Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-29 13:58:31 (11592): Detected: vboxwrapper 26206
2025-06-29 13:58:31 (11592): Detected: BOINC client v8.0.2
2025-06-29 13:58:32 (11592): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2025-06-29 13:58:32 (11592): Successfully copied 'init_data.xml' to the shared directory.
2025-06-29 13:58:33 (11592): Create VM. (boinc_d460c149067c313b, slot#1)
2025-06-29 13:58:33 (11592): Setting Memory Size for VM. (6600MB)
2025-06-29 13:58:33 (11592): Setting CPU Count for VM. (4)
2025-06-29 13:58:34 (11592): Setting Chipset Options for VM.
2025-06-29 13:58:34 (11592): Setting Graphics Controller Options for VM.
2025-06-29 13:58:34 (11592): Setting Boot Options for VM.
2025-06-29 13:58:34 (11592): Setting Network Configuration for NAT.
2025-06-29 13:58:35 (11592): Enabling VM Network Access.
2025-06-29 13:58:35 (11592): Disabling USB Support for VM.
2025-06-29 13:58:35 (11592): Disabling COM Port Support for VM.
2025-06-29 13:58:35 (11592): Disabling LPT Port Support for VM.
2025-06-29 13:58:36 (11592): Disabling Audio Support for VM.
2025-06-29 13:58:36 (11592): Disabling Clipboard Support for VM.
2025-06-29 13:58:36 (11592): Disabling Drag and Drop Support for VM.
2025-06-29 13:58:36 (11592): Adding storage controller(s) to VM.
2025-06-29 13:58:37 (11592): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-29 13:58:37 (11592): Adding VirtualBox Guest Additions to VM.
2025-06-29 13:58:37 (11592): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-29 13:58:38 (11592): forwarding host port 64826 to guest port 80
2025-06-29 13:58:38 (11592): Enabling remote desktop for VM.
2025-06-29 13:58:38 (11592): Enabling shared directory for VM.
2025-06-29 13:58:39 (11592): Starting VM using VBoxManage interface. (boinc_d460c149067c313b, slot#1)
2025-06-29 13:58:48 (11592): Successfully started VM. (PID = '19092')
2025-06-29 13:58:48 (11592): Reporting VM Process ID to BOINC.
2025-06-29 13:58:48 (11592): Guest Log: BIOS: VirtualBox 7.0.14
2025-06-29 13:58:48 (11592): Guest Log: CPUID EDX: 0x178bfbff
2025-06-29 13:58:48 (11592): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-29 13:58:48 (11592): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-29 13:58:48 (11592): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-29 13:58:48 (11592): Detected: Web Application Enabled (http://localhost:64826)
2025-06-29 13:58:48 (11592): Detected: Remote Desktop Enabled (localhost:64848)
2025-06-29 13:58:48 (11592): Preference change detected
2025-06-29 13:58:48 (11592): Setting CPU throttle for VM. (100%)
2025-06-29 13:58:48 (11592): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-29 13:58:50 (11592): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-29 13:58:50 (11592): Guest Log: BIOS: Booting from Hard Disk...
2025-06-29 13:58:53 (11592): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-29 13:58:53 (11592): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-29 13:58:53 (11592): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-29 13:58:58 (11592): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-29 13:58:58 (11592): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-29 13:59:03 (11592): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-29 13:59:03 (11592): Guest Log: 00:00:00.000166 main     Log opened 2025-06-29T13:59:01.267699000Z
2025-06-29 13:59:03 (11592): Guest Log: 00:00:00.000272 main     OS Product: Linux
2025-06-29 13:59:03 (11592): Guest Log: 00:00:00.000305 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-29 13:59:03 (11592): Guest Log: 00:00:00.000360 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-29 13:59:03 (11592): Guest Log: 00:00:00.000387 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-29 13:59:03 (11592): Guest Log: 00:00:00.000388 main     Process ID: 1370
2025-06-29 13:59:03 (11592): Guest Log: 00:00:00.000388 main     Package type: LINUX_64BITS_GENERIC
2025-06-29 13:59:03 (11592): Guest Log: 00:00:00.001110 main     5.2.32 r132073 started. Verbose level = 0
2025-06-29 13:59:03 (11592): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-29 13:59:03 (11592): Guest Log: [INFO] Mounting shared directory
2025-06-29 13:59:03 (11592): Guest Log: [INFO] Checking for init_data.xml
2025-06-29 13:59:08 (11592): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-29 13:59:08 (11592): Guest Log: [INFO] Detected branch: prod
2025-06-29 13:59:08 (11592): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-29 13:59:08 (11592): Guest Log: Copying input files
2025-06-29 13:59:09 (11592): Guest Log: Copied input files into RunAtlas.
