Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:58:27 (18307): wrapper (7.7.26015): starting
21:58:27 (18307): wrapper: running run_atlas (--nthreads 12)
[2025-06-28 21:58:27] Arguments: --nthreads 12
[2025-06-28 21:58:27] Threads: 12
[2025-06-28 21:58:27] Checking for CVMFS
[2025-06-28 21:58:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-28 21:58:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-28 21:58:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-28 21:58:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-28 21:58:27] 2.11.2.0 2924 71006 95360 147700 1 1 13007857 20275200 1 130560 0 25229525 99.964 8909833 10139 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-28 21:58:27] CVMFS is ok
[2025-06-28 21:58:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-28 21:58:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-28 21:58:27] Further information can be found at the LHC@home message board.
[2025-06-28 21:58:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-28 21:58:27] Checking for apptainer binary...
[2025-06-28 21:58:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-28 21:58:27] Running /usr/bin/apptainer --version
[2025-06-28 21:58:27] apptainer version 1.3.2-1.el7
[2025-06-28 21:58:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-28 21:58:28] c-205-28.aglt2.org
[2025-06-28 21:58:28] apptainer works
[2025-06-28 21:58:28] Set ATHENA_PROC_NUMBER=12
[2025-06-28 21:58:28] Set ATHENA_CORE_NUMBER=12
[2025-06-28 21:58:28] Starting ATLAS job with PandaID=6712496100
[2025-06-28 21:58:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-28 23:33:00]  *** The last 200 lines of the pilot log: ***
[2025-06-28 23:33:00]  mtime=0
[2025-06-28 23:33:00]  protocol_id=None
[2025-06-28 23:33:00]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-28 23:33:00]  replicas=None
[2025-06-28 23:33:00]  scope=mc23_13p6TeV
[2025-06-28 23:33:00]  status=None
[2025-06-28 23:33:00]  status_code=0
[2025-06-28 23:33:00]  storage_token=
[2025-06-28 23:33:00]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6712496100/log.45399567._000002.job.log.tgz.1
[2025-06-28 23:33:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/b6/log.45399567._000002.job.log.tgz.1
[2025-06-28 23:33:00]  workdir=None
[2025-06-28 23:33:00] ]
[2025-06-28 23:33:00] 2025-06-29 03:32:22,830 | INFO     | transferring file log.45399567._000002.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6712496100/log.45399567._000002.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-28 23:33:00] 2025-06-29 03:32:22,831 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6712496100/log.45399567._000002.job.log.tgz.1 /tmp/boinchome/slots/0/log.45399567._000002.job
[2025-06-28 23:33:00] 2025-06-29 03:32:22,854 | INFO     | adding to output.list: log.45399567._000002.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/b6/log.45399567._000002.job.log.tg
[2025-06-28 23:33:00] 2025-06-29 03:32:22,855 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-28 23:33:00] 2025-06-29 03:32:22,855 | INFO     | summary of transferred files:
[2025-06-28 23:33:00] 2025-06-29 03:32:22,856 | INFO     |  -- lfn=log.45399567._000002.job.log.tgz.1, status_code=0, status=transferred
[2025-06-28 23:33:00] 2025-06-29 03:32:22,856 | INFO     | stage-out finished correctly
[2025-06-28 23:33:00] 2025-06-29 03:32:23,467 | WARNING  | process 28475 can no longer be monitored (due to stat problems) - aborting
[2025-06-28 23:33:00] 2025-06-29 03:32:23,468 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6712496100/memory_monitor_summary.json (trf name=prmon)
