:33:31] apptainer version 1.3.2-1.el7
[2025-06-28 23:33:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-28 23:33:32] c-205-28.aglt2.org
[2025-06-28 23:33:32] apptainer works
[2025-06-28 23:33:32] Set ATHENA_PROC_NUMBER=12
[2025-06-28 23:33:32] Set ATHENA_CORE_NUMBER=12
[2025-06-28 23:33:32] Starting ATLAS job with PandaID=6712702642
[2025-06-28 23:33:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-29 01:11:42]  *** The last 200 lines of the pilot log: ***
[2025-06-29 01:11:42]  lfn=log.45399143._000056.job.log.tgz.1
[2025-06-29 01:11:42]  mtime=0
[2025-06-29 01:11:42]  protocol_id=None
[2025-06-29 01:11:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-29 01:11:42]  replicas=None
[2025-06-29 01:11:42]  scope=mc23_13p6TeV
[2025-06-29 01:11:42]  status=None
[2025-06-29 01:11:42]  status_code=0
[2025-06-29 01:11:42]  storage_token=
[2025-06-29 01:11:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6712702642/log.45399143._000056.job.log.tgz.1
[2025-06-29 01:11:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/00/log.45399143._000056.job.log.tgz.1
[2025-06-29 01:11:42]  workdir=None
[2025-06-29 01:11:42] ]
[2025-06-29 01:11:42] 2025-06-29 05:11:03,475 | INFO     | transferring file log.45399143._000056.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6712702642/log.45399143._000056.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-29 01:11:42] 2025-06-29 05:11:03,475 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6712702642/log.45399143._000056.job.log.tgz.1 /tmp/boinchome/slots/0/log.45399143._000056.job
[2025-06-29 01:11:42] 2025-06-29 05:11:03,498 | INFO     | adding to output.list: log.45399143._000056.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/00/log.45399143._000056.job.log.tg
[2025-06-29 01:11:42] 2025-06-29 05:11:03,499 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-29 01:11:42] 2025-06-29 05:11:03,499 | INFO     | summary of transferred files:
[2025-06-29 01:11:42] 2025-06-29 05:11:03,500 | INFO     |  -- lfn=log.45399143._000056.job.log.tgz.1, status_code=0, status=transferred
[2025-06-29 01:11:42] 2025-06-29 05:11:03,500 | INFO     | stage-out finished correctly
[2025-06-29 01:11:42] 2025-06-29 05:11:04,055 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-29 01:11:42] 2025-06-29 05:11:04,452 | INFO     | job 6712702642 has state=finished
[2025-06-29 01:11:42] 2025-06-29 05:11:04,453 | INFO     | preparing for final server update for job 6712702642 in state='finished'
[2025-06-29 01:11:42] 2025-06-29 05:11:04,453 | INFO     | this job has now completed (state=finished)
[2025-06-29 01:11:42] 2025-06-29 05:11:04,453 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-29 01:11:42] 2025-06-29 05:11:04,454 | INFO     | log transfer has been attempted: DONE
[2025-06-29 01:11:42] 2025-06-29 05:11:04,454 | INFO     | job 6712702642 has finished - writing final server update
[2025-06-29 01:11:42] 2025-06-29 05:11:04,454 | INFO     | total number of processed events: 400 (read)
[2025-06-29 01:11:42] 2025-06-29 05:11:04,455 | INFO     | executing command: lscpu
[2025-06-29 01:11:42] 2025-06-29 05:11:04,480 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-29 01:11:42] 2025-06-29 05:11:04,693 | INFO     | 5841s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-29 01:11:42] 2025-06-29 05:11:05,780 | WARNING  | process 9306 can no longer be monitored (due to stat problems) - aborting