2025-06-29 13:59:09 (11592): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.130:3128 - will set in /etc/cvmfs/default.local
2025-06-29 13:59:13 (11592): Guest Log: 00:00:10.003189 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 217 769 000ns (GuestNow=1 751 201 953 052 452 000 ns GuestLast=1 751 205 541 270 221 000 ns fSetTimeLastLoop=true )
2025-06-29 13:59:19 (11592): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-29 13:59:19 (11592): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-29 13:59:19 (11592): Guest Log: 2.6.3.0 1663 0 29632 147718 4 1 3117618 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.130:3128 1
2025-06-29 13:59:19 (11592): Guest Log: copied the webapp to /var/www
2025-06-29 13:59:19 (11592): Guest Log: ATHENA_PROC_NUMBER=4
2025-06-29 13:59:19 (11592): Guest Log: ATHENA_CORE_NUMBER=4
2025-06-29 13:59:20 (11592): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-29 13:59:20 (11592): Guest Log:  *** Starting ATLAS job. (PandaID=6712671321 taskID=45400040) ***
2025-06-29 15:38:52 (11592): Status Report: Elapsed Time: '6000.000000'
2025-06-29 15:38:52 (11592): Status Report: CPU Time: '22262.031250'
2025-06-29 17:18:56 (11592): Status Report: Elapsed Time: '12000.000000'
2025-06-29 17:18:56 (11592): Status Report: CPU Time: '46251.921875'
2025-06-29 18:26:38 (11592): Guest Log:  *** Job finished ***
2025-06-29 18:26:38 (11592): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:26,935 | INFO     | end of generic workflow (traces error code: 0)
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:26,935 | INFO     | traces error code: 0
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:26,935 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,815 | INFO     | PID=5979 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,815 | INFO     | found 0 job(s) in 20 queues
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,815 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,815 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,816 | CRITICAL | thread 'MainThread' is not alive
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,816 | INFO     | [monitor] control thread has ended
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,899 [wrapper] ==== pilot stdout END ====
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,903 [wrapper] ==== wrapper stdout RESUME ====
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,908 [wrapper] pilotpid: 5979
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,912 [wrapper] Pilot exit status: 0
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:37,986 [wrapper] pandaids: 6712671321
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:38,010 [wrapper] cleanup supervisor_pilot 16495 5980
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:38,014 [wrapper] Test setup, not cleaning
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:38,018 [wrapper] apfmon messages muted
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:38,022 [wrapper] ==== wrapper stdout END ====
2025-06-29 18:26:38 (11592): Guest Log: 2025-06-29 17:26:38,026 [wrapper] ==== wrapper stderr END ====
2025-06-29 18:26:38 (11592): Guest Log:  *** Error codes and diagnostics ***
2025-06-29 18:26:38 (11592): Guest Log:     "exeErrorCode": 0,
2025-06-29 18:26:38 (11592): Guest Log:     "exeErrorDiag": "",
2025-06-29 18:26:38 (11592): Guest Log:     "pilotErrorCode": 0,
2025-06-29 18:26:38 (11592): Guest Log:     "pilotErrorDiag": "",
2025-06-29 18:26:38 (11592): Guest Log:  *** Listing of results directory ***
2025-06-29 18:26:38 (11592): Guest Log: total 253396
2025-06-29 18:26:38 (11592): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jun 29 02:27 pilot3.tar.gz
2025-06-29 18:26:38 (11592): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jun 29 02:33 queuedata.json
2025-06-29 18:26:38 (11592): Guest Log: -rwx------. 1 atlas atlas     36245 Jun 29 02:33 runpilot2-wrapper.sh