[2025-06-28 23:33:00] 2025-06-29 03:32:23,554 | INFO     | number of running child processes to parent process 28475: 1
[2025-06-28 23:33:00] 2025-06-29 03:32:23,555 | INFO     | maximum number of monitored processes: 6
[2025-06-28 23:33:00] 2025-06-29 03:32:24,472 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-28 23:33:00] 2025-06-29 03:32:24,557 | INFO     | job 6712496100 has state=finished
[2025-06-28 23:33:00] 2025-06-29 03:32:24,557 | INFO     | preparing for final server update for job 6712496100 in state='finished'
[2025-06-28 23:33:00] 2025-06-29 03:32:24,558 | INFO     | this job has now completed (state=finished)
[2025-06-28 23:33:00] 2025-06-29 03:32:24,558 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-28 23:33:00] 2025-06-29 03:32:24,558 | INFO     | log transfer has been attempted: DONE
[2025-06-28 23:33:00] 2025-06-29 03:32:24,558 | INFO     | job 6712496100 has finished - writing final server update
[2025-06-28 23:33:00] 2025-06-29 03:32:24,559 | INFO     | total number of processed events: 400 (read)
[2025-06-28 23:33:00] 2025-06-29 03:32:24,560 | INFO     | executing command: lscpu
[2025-06-28 23:33:00] 2025-06-29 03:32:24,586 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-28 23:33:00] 2025-06-29 03:32:26,060 | INFO     | monitor loop #420: job 0:6712496100 is in state 'finished'
[2025-06-28 23:33:00] 2025-06-29 03:32:26,060 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-28 23:33:00] 2025-06-29 03:32:28,563 | INFO     | monitor loop #421: job 0:6712496100 is in state 'finished'
[2025-06-28 23:33:00] 2025-06-29 03:32:28,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-28 23:33:00] 2025-06-29 03:32:29,343 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-28 23:33:00] 2025-06-29 03:32:29,347 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-06-28 23:33:00] 2025-06-29 03:32:29,350 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6712496100/memory_monitor_summary.json (trf name=prmon)
[2025-06-28 23:33:00] 2025-06-29 03:32:29,350 | INFO     | extracted standard info from prmon json
[2025-06-28 23:33:00] 2025-06-29 03:32:29,351 | INFO     | extracted standard memory fields from prmon json
[2025-06-28 23:33:00] 2025-06-29 03:32:29,351 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-28 23:33:00] 2025-06-29 03:32:29,351 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-28 23:33:00] 2025-06-29 03:32:29,351 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-28 23:33:00] 2025-06-29 03:32:29,354 | INFO     | fitting pss+swap vs Time
[2025-06-28 23:33:00] 2025-06-29 03:32:29,354 | INFO     | sum of square deviations: 190403570.0
[2025-06-28 23:33:00] 2025-06-29 03:32:29,355 | INFO     | sum of deviations: 4376220276.0
[2025-06-28 23:33:00] 2025-06-29 03:32:29,355 | INFO     | mean x: 1751165221.0
[2025-06-28 23:33:00] 2025-06-29 03:32:29,355 | INFO     | mean y: 2718882.6
[2025-06-28 23:33:00] 2025-06-29 03:32:29,355 | INFO     | -- intersect: -40245921133.79372
[2025-06-28 23:33:00] 2025-06-29 03:32:29,355 | INFO     | intersect: -40245921133.79372
[2025-06-28 23:33:00] 2025-06-29 03:32:29,355 | INFO     | chi2: 0.0915131955369915
[2025-06-28 23:33:00] 2025-06-29 03:32:29,355 | INFO     | -- intersect: -40245921133.79372
[2025-06-28 23:33:00] 2025-06-29 03:32:29,356 | INFO     | current memory leak: 22.98 B/s (using 85 data points, chi2=0.09)
[2025-06-28 23:33:00] 2025-06-29 03:32:29,356 | INFO     | could have reported an average CPU frequency of 2012 MHz (7 samples)
[2025-06-28 23:33:00] 2025-06-29 03:32:29,356 | INFO     | ..............................