[2025-06-29 01:11:42] 2025-06-29 05:11:05,780 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6712702642/memory_monitor_summary.json (trf name=prmon)
[2025-06-29 01:11:42] 2025-06-29 05:11:05,970 | INFO     | PID=2824 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-29 01:11:42] 2025-06-29 05:11:05,982 | INFO     | number of running child processes to parent process 9306: 1
[2025-06-29 01:11:42] 2025-06-29 05:11:05,983 | INFO     | maximum number of monitored processes: 6
[2025-06-29 01:11:42] 2025-06-29 05:11:08,487 | INFO     | monitor loop #433: job 0:6712702642 is in state 'finished'
[2025-06-29 01:11:42] 2025-06-29 05:11:08,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-29 01:11:42] 2025-06-29 05:11:09,158 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-29 01:11:42] 2025-06-29 05:11:09,162 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-06-29 01:11:42] 2025-06-29 05:11:09,165 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6712702642/memory_monitor_summary.json (trf name=prmon)
[2025-06-29 01:11:42] 2025-06-29 05:11:09,166 | INFO     | extracted standard info from prmon json
[2025-06-29 01:11:42] 2025-06-29 05:11:09,166 | INFO     | extracted standard memory fields from prmon json
[2025-06-29 01:11:42] 2025-06-29 05:11:09,166 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-29 01:11:42] 2025-06-29 05:11:09,167 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-29 01:11:42] 2025-06-29 05:11:09,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-29 01:11:42] 2025-06-29 05:11:09,169 | INFO     | fitting pss+swap vs Time
[2025-06-29 01:11:42] 2025-06-29 05:11:09,170 | INFO     | sum of square deviations: 218571540.0
[2025-06-29 01:11:42] 2025-06-29 05:11:09,170 | INFO     | sum of deviations: -8289999979.000002
[2025-06-29 01:11:42] 2025-06-29 05:11:09,170 | INFO     | mean x: 1751171046.0
[2025-06-29 01:11:42] 2025-06-29 05:11:09,171 | INFO     | mean y: 2810407.438202247
[2025-06-29 01:11:42] 2025-06-29 05:11:09,171 | INFO     | -- intersect: 66421374940.43005
[2025-06-29 01:11:42] 2025-06-29 05:11:09,171 | INFO     | intersect: 66421374940.43005
[2025-06-29 01:11:42] 2025-06-29 05:11:09,171 | INFO     | chi2: 0.1196380266553187
[2025-06-29 01:11:42] 2025-06-29 05:11:09,171 | INFO     | -- intersect: 66421374940.43005
[2025-06-29 01:11:42] 2025-06-29 05:11:09,171 | INFO     | current memory leak: -37.93 B/s (using 89 data points, chi2=0.12)
[2025-06-29 01:11:42] 2025-06-29 05:11:09,172 | INFO     | could have reported an average CPU frequency of 2131 MHz (7 samples)
[2025-06-29 01:11:42] 2025-06-29 05:11:09,172 | INFO     | ..............................
[2025-06-29 01:11:42] 2025-06-29 05:11:09,172 | INFO     | . Timing measurements:
[2025-06-29 01:11:42] 2025-06-29 05:11:09,172 | INFO     | . get job = 0 s
[2025-06-29 01:11:42] 2025-06-29 05:11:09,172 | INFO     | . initial setup = 2 s
[2025-06-29 01:11:42] 2025-06-29 05:11:09,173 | INFO     | . payload setup = 9 s
[2025-06-29 01:11:42] 2025-06-29 05:11:09,173 | INFO     | . stage-in = 0 s
[2025-06-29 01:11:42] 2025-06-29 05:11:09,173 | INFO     | . payload execution = 5806 s
[2025-06-29 01:11:42] 2025-06-29 05:11:09,173 | INFO     | . stage-out = 0 s
[2025-06-29 01:11:42] 2025-06-29 05:11:09,173 | INFO     | . log creation = 0 s
[2025-06-29 01:11:42] 2025-06-29 05:11:09,173 | INFO     | ..............................