2025-06-29 18:26:38 (11592): Guest Log: -rwxr-xr-x. 1 atlas atlas      9291 Jun 29 12:59 init_data.xml
2025-06-29 18:26:38 (11592): Guest Log: -rwxr-xr-x. 1 atlas atlas    542892 Jun 29 12:59 input.tar.gz
2025-06-29 18:26:38 (11592): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jun 29 12:59 start_atlas.sh
2025-06-29 18:26:38 (11592): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 29 12:59 EVNT.45400038._000004.pool.root.1 -> /data/./ATLAS.root_0
2025-06-29 18:26:38 (11592): Guest Log: -rw-r--r--. 1 atlas atlas      2612 Jun 29 12:59 pandaJob.out
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas    970676 Jun 29 13:00 agis_schedconf.cvmfs.json
2025-06-29 18:26:38 (11592): Guest Log: drwx------. 4 atlas atlas      4096 Jun 29 13:00 pilot3
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas 252314213 Jun 29 17:25 HITS.45400040._000094.pool.root.1
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas        95 Jun 29 17:25 pilot_heartbeat.json
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas      1045 Jun 29 17:25 memory_monitor_summary.json
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas   1574086 Jun 29 17:25 agis_ddmendpoints.agis.ALL.json
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas    349334 Jun 29 17:25 log.45400040._000094.job.log.tgz.1
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas      7817 Jun 29 17:26 heartbeat.json
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas       814 Jun 29 17:26 pilotlog.txt
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas   1343322 Jun 29 17:26 log.45400040._000094.job.log.1
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas       357 Jun 29 17:26 output.list
2025-06-29 18:26:38 (11592): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 29 17:26 runtime_log
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas   1710080 Jun 29 17:26 result.tar.gz
2025-06-29 18:26:38 (11592): Guest Log: -rw-r--r--. 1 atlas atlas      8588 Jun 29 17:26 runtime_log.err
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas       655 Jun 29 17:26 LjjKDmo2wp7n9Rq4apOajLDm4fhM0noT9bVof3QYDmlykKDmUdKS0m.diag
2025-06-29 18:26:38 (11592): Guest Log: Looking for outputfile HITS.45400040._000094.pool.root.1
2025-06-29 18:26:38 (11592): Guest Log: HITS file was successfully produced
2025-06-29 18:26:38 (11592): Guest Log: -rw-------. 1 atlas atlas 252314213 Jun 29 17:25 /home/atlas/RunAtlas/HITS.45400040._000094.pool.root.1
2025-06-29 18:26:39 (11592): Guest Log: Successfully finished the ATLAS job!
2025-06-29 18:26:39 (11592): Guest Log: Copying the results back to the shared directory!
2025-06-29 18:26:39 (11592): Guest Log:  *** Contents of shared directory: ***
2025-06-29 18:26:39 (11592): Guest Log: total 540104
2025-06-29 18:26:39 (11592): Guest Log: -rwxrwxrwx. 1 root root 298462111 Jun 29 12:58 ATLAS.root_0
2025-06-29 18:26:39 (11592): Guest Log: -rwxrwxrwx. 1 root root 252314213 Jun 29 17:26 HITS.pool.root.1
2025-06-29 18:26:39 (11592): Guest Log: -rwxrwxrwx. 1 root root      9291 Jun 29 12:58 init_data.xml
2025-06-29 18:26:39 (11592): Guest Log: -rwxrwxrwx. 1 root root    542892 Jun 29 02:40 input.tar.gz
2025-06-29 18:26:39 (11592): Guest Log: -rwxrwxrwx. 1 root root   1710080 Jun 29 17:26 result.tar.gz
2025-06-29 18:26:39 (11592): Guest Log: -rwxrwxrwx. 1 root root     15095 Jun 29 02:40 start_atlas.sh
2025-06-29 18:26:39 (11592): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-29 18:26:39 (11592): VM Completion File Detected.
2025-06-29 18:26:39 (11592): Powering off VM.
2025-06-29 18:26:41 (11592): Successfully stopped VM.
2025-06-29 18:26:41 (11592): Deregistering VM. (boinc_d460c149067c313b, slot#1)
2025-06-29 18:26:41 (11592): Removing network bandwidth throttle group from VM.
2025-06-29 18:26:41 (11592): Removing VM from VirtualBox.
18:26:46 (11592): called boinc_finish(0)

</stderr_txt>
]]>

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