[2025-06-28 23:33:00] 2025-06-29 03:32:29,356 | INFO     | . Timing measurements:
[2025-06-28 23:33:00] 2025-06-29 03:32:29,356 | INFO     | . get job = 0 s
[2025-06-28 23:33:00] 2025-06-29 03:32:29,356 | INFO     | . initial setup = 2 s
[2025-06-28 23:33:00] 2025-06-29 03:32:29,356 | INFO     | . payload setup = 10 s
[2025-06-28 23:33:00] 2025-06-29 03:32:29,357 | INFO     | . stage-in = 0 s
[2025-06-28 23:33:00] 2025-06-29 03:32:29,357 | INFO     | . payload execution = 5589 s
[2025-06-28 23:33:00] 2025-06-29 03:32:29,357 | INFO     | . stage-out = 0 s
[2025-06-28 23:33:00] 2025-06-29 03:32:29,357 | INFO     | . log creation = 0 s
[2025-06-28 23:33:00] 2025-06-29 03:32:29,357 | INFO     | ..............................
[2025-06-28 23:33:00] 2025-06-29 03:32:29,440 | INFO     | 
[2025-06-28 23:33:00] 2025-06-29 03:32:29,440 | INFO     | job summary report
[2025-06-28 23:33:00] 2025-06-29 03:32:29,440 | INFO     | --------------------------------------------------
[2025-06-28 23:33:00] 2025-06-29 03:32:29,441 | INFO     | PanDA job id: 6712496100
[2025-06-28 23:33:00] 2025-06-29 03:32:29,441 | INFO     | task id: 45399567
[2025-06-28 23:33:00] 2025-06-29 03:32:29,441 | INFO     | errors: (none)
[2025-06-28 23:33:00] 2025-06-29 03:32:29,441 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-28 23:33:00] 2025-06-29 03:32:29,441 | INFO     | pilot state: finished 
[2025-06-28 23:33:00] 2025-06-29 03:32:29,441 | INFO     | transexitcode: 0
[2025-06-28 23:33:00] 2025-06-29 03:32:29,441 | INFO     | exeerrorcode: 0
[2025-06-28 23:33:00] 2025-06-29 03:32:29,441 | INFO     | exeerrordiag: 
[2025-06-28 23:33:00] 2025-06-29 03:32:29,442 | INFO     | exitcode: 0
[2025-06-28 23:33:00] 2025-06-29 03:32:29,442 | INFO     | exitmsg: OK
[2025-06-28 23:33:00] 2025-06-29 03:32:29,442 | INFO     | cpuconsumptiontime: 60432 s
[2025-06-28 23:33:00] 2025-06-29 03:32:29,442 | INFO     | nevents: 400
[2025-06-28 23:33:00] 2025-06-29 03:32:29,442 | INFO     | neventsw: 0
[2025-06-28 23:33:00] 2025-06-29 03:32:29,442 | INFO     | pid: 28475
[2025-06-28 23:33:00] 2025-06-29 03:32:29,442 | INFO     | pgrp: 28475
[2025-06-28 23:33:00] 2025-06-29 03:32:29,442 | INFO     | corecount: 12
[2025-06-28 23:33:00] 2025-06-29 03:32:29,442 | INFO     | event service: False
[2025-06-28 23:33:00] 2025-06-29 03:32:29,443 | INFO     | sizes: {0: 2366496, 1: 2366695, 6: 2366957, 11: 2366985, 5603: 2393574, 5604: 2402572, 5606: 2402756, 5611: 2402950}
[2025-06-28 23:33:00] 2025-06-29 03:32:29,443 | INFO     | --------------------------------------------------
[2025-06-28 23:33:00] 2025-06-29 03:32:29,443 | INFO     | 
[2025-06-28 23:33:00] 2025-06-29 03:32:29,443 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-28 23:33:00] 2025-06-29 03:32:29,466 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,467 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,467 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,467 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,467 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,467 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-28 23:33:00] 2025-06-29 03:32:29,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,470 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-28 23:33:00] 2025-06-29 03:32:29,470 | INFO     | job 6712496100 has completed (purged errors)
[2025-06-28 23:33:00] 2025-06-29 03:32:29,470 | INFO     | overall cleanup function is called
[2025-06-28 23:33:00] 2025-06-29 03:32:30,478 | INFO     | --- collectZombieJob: --- 10, [28475]
[2025-06-28 23:33:00] 2025-06-29 03:32:30,479 | INFO     | zombie collector waiting for pid 28475
[2025-06-28 23:33:00] 2025-06-29 03:32:30,479 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-28 23:33:00] 2025-06-29 03:32:30,479 | INFO     | collected zombie processes