[2025-06-29 01:11:42] 2025-06-29 05:11:09,267 | INFO     | 
[2025-06-29 01:11:42] 2025-06-29 05:11:09,267 | INFO     | job summary report
[2025-06-29 01:11:42] 2025-06-29 05:11:09,267 | INFO     | --------------------------------------------------
[2025-06-29 01:11:42] 2025-06-29 05:11:09,267 | INFO     | PanDA job id: 6712702642
[2025-06-29 01:11:42] 2025-06-29 05:11:09,267 | INFO     | task id: 45399143
[2025-06-29 01:11:42] 2025-06-29 05:11:09,268 | INFO     | errors: (none)
[2025-06-29 01:11:42] 2025-06-29 05:11:09,268 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-29 01:11:42] 2025-06-29 05:11:09,268 | INFO     | pilot state: finished 
[2025-06-29 01:11:42] 2025-06-29 05:11:09,268 | INFO     | transexitcode: 0
[2025-06-29 01:11:42] 2025-06-29 05:11:09,268 | INFO     | exeerrorcode: 0
[2025-06-29 01:11:42] 2025-06-29 05:11:09,268 | INFO     | exeerrordiag: 
[2025-06-29 01:11:42] 2025-06-29 05:11:09,269 | INFO     | exitcode: 0
[2025-06-29 01:11:42] 2025-06-29 05:11:09,269 | INFO     | exitmsg: OK
[2025-06-29 01:11:42] 2025-06-29 05:11:09,269 | INFO     | cpuconsumptiontime: 62495 s
[2025-06-29 01:11:42] 2025-06-29 05:11:09,269 | INFO     | nevents: 400
[2025-06-29 01:11:42] 2025-06-29 05:11:09,269 | INFO     | neventsw: 0
[2025-06-29 01:11:42] 2025-06-29 05:11:09,269 | INFO     | pid: 9306
[2025-06-29 01:11:42] 2025-06-29 05:11:09,270 | INFO     | pgrp: 9306
[2025-06-29 01:11:42] 2025-06-29 05:11:09,270 | INFO     | corecount: 12
[2025-06-29 01:11:42] 2025-06-29 05:11:09,270 | INFO     | event service: False
[2025-06-29 01:11:42] 2025-06-29 05:11:09,270 | INFO     | sizes: {0: 2366490, 1: 2366689, 6: 2366951, 12: 2366979, 5819: 2393657, 5820: 2393656, 5822: 2402894, 5827: 2403032}
[2025-06-29 01:11:42] 2025-06-29 05:11:09,270 | INFO     | --------------------------------------------------
[2025-06-29 01:11:42] 2025-06-29 05:11:09,270 | INFO     | 
[2025-06-29 01:11:42] 2025-06-29 05:11:09,271 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-29 01:11:42] 2025-06-29 05:11:09,296 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,297 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,297 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,297 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,297 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,297 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,298 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,298 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,298 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,298 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,298 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,298 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,299 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,299 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,299 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,299 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,299 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,299 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-29 01:11:42] 2025-06-29 05:11:09,300 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,300 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-29 01:11:42] 2025-06-29 05:11:09,300 | INFO     | job 6712702642 has completed (purged errors)
[2025-06-29 01:11:42] 2025-06-29 05:11:09,300 | INFO     | overall cleanup function is called
[2025-06-29 01:11:42] 2025-06-29 05:11:10,309 | INFO     | --- collectZombieJob: --- 10, [9306]
[2025-06-29 01:11:42] 2025-06-29 05:11:10,309 | INFO     | zombie collector waiting for pid 9306
[2025-06-29 01:11:42] 2025-06-29 05:11:10,309 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-29 01:11:42] 2025-06-29 05:11:10,309 | INFO     | collected zombie processes
[2025-06-29 01:11:42] 2025-06-29 05:11:10,310 | INFO     | will attempt to kill all subprocesses of pid=9306
[2025-06-29 01:11:42] 2025-06-29 05:11:10,399 | INFO     | process IDs to be killed: [9306] (in reverse order)
[2025-06-29 01:11:42] 2025-06-29 05:11:10,450 | WARNING  | found no corresponding commands to process id(s)
[2025-06-29 01:11:42] 2025-06-29 05:11:10,450 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-29 01:11:42] 2025-06-29 05:11:10,454 | INFO     | did not find any defunct processes belonging to 9306
[2025-06-29 01:11:42] 2025-06-29 05:11:10,456 | INFO     | did not find any defunct processes belonging to 9306
[2025-06-29 01:11:42] 2025-06-29 05:11:10,456 | INFO     | ready for new job
[2025-06-29 01:11:42] 2025-06-29 05:11:10,456 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-29 01:11:42] 2025-06-29 05:11:10,458 | INFO     | ***************************************
[2025-06-29 01:11:42] 2025-06-29 05:11:10,458 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-29 01:11:42] 2025-06-29 05:11:10,458 | INFO     | ***************************************
[2025-06-29 01:11:42] 2025-06-29 05:11:10,458 | INFO     | 
[2025-06-29 01:11:42] 2025-06-29 05:11:10,459 | INFO     | architecture information:
[2025-06-29 01:11:42] 2025-06-29 05:11:10,459 | INFO     | executing command: cat /etc/os-release
[2025-06-29 01:11:42] 2025-06-29 05:11:10,476 | INFO     | cat /etc/os-release:
[2025-06-29 01:11:42] NAME="CentOS Linux"
[2025-06-29 01:11:42] VERSION="7 (Core)"
[2025-06-29 01:11:42] ID="centos"
[2025-06-29 01:11:42] ID_LIKE="rhel fedora"
[2025-06-29 01:11:42] VERSION_ID="7"
[2025-06-29 01:11:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-29 01:11:42] ANSI_COLOR="0;31"
[2025-06-29 01:11:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-29 01:11:42] HOME_URL="https://www.centos.org/"
[2025-06-29 01:11:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-29 01:11:42] 
[2025-06-29 01:11:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-29 01:11:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-29 01:11:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-29 01:11:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-29 01:11:42] 
[2025-06-29 01:11:42] 2025-06-29 05:11:10,476 | INFO     | ***************************************
[2025-06-29 01:11:42] 2025-06-29 05:11:10,979 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-29 01:11:42] 2025-06-29 05:11:10,997 | INFO     | sufficient remaining disk space (29161947136 B)
[2025-06-29 01:11:42] 2025-06-29 05:11:10,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-29 01:11:42] 2025-06-29 05:11:10,998 | INFO     | current server update state: UPDATING_FINAL
[2025-06-29 01:11:42] 2025-06-29 05:11:10,998 | INFO     | update_server=False
[2025-06-29 01:11:42] 2025-06-29 05:11:10,998 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-29 01:11:42] 2025-06-29 05:11:10,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-29 01:11:42] 2025-06-29 05:11:10,999 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-29 01:11:42] 2025-06-29 05:11:11,009 | INFO     | all data control threads have been joined
[2025-06-29 01:11:42] 2025-06-29 05:11:11,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-29 01:11:42] 2025-06-29 05:11:11,612 | INFO     | all payload control threads have been joined
[2025-06-29 01:11:42] 2025-06-29 05:11:11,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-29 01:11:42] 2025-06-29 05:11:11,995 | INFO     | aborting loop
[2025-06-29 01:11:42] 2025-06-29 05:11:12,003 | INFO     | [job] retrieve thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:12,004 | INFO     | [job] queue monitor thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:12,014 | INFO     | [data] control thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:12,071 | INFO     | [payload] validate_post thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:12,109 | INFO     | [job] validate thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:12,115 | INFO     | [job] create_data_payload thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:12,265 | INFO     | all job control threads have been joined
[2025-06-29 01:11:42] 2025-06-29 05:11:12,292 | INFO     | [payload] failed_post thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:12,304 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:12,474 | INFO     | [payload] validate_pre thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:12,501 | INFO     | [data] copytool_in thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:12,618 | INFO     | [payload] control thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:12,880 | INFO     | [payload] execute_payloads thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:13,001 | INFO     | [job] job monitor thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:13,266 | INFO     | [job] control thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:13,607 | INFO     | [data] copytool_out thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:15,005 | INFO     | [data] queue_monitor thread has finished
[2025-06-29 01:11:42] 2025-06-29 05:11:16,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931307751232)>', '<ExcThread(monitor, started 139930328082176)>']
[2025-06-29 01:11:42] 2025-06-29 05:11:21,252 | INFO     | all workflow threads have been joined
[2025-06-29 01:11:42] 2025-06-29 05:11:21,252 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-29 01:11:42] 2025-06-29 05:11:21,253 | INFO     | traces error code: 0
[2025-06-29 01:11:42] 2025-06-29 05:11:21,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-29 01:11:42] 2025-06-29 05:11:42,179 | INFO     | PID=2824 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-29 01:11:42] 2025-06-29 05:11:42,179 | INFO     | found 0 job(s) in 20 queues
[2025-06-29 01:11:42] 2025-06-29 05:11:42,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-29 01:11:42] 2025-06-29 05:11:42,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-29 01:11:42] 2025-06-29 05:11:42,179 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-29 01:11:42] 2025-06-29 05:11:42,179 | INFO     | [monitor] control thread has ended
[2025-06-29 01:11:42] 2025-06-29 05:11:42,282 [wrapper] ==== pilot stdout END ====