[2025-06-28 23:33:00] 2025-06-29 03:32:30,479 | INFO     | will attempt to kill all subprocesses of pid=28475
[2025-06-28 23:33:00] 2025-06-29 03:32:30,567 | INFO     | process IDs to be killed: [28475] (in reverse order)
[2025-06-28 23:33:00] 2025-06-29 03:32:30,620 | WARNING  | found no corresponding commands to process id(s)
[2025-06-28 23:33:00] 2025-06-29 03:32:30,621 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-28 23:33:00] 2025-06-29 03:32:30,624 | INFO     | did not find any defunct processes belonging to 28475
[2025-06-28 23:33:00] 2025-06-29 03:32:30,626 | INFO     | did not find any defunct processes belonging to 28475
[2025-06-28 23:33:00] 2025-06-29 03:32:30,626 | INFO     | ready for new job
[2025-06-28 23:33:00] 2025-06-29 03:32:30,627 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-28 23:33:00] 2025-06-29 03:32:30,627 | INFO     | ***************************************
[2025-06-28 23:33:00] 2025-06-29 03:32:30,628 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-06-28 23:33:00] 2025-06-29 03:32:30,628 | INFO     | ***************************************
[2025-06-28 23:33:00] 2025-06-29 03:32:30,628 | INFO     | 
[2025-06-28 23:33:00] 2025-06-29 03:32:30,628 | INFO     | architecture information:
[2025-06-28 23:33:00] 2025-06-29 03:32:30,629 | INFO     | executing command: cat /etc/os-release
[2025-06-28 23:33:00] 2025-06-29 03:32:30,643 | INFO     | cat /etc/os-release:
[2025-06-28 23:33:00] NAME="CentOS Linux"
[2025-06-28 23:33:00] VERSION="7 (Core)"
[2025-06-28 23:33:00] ID="centos"
[2025-06-28 23:33:00] ID_LIKE="rhel fedora"
[2025-06-28 23:33:00] VERSION_ID="7"
[2025-06-28 23:33:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-28 23:33:00] ANSI_COLOR="0;31"
[2025-06-28 23:33:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-28 23:33:00] HOME_URL="https://www.centos.org/"
[2025-06-28 23:33:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-28 23:33:00] 
[2025-06-28 23:33:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-28 23:33:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-28 23:33:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-28 23:33:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-28 23:33:00] 
[2025-06-28 23:33:00] 2025-06-29 03:32:30,643 | INFO     | ***************************************
[2025-06-28 23:33:00] 2025-06-29 03:32:31,146 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-28 23:33:00] 2025-06-29 03:32:31,168 | INFO     | sufficient remaining disk space (29197598720 B)
[2025-06-28 23:33:00] 2025-06-29 03:32:31,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-28 23:33:00] 2025-06-29 03:32:31,169 | INFO     | current server update state: UPDATING_FINAL
[2025-06-28 23:33:00] 2025-06-29 03:32:31,169 | INFO     | update_server=False
[2025-06-28 23:33:00] 2025-06-29 03:32:31,169 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-28 23:33:00] 2025-06-29 03:32:31,169 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-28 23:33:00] 2025-06-29 03:32:31,170 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-28 23:33:00] 2025-06-29 03:32:31,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-28 23:33:00] 2025-06-29 03:32:31,820 | INFO     | all data control threads have been joined
[2025-06-28 23:33:00] 2025-06-29 03:32:31,853 | INFO     | all payload control threads have been joined
[2025-06-28 23:33:00] 2025-06-29 03:32:32,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-28 23:33:00] 2025-06-29 03:32:32,071 | INFO     | aborting loop
[2025-06-28 23:33:00] 2025-06-29 03:32:32,175 | INFO     | [job] retrieve thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:32,176 | INFO     | [job] queue monitor thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:32,284 | INFO     | all job control threads have been joined
[2025-06-28 23:33:00] 2025-06-29 03:32:32,290 | INFO     | [payload] validate_pre thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:32,662 | INFO     | [payload] validate_post thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:32,804 | INFO     | [data] copytool_in thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:32,826 | INFO     | [data] control thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:32,858 | INFO     | [payload] control thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:33,077 | INFO     | [job] job monitor thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:33,176 | INFO     | [data] copytool_out thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:33,289 | INFO     | [job] control thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:33,390 | INFO     | [job] create_data_payload thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:33,434 | INFO     | [job] validate thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:33,491 | INFO     | [payload] execute_payloads thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:33,542 | INFO     | [payload] failed_post thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:35,173 | INFO     | [data] queue_monitor thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:42,138 | INFO     | job.realtimelogging is not enabled
[2025-06-28 23:33:00] 2025-06-29 03:32:43,140 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-28 23:33:00] 2025-06-29 03:32:45,139 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140292496783168)>', '<ExcThread(monitor, started 140292061644544)>']
[2025-06-28 23:33:00] 2025-06-29 03:32:50,165 | INFO     | all workflow threads have been joined
[2025-06-28 23:33:00] 2025-06-29 03:32:50,165 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-28 23:33:00] 2025-06-29 03:32:50,165 | INFO     | traces error code: 0
[2025-06-28 23:33:00] 2025-06-29 03:32:50,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-28 23:33:00] 2025-06-29 03:33:00,688 | INFO     | PID=22004 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-28 23:33:00] 2025-06-29 03:33:00,689 | INFO     | found 0 job(s) in 20 queues
[2025-06-28 23:33:00] 2025-06-29 03:33:00,689 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-28 23:33:00] 2025-06-29 03:33:00,689 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-28 23:33:00] 2025-06-29 03:33:00,689 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-28 23:33:00] 2025-06-29 03:33:00,689 | INFO     | [monitor] control thread has ended
[2025-06-28 23:33:00] 2025-06-29 03:33:00,765 [wrapper] ==== pilot stdout END ====
[2025-06-28 23:33:00] 2025-06-29 03:33:00,769 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-28 23:33:00] 2025-06-29 03:33:00,773 [wrapper] pilotpid: 22004
[2025-06-28 23:33:00] 2025-06-29 03:33:00,777 [wrapper] Pilot exit status: 0
[2025-06-28 23:33:00] 2025-06-29 03:33:00,793 [wrapper] pandaids: 6712496100
[2025-06-28 23:33:00] 2025-06-29 03:33:00,833 [wrapper] cleanup supervisor_pilot 24690 22005
[2025-06-28 23:33:00] 2025-06-29 03:33:00,837 [wrapper] Test setup, not cleaning
[2025-06-28 23:33:00] 2025-06-29 03:33:00,841 [wrapper] apfmon messages muted
[2025-06-28 23:33:00] 2025-06-29 03:33:00,845 [wrapper] ==== wrapper stdout END ====
[2025-06-28 23:33:00] 2025-06-29 03:33:00,848 [wrapper] ==== wrapper stderr END ====
[2025-06-28 23:33:00]  *** Error codes and diagnostics ***
[2025-06-28 23:33:00]     "exeErrorCode": 0,
[2025-06-28 23:33:00]     "exeErrorDiag": "",
[2025-06-28 23:33:00]     "pilotErrorCode": 0,
[2025-06-28 23:33:00]     "pilotErrorDiag": "",
[2025-06-28 23:33:00]  *** Listing of results directory ***
[2025-06-28 23:33:00] total 524684
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas    530466 Jun 28 21:29 pilot3.tar.gz
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas      5112 Jun 28 21:53 queuedata.json
[2025-06-28 23:33:00] -rwx------ 1 boincer umatlas     36245 Jun 28 21:53 runpilot2-wrapper.sh
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas       100 Jun 28 21:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-28 23:33:00] -rwxr-xr-x 1 boincer umatlas      7986 Jun 28 21:58 run_atlas
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas       105 Jun 28 21:58 job.xml
[2025-06-28 23:33:00] -rw-r--r-- 2 boincer umatlas 293373148 Jun 28 21:58 EVNT.45399565._000001.pool.root.1
[2025-06-28 23:33:00] -rw-r--r-- 2 boincer umatlas     15095 Jun 28 21:58 start_atlas.sh
[2025-06-28 23:33:00] drwxrwx--x 2 boincer umatlas      4096 Jun 28 21:58 shared
[2025-06-28 23:33:00] -rw-r--r-- 2 boincer umatlas    542882 Jun 28 21:58 input.tar.gz
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas         0 Jun 28 21:58 boinc_lockfile
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas      2620 Jun 28 21:58 pandaJob.out
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas    970692 Jun 28 21:58 agis_schedconf.cvmfs.json
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas   1574086 Jun 28 21:58 agis_ddmendpoints.agis.ALL.json
[2025-06-28 23:33:00] drwx------ 4 boincer umatlas      4096 Jun 28 21:58 pilot3
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas      5867 Jun 28 23:28 init_data.xml
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas       530 Jun 28 23:31 boinc_task_state.xml
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas 238271006 Jun 28 23:31 HITS.45399567._000002.pool.root.1
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas      1046 Jun 28 23:32 memory_monitor_summary.json
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas    358209 Jun 28 23:32 log.45399567._000002.job.log.tgz.1
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas      7829 Jun 28 23:32 heartbeat.json
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas      8192 Jun 28 23:32 boinc_mmap_file
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas        27 Jun 28 23:32 wrapper_checkpoint.txt
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas       745 Jun 28 23:33 pilotlog.txt
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas        95 Jun 28 23:33 pilot_heartbeat.json
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas    529908 Jun 28 23:33 log.45399567._000002.job.log.1
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas       357 Jun 28 23:33 output.list
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas       620 Jun 28 23:33 runtime_log
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas    911360 Jun 28 23:33 result.tar.gz
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas      8662 Jun 28 23:33 runtime_log.err
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas       660 Jun 28 23:33 2ouLDmzPwp7n9Rq4apOajLDm4fhM0noT9bVof3QYDmppkKDmsjxWXn.diag
[2025-06-28 23:33:00] -rw-r--r-- 1 boincer umatlas     21722 Jun 28 23:33 stderr.txt
[2025-06-28 23:33:00] HITS file was successfully produced:
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas 238271006 Jun 28 23:31 shared/HITS.pool.root.1
[2025-06-28 23:33:00]  *** Contents of shared directory: ***
[2025-06-28 23:33:00] total 520636
[2025-06-28 23:33:00] -rw-r--r-- 2 boincer umatlas 293373148 Jun 28 21:58 ATLAS.root_0
[2025-06-28 23:33:00] -rw-r--r-- 2 boincer umatlas     15095 Jun 28 21:58 start_atlas.sh
[2025-06-28 23:33:00] -rw-r--r-- 2 boincer umatlas    542882 Jun 28 21:58 input.tar.gz
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas 238271006 Jun 28 23:31 HITS.pool.root.1
[2025-06-28 23:33:00] -rw------- 1 boincer umatlas    911360 Jun 28 23:33 result.tar.gz
23:33:02 (18307): run_atlas exited; CPU time 60395.037515
23:33:02 (18307): called boinc_finish(0)

</stderr_txt>
]]>

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