[2025-06-29 01:11:42] 2025-06-29 05:11:42,286 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-29 01:11:42] 2025-06-29 05:11:42,289 [wrapper] pilotpid: 2824
[2025-06-29 01:11:42] 2025-06-29 05:11:42,293 [wrapper] Pilot exit status: 0
[2025-06-29 01:11:42] 2025-06-29 05:11:42,307 [wrapper] pandaids: 6712702642
[2025-06-29 01:11:42] 2025-06-29 05:11:42,349 [wrapper] cleanup supervisor_pilot 28918 2826
[2025-06-29 01:11:42] 2025-06-29 05:11:42,353 [wrapper] Test setup, not cleaning
[2025-06-29 01:11:42] 2025-06-29 05:11:42,357 [wrapper] apfmon messages muted
[2025-06-29 01:11:42] 2025-06-29 05:11:42,361 [wrapper] ==== wrapper stdout END ====
[2025-06-29 01:11:42] 2025-06-29 05:11:42,365 [wrapper] ==== wrapper stderr END ====
[2025-06-29 01:11:42]  *** Error codes and diagnostics ***
[2025-06-29 01:11:42]     "exeErrorCode": 0,
[2025-06-29 01:11:42]     "exeErrorDiag": "",
[2025-06-29 01:11:42]     "pilotErrorCode": 0,
[2025-06-29 01:11:42]     "pilotErrorDiag": "",
[2025-06-29 01:11:42]  *** Listing of results directory ***
[2025-06-29 01:11:42] total 549172
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas    530466 Jun 28 23:23 pilot3.tar.gz
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas      5112 Jun 28 23:30 queuedata.json
[2025-06-29 01:11:42] -rwx------ 1 boincer umatlas     36245 Jun 28 23:30 runpilot2-wrapper.sh
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas       100 Jun 28 23:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-29 01:11:42] -rwxr-xr-x 1 boincer umatlas      7986 Jun 28 23:33 run_atlas
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas       105 Jun 28 23:33 job.xml
[2025-06-29 01:11:42] -rw-r--r-- 2 boincer umatlas 304289275 Jun 28 23:33 EVNT.45399141._000006.pool.root.1
[2025-06-29 01:11:42] -rw-r--r-- 2 boincer umatlas     15095 Jun 28 23:33 start_atlas.sh
[2025-06-29 01:11:42] drwxrwx--x 2 boincer umatlas      4096 Jun 28 23:33 shared
[2025-06-29 01:11:42] -rw-r--r-- 2 boincer umatlas    542889 Jun 28 23:33 input.tar.gz
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas         0 Jun 28 23:33 boinc_lockfile
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas      2609 Jun 28 23:33 pandaJob.out
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas    970684 Jun 28 23:33 agis_schedconf.cvmfs.json
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas   1574086 Jun 28 23:33 agis_ddmendpoints.agis.ALL.json
[2025-06-29 01:11:42] drwx------ 4 boincer umatlas      4096 Jun 28 23:33 pilot3
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas      5867 Jun 29 01:09 init_data.xml
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas 252389236 Jun 29 01:10 HITS.45399143._000056.pool.root.1
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas      1051 Jun 29 01:10 memory_monitor_summary.json
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas       529 Jun 29 01:11 boinc_task_state.xml
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas        95 Jun 29 01:11 pilot_heartbeat.json
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas    366103 Jun 29 01:11 log.45399143._000056.job.log.tgz.1
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas      7841 Jun 29 01:11 heartbeat.json
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas      8192 Jun 29 01:11 boinc_mmap_file
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas        27 Jun 29 01:11 wrapper_checkpoint.txt
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas       744 Jun 29 01:11 pilotlog.txt
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas    545473 Jun 29 01:11 log.45399143._000056.job.log.1
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas       357 Jun 29 01:11 output.list
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas       620 Jun 29 01:11 runtime_log
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas    931840 Jun 29 01:11 result.tar.gz
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas       659 Jun 29 01:11 Y0xNDm7uxp7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3h3KDmqAZAWm.diag
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas      8662 Jun 29 01:11 runtime_log.err
[2025-06-29 01:11:42] -rw-r--r-- 1 boincer umatlas     21781 Jun 29 01:11 stderr.txt
[2025-06-29 01:11:42] HITS file was successfully produced:
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas 252389236 Jun 29 01:10 shared/HITS.pool.root.1
[2025-06-29 01:11:42]  *** Contents of shared directory: ***
[2025-06-29 01:11:42] total 545100
[2025-06-29 01:11:42] -rw-r--r-- 2 boincer umatlas 304289275 Jun 28 23:33 ATLAS.root_0
[2025-06-29 01:11:42] -rw-r--r-- 2 boincer umatlas     15095 Jun 28 23:33 start_atlas.sh
[2025-06-29 01:11:42] -rw-r--r-- 2 boincer umatlas    542889 Jun 28 23:33 input.tar.gz
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas 252389236 Jun 29 01:10 HITS.pool.root.1
[2025-06-29 01:11:42] -rw------- 1 boincer umatlas    931840 Jun 29 01:11 result.tar.gz
01:11:43 (31521): run_atlas exited; CPU time 62463.710631
01:11:43 (31521): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN